These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6727#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 890 fasta sequence [GGTCCATATACAAAATACGCAACATAGCTCCATTATAATCGTACCTGATTCAGGG-TTTGTGTAAAGTTAAAGTCTAAAAATCAGGAAAAAGTGTTTGTGAACATATGTACTTCTGAGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAAGATTAATACTTAATGATATTGATAACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTCAAATCATCAGAATTGTTTGAGGCATTTTTGATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGGTAAACCACAAGAACAATGTATTCGAACTTCTAGTCGTCCTGCAATTATTGAAATGAATGGTTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATACTCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGTAGCACGAATAATCATGCCAAAGCTGATTTCTAGTGATGGATTAGACTTACAAGTTGGTGCTGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAACCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAATCGAAATACAAAAATATTAACAGTCACAATGCCGGTGTCAACTGTTCAGGGATGATAAGAATTTCACTAGATCCTCGTCAATTTGTTGTGTATTATTTTTACTTTGAATTATTTCAATGAGATTTAAATATAATC] [+] EMBL CD086992 [GGTCCATATACAAAATACGCAACATAGCTCCATTATAATCGTACCTGATTCAGGG TTTGTGTAAAGTTAAAGTCTAAAAATCAGGAAAAAGTGTTTGTGAACATATGTACTTCTGAGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAAGATTAATACTTAATGATATTGATAACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTCAAATCATCAGAATNGTTTGAGGCATTTTTGATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTG ] [+] EMBL CD139604 [ GATTCAGGGTTTTGTGTAAAGTTAAAGTCTAAAAATCAGGAAAAAGTGTTTGTGAACATATGTACTTCTGAGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAAGATTAATACTTAATGATATTGATAACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTGCCAAAAAGTCAAATCATCAGAATTGTTTGAGGCATTTTTGATGACAGTGAT ] [-] EMBL CD074847 [ AATCAATCCACAATTCTACCAAAAAGTCAAATCATCAGAATTGTTTGAGGCATTTTTGATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGGTAAACCACAAGAACAATGTATTCGAACTTCTAGTCGTCCTGCAATTATTGAAATGAATGGTTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATACTCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGTAGCACGAATAATCATGCCAAAGCTGATTTCTAGTGATGGATTAGACTTACAAGTTGGTGCTGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAACCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAATCGAAATACAAAAATATTAACAGTCACAATGCCGGTGTCAACTGTTCAGGGATGATAAGAATTTCACTAGATCCTCGTCAATTTGTTGTGTATTATTTTTACTTTGAATTATTTCAATGAGATTTAAATATAATC] consensusID : consensus_6727#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [GGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTCAAATCATNNNNNNNNNNNNNNNNNNNNNNNNATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGGTAAACCACAAGAACAATGTATTCGAACTTCTAGTCTTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATACTCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGTAGCACGAATAATCATGCCAAAGNNNNNNNNNNNNNNNNGATTAGACTTACAAGTTGGTGCTGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAACCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAAATCGAATACANAAATATTAACAGTCACAATGGCCGTATCCTCGNCAATNTGNTGNGTATTATTTTACTTTGAATTATTCATGAGATTAAATATATCTT] [+] EMBL CD081021 [GGAAAGTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCAGCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTCAAATCATNNNNNNNNNNNNNNNNNNNNNNNNATGACAGTGATATTTGAAGGCTTGGAAAATAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGGTAAACCACAAGAACAATGTATTCGAACTTCTAGTCTTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATACTCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGTAGCACGAATAATCATGCCAAAGNNNNNNNNNNNNNNNNGATTAGACTTACAAGTTGGTGCTGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAACCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAAATCGAATACANAAATATTAACAGTCACAATGGCCGTATCCTCGNCAATNTGNTGNGTATTATTTTACTTTGAATTATTCATGAGATTAAATATATCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6727#0 GGTCCATATACAAAATACGCAACATAGCTCCATTATAATCGTACCTGATTCAGGGTTTGT 60 consensus_6727#1 ------------------------------------------------------------ consensus_6727#0 GTAAAGTTAAAGTCTAAAAATCAGGAAAAAGTGTTTGTGAACATATGTACTTCTGAGAAA 120 consensus_6727#1 -------------------------------------------------------GGAAA 5 **** consensus_6727#0 GTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAAGATTAATACTTAATGATATTGAT 180 consensus_6727#1 GTCCCAATCCCAAAGGATTTAACTGAGGATGAATTAA----------------------- 42 ************************************* consensus_6727#0 AACTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCA 240 consensus_6727#1 --CTCCCCACCCTTCAAAGTCCCAATGTGCATTGGAGAACCGCACGCTGAAGTCGATTCA 100 ********************************************************** consensus_6727#0 GCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTC 300 consensus_6727#1 GCTCAGAAAGGCTGTACCGCTTATGATGTCATAATCAATCCACAATTCTACCAAAAAGTC 160 ************************************************************ consensus_6727#0 AAATCATCAGAATTGTTTGAGGCATTTTTGA-TGACAGTGATATTTGAAGGCTTGGAAAA 359 consensus_6727#1 AAATCATNNNNNNNNNNNNNNNNNNNNNNNNATGACAGTGATATTTGAAGGCTTGGAAAA 220 ******* **************************** consensus_6727#0 TAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGG 419 consensus_6727#1 TAAGTATGGTATCGAACTTGAAAGAAGTTGGACTGTTTTAAAGAATAAGAAATGTATGGG 280 ************************************************************ consensus_6727#0 TAAACCACAAGAACAATGTATTCGAACTTCTAGTCGTCCTGCAATTATTGAAATGAATGG 479 consensus_6727#1 TAAACCACAAGAACAATGTATTCGAACTTCTAGTC------------------------- 315 *********************************** consensus_6727#0 TTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATAC 539 consensus_6727#1 TTCTCAACCTCCCAAACCAAAAGTGATAGAGTTACCTGATCCACCTTTTAAAAGTGATAC 375 ************************************************************ consensus_6727#0 TCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGT 599 consensus_6727#1 TCCCAAATATGAAATAATAAAGGTTAAGGATGATGTTAGTGGAGAAGTGCGTTGCTTAGT 435 ************************************************************ consensus_6727#0 AGCACGAATAATCATGCCAAAGCTGATTTCTAGTGATGGATTAGACTTACAAGTTGGTGC 659 consensus_6727#1 AGCACGAATAATCATGCCAAAGNNNNNNNNNNNNNNNNGATTAGACTTACAAGTTGGTGC 495 ********************** ********************** consensus_6727#0 TGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAA 719 consensus_6727#1 TGATCTCCTTCAATTAAATAGTCGTGATCAGATTTACTCACTGGAGTTGCCACTCAATAA 555 ************************************************************ consensus_6727#0 CCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAATCGAAATACAAAAATATTAACAGT 779 consensus_6727#1 CCTTGTCAATGAAGAAACTACTGTAGCTGAATTTAAATCGAATACANAAATATTAACAGT 615 ************************************ ****** ************* consensus_6727#0 CACAATGCCGGTGTCAACTGTTCAGGGATGATAAGAATTTCACTAGATCCTCGTCAATTT 839 consensus_6727#1 CACAATGGCCGT----------------------------------ATCCTCGNCAATNT 641 ******* * ** ******* **** * consensus_6727#0 GTTGTGTATTATTTTTACTTTGAATTATTTCAATGAGATTTAAATATAATC- 890 consensus_6727#1 GNTGNGTATTATTTT-ACTTTGAATTATTC--ATGAGATT-AAATATATCTT 689 * ** ********** ************* ******** ******* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||