cluster # 6723

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Schistosoma mansoni
cluster # 6723 cluster # 6723 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6723#0 length = 501 sequences # 3

consensus_6723#1 length = 177 sequences # 1

consensusID : consensus_6723#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 501
fasta sequence

                              [TGTATATATACCCCTTAAAAACGCAACACAGTAAGAAAGCGCAAATAACAGAAATCCAAATTTCAAGATTTCAATGAGATTCAGGGTAAGAAACATGCACGAGTAAGGAACAGTTTGTACACTTTGCATAAGGGACTTGGCATAGTACAGCAAGGTCGTCCAAGACATGACTTCCACCGCAGCGACAAGGAAACCAATAACAGTGACACTCTTGATTGTGGGATTGTAAGTCTACGTCATGGACGGATTTGCCTTCATCATGAAATTGGTCAAAAGATACATCAGACTGTATAGGCAGCCCAGCGGAGTGAGATATAATTTTATGTTGTCTCAACAAGGCGTCATAAGCTTTACGTTTTTCTGGACATCGCAAAACACTCCATGCCCTTTCTATGACCAAGAATTTTGTATTTGAAACATCTGGGTTTTTATCTGGATGGAACTTAAGTCGAGCTTCGTTAACGATTCGTTTGATTTCGTCTTCCGTAGCATCCTGCGTGC]

[+] EMBL CD075045             [TGTATATATACCCCTTAAAAACGCAACACAGTAAGAAAGCGCAAATAACAGAAATCCAAATTTCAAGATTTCAATGAGATTCAGGGTAAGAAACATGCACGAGTAAGGAACAGTTTGTACACTTTGCATAAGGGACTTGGCATAGTACAGCAAGGTCGTCCAAGACATGACTTCCACCGCAGCGACAAGGAAACCAATAACAGTGACACTCTTGATTGTGGGATTGTAAGTCTACGTCATGGACGGATTTGCCTTCATCATGAAATTGGTCAAAAGATACATCAGACTGTATAGGCAGCCCAGCGGAGTGAGATATAATTTTATGTTGTCTCAACAAGGCGTCATAAGCTTTACGTTTTTCTGGACATCGCAAAACACTCCATGCCCTTTCTATGACCAAGAATTTTGTATTTGAAACATCTGGGTTTTTATCTGGATGGAACTTAAGTCGAGCTTCGTTAACGATTCGTTTGATTTCGTCTTCCGTAGCAT         ]
[+] EMBL CD074763             [TGTATATATA TTCTTAAAAACGCAGCACAGTAAGAAAGCGCAAATAACAGAAAAGCAAATTTCAAGATTTCAATGAGATTCAGGGTAAGAAACATGCACGAGTAAGGAACAGTTTGTACACTTTGCATAAGGGACTTGGCATAGTACAGCAAGGTCGTCCAAGACATGACTTCCACCGCAGCGACAAGGAAACCAATAACAGTGACACTCTTGATTGTGGGATTGTAAGTCTACGTCATGGACG                                                                                                                                                                                                                                                                ]
[-] EMBL CD081214             [                                                                                                                                                                                                                                                                    TGAAATTGGTCAAAAGATACATCAGACTGTATAGGCAGCCCAGCGGAGTGAGATATAATTTTATGTTGTCTCAACAAGGCGTCATAAGCTTTACGTTTTTCTGGACATCGCAAAACACTCCATGCCCTTTCTATGACCAAGAATTTTGTATTTGAAACATCTGGGTTTTTATNTGGATGGAACTTAAGTCGAGCTTCGTTAACGATTCG TTGATTT GTCTT CGTAGCATCCTGCGTGC]




>consensus_6723#0
TGTATATATACCCCTTAAAAACGCAACACAGTAAGAAAGCGCAAATAACAGAAATCCAAA
TTTCAAGATTTCAATGAGATTCAGGGTAAGAAACATGCACGAGTAAGGAACAGTTTGTAC
ACTTTGCATAAGGGACTTGGCATAGTACAGCAAGGTCGTCCAAGACATGACTTCCACCGC
AGCGACAAGGAAACCAATAACAGTGACACTCTTGATTGTGGGATTGTAAGTCTACGTCAT
GGACGGATTTGCCTTCATCATGAAATTGGTCAAAAGATACATCAGACTGTATAGGCAGCC
CAGCGGAGTGAGATATAATTTTATGTTGTCTCAACAAGGCGTCATAAGCTTTACGTTTTT
CTGGACATCGCAAAACACTCCATGCCCTTTCTATGACCAAGAATTTTGTATTTGAAACAT
CTGGGTTTTTATCTGGATGGAACTTAAGTCGAGCTTCGTTAACGATTCGTTTGATTTCGT
CTTCCGTAGCATCCTGCGTGC

consensusID : consensus_6723#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [NNNNNNNTATTCTTAAAAACGCAGCACAGTAAGAAAGCGCAAATAACAGAAAAGCAAATTTCAAGATTTCAATGAGATTCAGGGTAAGAAACATGCACGAGTAAGGAACAGTTTGTACACTTTGCATAAGGGACTTGGCATAGTACAGCAAGGTCGTCCAAGNNNNNNNNNNNNNNN]

[-] EMBL CD080929             [NNNNNNNTATTCTTAAAAACGCAGCACAGTAAGAAAGCGCAAATAACAGAAAAGCAAATTTCAAGATTTCAATGAGATTCAGGGTAAGAAACATGCACGAGTAAGGAACAGTTTGTACACTTTGCATAAGGGACTTGGCATAGTACAGCAAGGTCGTCCAAGNNNNNNNNNNNNNNN]




>consensus_6723#1
NNNNNNNTATTCTTAAAAACGCAGCACAGTAAGAAAGCGCAAATAACAGAAAAGCAAATT
TCAAGATTTCAATGAGATTCAGGGTAAGAAACATGCACGAGTAAGGAACAGTTTGTACAC
TTTGCATAAGGGACTTGGCATAGTACAGCAAGGTCGTCCAAGNNNNNNNNNNNNNNN

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6723#0      TGTATATATACCCCTTAAAAACGCAACACAGTAAGAAAGCGCAAATAACAGAAATCCAAA 60
consensus_6723#1      -NNNNNNNTATTC-TTAAAAACGCAGCACAGTAAGAAAGCGCAAATAACAGAAAAGCAAA 58
                              **  * *********** ****************************  ****

consensus_6723#0      TTTCAAGATTTCAATGAGATTCAGGGTAAGAAACATGCACGAGTAAGGAACAGTTTGTAC 120
consensus_6723#1      TTTCAAGATTTCAATGAGATTCAGGGTAAGAAACATGCACGAGTAAGGAACAGTTTGTAC 118
                      ************************************************************

consensus_6723#0      ACTTTGCATAAGGGACTTGGCATAGTACAGCAAGGTCGTCCAAGACATGACTTCCACCGC 180
consensus_6723#1      ACTTTGCATAAGGGACTTGGCATAGTACAGCAAGGTCGTCCAAGNNNNNNNNNNNNNNN- 177
                      ********************************************                

consensus_6723#0      AGCGACAAGGAAACCAATAACAGTGACACTCTTGATTGTGGGATTGTAAGTCTACGTCAT 240
consensus_6723#1      ------------------------------------------------------------
                                                                                  

consensus_6723#0      GGACGGATTTGCCTTCATCATGAAATTGGTCAAAAGATACATCAGACTGTATAGGCAGCC 300
consensus_6723#1      ------------------------------------------------------------
                                                                                  

consensus_6723#0      CAGCGGAGTGAGATATAATTTTATGTTGTCTCAACAAGGCGTCATAAGCTTTACGTTTTT 360
consensus_6723#1      ------------------------------------------------------------
                                                                                  

consensus_6723#0      CTGGACATCGCAAAACACTCCATGCCCTTTCTATGACCAAGAATTTTGTATTTGAAACAT 420
consensus_6723#1      ------------------------------------------------------------
                                                                                  

consensus_6723#0      CTGGGTTTTTATCTGGATGGAACTTAAGTCGAGCTTCGTTAACGATTCGTTTGATTTCGT 480
consensus_6723#1      ------------------------------------------------------------
                                                                                  

consensus_6723#0      CTTCCGTAGCATCCTGCGTGC 501
consensus_6723#1      ---------------------