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Schistosoma mansoni
cluster # 6725 cluster # 6725       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6725#0 length = 768 sequences # 3  
consensus_6725#1 length = 694 sequences # 1  

consensusID : consensus_6725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 768
fasta sequence
                              [GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC]

[+] EMBL CD081113             [GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTNTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTNCGAAACCGAATGCAGCACGACTTTATGTATAGCNGTTTGGTATATTAAATATTTT ]
[-] EMBL CD074936             [                                                                                                                      TTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC]
[-] EMBL CD074803             [                                                                                                                                                                ATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC]


>consensus_6725#0 GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGC AATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATT TCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGC TAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCT GGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGG ATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGT GATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTG CTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAAT GTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATT AGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTA GAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTA TGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCG AATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC



consensusID : consensus_6725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence
                              [GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNNCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTAAGGGTTNTAAACTNTATCTTCTATGGCTATCATTCAGTTNTTATGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACCCGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT]

[+] EMBL CD080977             [GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNNCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTAAGGGTTNTAAACTNTATCTTCTATGGCTATCATTCAGTTNTTATGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACCCGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT]


>consensus_6725#1 GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGAT AGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGNNNNNN NNNNNNNNNNNNNNNNNCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGA ATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAAT CATGGAGGATTTTCGCTTTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAA GTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGA CGTGTCATCTGCTTTGCTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGA AATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTT TATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAG TAAGGGTTNTAAACTNTATCTTCTATGGCTATCATTCAGTTNTTATGATTTACANAGAGC CCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACCCGATGCAGCACGACT TTATGTATAGCGTTTTTGGTATATTAAATATTTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6725#0      GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGC 60
consensus_6725#1      -------------------GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGC 41
                                           ***************************************

consensus_6725#0      AATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATT 120
consensus_6725#1      AATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATT 101
                      ************************************************************

consensus_6725#0      TCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGC 180
consensus_6725#1      TCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNN-CGAATTCCAATCCTCCTTTTTGC 160
                      *************                        ***********************

consensus_6725#0      TAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCT 240
consensus_6725#1      TAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCT 220
                      ************************************************************

consensus_6725#0      GGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGG 300
consensus_6725#1      GGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTT---------------------- 258
                      **************************************                      

consensus_6725#0      ATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGT 360
consensus_6725#1      --TAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGT 316
                        **********************************************************

consensus_6725#0      GATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTG 420
consensus_6725#1      GATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTG 376
                      ************************************************************

consensus_6725#0      CTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAAT 480
consensus_6725#1      CTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAAT 436
                      ******                        ******************************

consensus_6725#0      GTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATT 540
consensus_6725#1      GTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATT 496
                      ************************************************************

consensus_6725#0      AGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTA 600
consensus_6725#1      AGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGT--------------- 541
                      *********************************************               

consensus_6725#0      GAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTA 660
consensus_6725#1      ---------------AAGGGTTNTAAA-CTNTATCTTCTATGGCTATCATTCAGTTNTTA 585
                                     ******* **** ** ************************* ***

consensus_6725#0      TGATTACAAAAGAGCCCTG-TTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACC 719
consensus_6725#1      TGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACC 645
                      *****   * ********  ********  ******************************

consensus_6725#0      GAATGCAGCACGACTTTATGTATAGCGTTTT-GGTATATTAAATATTTTC 768
consensus_6725#1      CGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT- 694
                        ***************************** ***************** 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)