These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6725#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 768 fasta sequence [GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC] [+] EMBL CD081113 [GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTNTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTNCGAAACCGAATGCAGCACGACTTTATGTATAGCNGTTTGGTATATTAAATATTTT ] [-] EMBL CD074936 [ TTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC] [-] EMBL CD074803 [ ATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC] consensusID : consensus_6725#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNNCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTAAGGGTTNTAAACTNTATCTTCTATGGCTATCATTCAGTTNTTATGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACCCGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT] [+] EMBL CD080977 [GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNNCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTAAGGGTTNTAAACTNTATCTTCTATGGCTATCATTCAGTTNTTATGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACCCGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6725#0 GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGC 60 consensus_6725#1 -------------------GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGC 41 *************************************** consensus_6725#0 AATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATT 120 consensus_6725#1 AATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATT 101 ************************************************************ consensus_6725#0 TCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGC 180 consensus_6725#1 TCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNN-CGAATTCCAATCCTCCTTTTTGC 160 ************* *********************** consensus_6725#0 TAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCT 240 consensus_6725#1 TAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCT 220 ************************************************************ consensus_6725#0 GGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGG 300 consensus_6725#1 GGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTT---------------------- 258 ************************************** consensus_6725#0 ATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGT 360 consensus_6725#1 --TAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGT 316 ********************************************************** consensus_6725#0 GATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTG 420 consensus_6725#1 GATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTG 376 ************************************************************ consensus_6725#0 CTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAAT 480 consensus_6725#1 CTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAAT 436 ****** ****************************** consensus_6725#0 GTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATT 540 consensus_6725#1 GTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATT 496 ************************************************************ consensus_6725#0 AGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTA 600 consensus_6725#1 AGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGT--------------- 541 ********************************************* consensus_6725#0 GAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTA 660 consensus_6725#1 ---------------AAGGGTTNTAAA-CTNTATCTTCTATGGCTATCATTCAGTTNTTA 585 ******* **** ** ************************* *** consensus_6725#0 TGATTACAAAAGAGCCCTG-TTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACC 719 consensus_6725#1 TGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACC 645 ***** * ******** ******** ****************************** consensus_6725#0 GAATGCAGCACGACTTTATGTATAGCGTTTT-GGTATATTAAATATTTTC 768 consensus_6725#1 CGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT- 694 ***************************** ***************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||