These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6718#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence [GGAGGTACCACTGGTCCACTAGCACCGGACCTTGATGAAATTATTGGCGATTCAGATGAGGAAAATCAATCTGATGAAGAATTACTTACATCTGCTGAATTACTGAAACGTTTTTATACCCTGTACTATTAACTGCACACTCTGACCTGTTAGGTCTTATTCAAGCTGAAGTTAATCAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGAATTCAAGCGATTACATGCGTATTCGGATGAAAAAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCATAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGGNAGTGAGTCTCACGATTAGATTCTATTTTTCTAGCAACTGGTTTTGTTTGACGGGTTTTGTGTTTAAAGTGTTTTTTGTACTAAAATCT] [+] EMBL CD080981 [GGAGGTACCACTGGTCCACTAGCACCGGACCTTGATGAAATTATTGGCGATTCAGATGAGGAAAATCAATCTGATGAAGAATTACTTACATCTGCTGAATTACTGAAACGTTTTTATACCCTGTACTATTAACTGCACACTCTGACCTGTTAGGTCTTATTCAAGCTGAAGTTAATCAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGAATTCAAGCGATTACATGCGTATTCGGATGAAAAAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCATAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGGNAGTGAGTCTCACGATTAGATTCTATTTTTCTAGCAACTGGTTTTGTTTGACGGGTTTTGTGTTTAAAGTGTTTTTTGTACTAAAATCT] consensusID : consensus_6718#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [TAATAATCATATTATATGCAACCATTGAACAAGAAAACCTTTCAACATGCTTTTAAACTTGTTATTCAGCATTTATTTCTGTTTATTCTTATATTACTTCTATTTGATAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCGTAAATTTTCAGTGATTTTCTGTTTTTTTGTTGTTGTCAGAATGAAAGAATCAGTTAACTGTTTAGCATTATTTTAGATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTTACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTATTTTTCTAGCAACTGTTTTTGTTTGACGGGTTTGTGTTTAAAGTGTTTTTTATACTAAAATCTACTAT] [-] EMBL CD074602 [TAATAATCATATTATATGCAACCATTGAACAAGAAAACCTTTCAACATGCTTTTAAACTTGTTATTCAGCATTTATTTCTGTTTATTCTTATATTACTTCTATTTGATAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCGTAAATTTTCAGTGATTTTCTGTTTTTTTGTTGTTGTCAGAATGAAAGAATCAGTTAACTGTTTAGCATTATTTTAGATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTTACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTATTTTTCTAGCAACTGTTTTTGTTTGACGGGTTTGTGTTTAAAGTGTTTTTTATACTAAAATCTACTAT] consensusID : consensus_6718#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [ACCTGTANGGTCTTATTCAAGCTGAAGTTAATCAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGAATTCAAGTTGAAAGAATCCGATTTATCATGGTCGATTACATGCGTATTCGGATGAAAAAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTTACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTATTTTTCTAGCAACTGTTTTTGTTTGACGGGTTTGTGTTTAAAGTGTTTTTTGTACTAAAATCTA] [-] EMBL CD074807 [ACCTGTANGGTCTTATTCAAGCTGAAGTTAATCAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGAATTCAAGTTGAAAGAATCCGATTTATCATGGTCGATTACATGCGTATTCGGATGAAAAAGATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCGCGTAATTCAAATGAATCACCACATTTGACAGTGGAAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTTACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAAGGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTATTTTTCTAGCAACTGTTTTTGTTTGACGGGTTTGTGTTTAAAGTGTTTTTTGTACTAAAATCTA] consensusID : consensus_6718#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 253 fasta sequence [CGTAATTCAAATGAATCACCACATTGACAGTGGGAAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCAGTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACAAATTAAAATT] [-] EMBL CD181381 [CGTAATTCAAATGAATCACCACATTGACAGTGGGAAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGAGAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGACGAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCAGTGAAAAAAATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACAAATTAAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6718#0 GGAGGTACCACTGGTCCACTAGCACCGGACCTTGATGAAATTATTGGCGATTCAGATGAG 60 consensus_6718#2 ------------------------------------------------------------ consensus_6718#3 ------------------------------------------------------------ consensus_6718#1 ------------------------------------------------------------ consensus_6718#0 GAAAATCAATCTGATGAAGA-ATTACTTACATCTGCTGAATTACTGAAACGTTTTTATAC 119 consensus_6718#2 ------------------------------------------------------------ consensus_6718#3 ------------------------------------------------------------ consensus_6718#1 -----------TAATAATCATATTATATGCAACCATTGAACAAG-AAAACCTTTCAACAT 48 consensus_6718#0 CCTGT---ACTATTAACTGCACACTCTGACCTGTTAGGTCTTATTCAAGCTGAAGTTAAT 176 consensus_6718#2 ----------------------------ACCTGTANGGTCTTATTCAAGCTGAAGTTAAT 32 consensus_6718#3 ------------------------------------------------------------ consensus_6718#1 GCTTTTAAACTTGTTATTCAGCATTTATTTCTGTTTATTCTTATATTACTTCTATTTGAT 108 consensus_6718#0 CAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGA 236 consensus_6718#2 CAATTAGAAGCTGAAGCTAAAACTTTACCAGCTGGTGATTTGAAAGCTCAAATTAAACGA 92 consensus_6718#3 ------------------------------------------------------------ consensus_6718#1 AGATTGAACGATTT-GCTGAACATATTTTAGCTGAAGAAC-GTTCGCGTAATTCAAATGA 166 consensus_6718#0 ATTCAAG-------------------------CGATTACATGCGTATTCGGATGAAAAAG 271 consensus_6718#2 ATTCAAGTTGAAAGAATCCGATTTATCATGGTCGATTACATGCGTATTCGGATGAAAAAG 152 consensus_6718#3 ------------------------------------------------------------ consensus_6718#1 ATC-------------------------------ACCACATTTGACAGTGGAAGAATATC 195 consensus_6718#0 ATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCG--CGTAATTCAAATGAAT 329 consensus_6718#2 ATTGAACGATTTGCTGAACATATTTTAGCTGAAGAACGTTCG--CGTAATTCAAATGAAT 210 consensus_6718#3 --------------------------------------------CGTAATTCAAATGAAT 16 consensus_6718#1 TTTTTGCAAAATCGTAAATTTTCAGTGATTTTCTGTTTTTTTGTTGTTGTCAGAATGAAA 255 ** * ****** consensus_6718#0 CACCACATTTGACAGTGG-AAGAATATCTTTTTGCAAAATCATA---------------- 372 consensus_6718#2 CACCACATTTGACAGTGG-AAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGA 269 consensus_6718#3 CACCACATT-GACAGTGGGAAGAATATCTTTTTGCAAAATCATATTCAAATAGTATTCGA 75 consensus_6718#1 GAAT-CAGTTAACTGTTT----AGCATTATTTTAGATATTCAAAT------AGTATTCGA 304 * ** * ** ** * ** **** * * *** * consensus_6718#0 ----------AAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGAC 422 consensus_6718#2 GAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGAC 329 consensus_6718#3 GAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGAC 135 consensus_6718#1 GAATATTTGAAAACTACAATTATTAATCGTTTACCAGCTAATATGCAGTCTATTAAAGAC 364 ************************************************** consensus_6718#0 GAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAA 482 consensus_6718#2 GAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAA 389 consensus_6718#3 GAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCAGTGAAAAAA 195 consensus_6718#1 GAAGAGTTAACATTTCATCCAAACCCAAACAGTTATGTATTTTGTCAGTCACTGAAAAAA 424 *************************************************** ******** consensus_6718#0 ATTGATTATATAGAAGTATTCGATCATAGTTCAGATGNNNNNNNNNNNNNNNNNNNNNNN 542 consensus_6718#2 ATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTT 449 consensus_6718#3 ATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACAAATTAAAATT-- 253 consensus_6718#1 ATTGATTATATAGAAGTATTCGATCATAGTTCAGATGGAACTCAAACTTCGGTATCACTT 484 ************************************* consensus_6718#0 NNNNNNGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAA 602 consensus_6718#2 ACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAA 509 consensus_6718#3 ------------------------------------------------------------ consensus_6718#1 ACCTTGGAACCTGGCGCTCAACATCTCTTACCCTACAGTTGCATTCGGCCGTATGTAGAA 544 consensus_6718#0 GGTGGCGATGTTATTTTAATCTAATACTAGACTGGNAGTGAGTCTCACGATTAGATTCTA 662 consensus_6718#2 GGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTA 569 consensus_6718#3 ------------------------------------------------------------ consensus_6718#1 GGTGGCGATGTTATTTTAATCTAATACTAGACTGAGTTGAGTTCTCACGATTAGATTCTA 604 consensus_6718#0 TTTTTCTAGCAACTGGTTTTGTTTGACGGGTTTTGTGTTTAAAGTGTTTTTTGTACTAAA 722 consensus_6718#2 TTTTTCTAGCAACTGTTTTTGTTTGACGGGTTT-GTGTTTAAAGTGTTTTTTGTACTAAA 628 consensus_6718#3 ------------------------------------------------------------ consensus_6718#1 TTTTTCTAGCAACTGTTTTTGTTTGACGGGTTT-GTGTTTAAAGTGTTTTTTATACTAAA 663 consensus_6718#0 ATCT----- 726 consensus_6718#2 ATCTA---- 633 consensus_6718#3 --------- consensus_6718#1 ATCTACTAT 672 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||