cluster # 6725

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Schistosoma mansoni
cluster # 6725 cluster # 6725 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6725#0 length = 768 sequences # 3

consensus_6725#1 length = 694 sequences # 1

consensusID : consensus_6725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 768
fasta sequence

                              [GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC]

[+] EMBL CD081113             [GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTNTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTNCGAAACCGAATGCAGCACGACTTTATGTATAGCNGTTTGGTATATTAAATATTTT ]
[-] EMBL CD074936             [                                                                                                                      TTTCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC]
[-] EMBL CD074803             [                                                                                                                                                                ATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGGATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTAGAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTATGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCGAATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC]




>consensus_6725#0
GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGC
AATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATT
TCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGC
TAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCT
GGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGG
ATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGT
GATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTG
CTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAAT
GTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATT
AGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTA
GAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTA
TGATTACAAAAGAGCCCTGTTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACCG
AATGCAGCACGACTTTATGTATAGCGTTTTGGTATATTAAATATTTTC

consensusID : consensus_6725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 694
fasta sequence

                              [GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNNCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTAAGGGTTNTAAACTNTATCTTCTATGGCTATCATTCAGTTNTTATGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACCCGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT]

[+] EMBL CD080977             [GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNNCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTGCTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTAAGGGTTNTAAACTNTATCTTCTATGGCTATCATTCAGTTNTTATGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACCCGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT]




>consensus_6725#1
GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGCAATCATTTATGTAGTAGAT
AGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATTTCAACAACTTTTGNNNNNN
NNNNNNNNNNNNNNNNNCGAATTCCAATCCTCCTTTTTGCTAACAAAATGGATTTACCGA
ATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCTGGAAAAATTGAGAAATAAAT
CATGGAGGATTTTCGCTTTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAA
GTACTAACTAAAATGTGATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGA
CGTGTCATCTGCTTTGCTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGA
AATTTACGTTCAAAATGTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTT
TATGCTTTTAATCATTAGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAG
TAAGGGTTNTAAACTNTATCTTCTATGGCTATCATTCAGTTNTTATGATTTACANAGAGC
CCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACCCGATGCAGCACGACT
TTATGTATAGCGTTTTTGGTATATTAAATATTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6725#0      GAGGCCANAATTTGGCACGAGGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGC 60
consensus_6725#1      -------------------GAGGGAAATTTATGGGAAAAGTTCTATAAGGAATGCGAGGC 41
                                           ***************************************

consensus_6725#0      AATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATT 120
consensus_6725#1      AATCATTTATGTAGTAGATAGTTCCGATGAACTGAGACTTACTGTTGTAGAAGACGAATT 101
                      ************************************************************

consensus_6725#0      TCAACAACTTTTGAAACATCCAGATATTTGCAATAGGCGAATTCCAATCCTCCTTTTTGC 180
consensus_6725#1      TCAACAACTTTTGNNNNNNNNNNNNNNNNNNNNNNN-CGAATTCCAATCCTCCTTTTTGC 160
                      *************                        ***********************

consensus_6725#0      TAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCT 240
consensus_6725#1      TAACAAAATGGATTTACCGAATTCTATTACAGTCATAGAAATAGTCAAGATTCTTGGTCT 220
                      ************************************************************

consensus_6725#0      GGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTTCGAATGCCATAAACGGCGAAGG 300
consensus_6725#1      GGAAAAATTGAGAAATAAATCATGGAGGATTTTCGCTT---------------------- 258
                      **************************************                      

consensus_6725#0      ATTAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGT 360
consensus_6725#1      --TAAATGAAGGTTTGATGTGGTTATTTGGACAACTGAAACAAAGTACTAACTAAAATGT 316
                        **********************************************************

consensus_6725#0      GATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTG 420
consensus_6725#1      GATAAAGATTCTGATAGAGAACAAATATAGGTGACCCATTAGGACGTGTCATCTGCTTTG 376
                      ************************************************************

consensus_6725#0      CTGAAAAGATAGAAGACTGTTGGAATTTGTGTCAAAACGCTAGAAATTTACGTTCAAAAT 480
consensus_6725#1      CTGAAANNNNNNNNNNNNNNNNNNNNNNNNGTCAAAACGCTAGAAATTTACGTTCAAAAT 436
                      ******                        ******************************

consensus_6725#0      GTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATT 540
consensus_6725#1      GTAACAAAATCCAGAACAAATCTAAAGATAGGAAACCAGATTTTTATGCTTTTAATCATT 496
                      ************************************************************

consensus_6725#0      AGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGTTTATAGAGATGACTA 600
consensus_6725#1      AGTACTTTTATGTTATCTTACCGCATTTATTTCGAACGTTAAAGT--------------- 541
                      *********************************************               

consensus_6725#0      GAATTTACTGGATAAAAGGGTTTTAAAACTTTATCTTCTATGGCTATCATTCAGTTTTTA 660
consensus_6725#1      ---------------AAGGGTTNTAAA-CTNTATCTTCTATGGCTATCATTCAGTTNTTA 585
                                     ******* **** ** ************************* ***

consensus_6725#0      TGATTACAAAAGAGCCCTG-TTTTGATTCAAATAATTTTTGATTCTTATCTTCCGAAACC 719
consensus_6725#1      TGATTTACANAGAGCCCTNGTTTTGATTTCAATAATTTTTGATTCTTATCTTCCGAAACC 645
                      *****   * ********  ********  ******************************

consensus_6725#0      GAATGCAGCACGACTTTATGTATAGCGTTTT-GGTATATTAAATATTTTC 768
consensus_6725#1      CGATGCAGCACGACTTTATGTATAGCGTTTTTGGTATATTAAATATTTT- 694
                        ***************************** *****************