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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6730#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 792 fasta sequence
[GCGGCCAANAATTTGGCACGAGGGAGAAAATGCAGATATATTTTGTATACAAGAGACTAAGTGCCCTTTGCATAAAATTCCATCTGAAGCCAAAGTTCCATCATACCAATCATTTTGGTCGTCTGCAGACAAGGCCGGATATGCGGGAACAGCTTTATTTTCGAAAATCTCTCCGATAAAAGTGACGTATGGTATAGGCAAGAAAATGCATGACGATGAGGGGCGTGTTATTACCGCAGAATACGACAAATTTTACCTAGTTACTGCTTATGTGCCAAACTCAGGACAGGGGTTGATTCGTCTACCATATCGTGAAAAGGAATGGGATCCTGATTTCCTTGAATACCTGCGCAAACTTGATTCTACAAAACCTGTCATCGTTTGTGGTGACCTTAACGTAGCTCACGAGGAGATCGATCTAGCTCGACCAGAAACAAATCATAAAACTGCTGGATTTACTGATCAGGAGCGATCAGGTTTCACAAAATTGTTATCGTCAGCCAATTTAATTGATACCTATCGTCATTTTTACCCAGACCGTCGAGGAGTGTATTCTTTTTGGAGCTATCGAACAGCAGCGCGCTCAATCAATAATGGGTGGCGTTTGGATTATTTCTTGGTATCTGAACGAATTTTAGCAAATATCAGTGATCAGGAAATACGTTGTGGGGTTACCGGAAGTGATCACTGTCCAGTTGTTCTATATCTTCAAATCTAAAACTCCATTTAACAAGATCTATTCAAACAGATTTCTATCAATAGTATTTATAAATACCA-GAATAAATATATTNT]
[+] EMBL CD081077 [GCGGCCAANAATTTGGCACGAGGGAGAAAATGCAGATATATTTTGTATACAAGAGACTAAGTGCCCTTTGCATAAAATTCCATCTGAAGCCAAAGTTCCATCATACCAATCATTTTGGTCGTCTGCAGACAAGGCCGGATATGCGGGAACAGCTTTATTTTCGAAAATCTCTCCGATAAAAGTGACGTATGGTATAGGCAAGAAAATGCATGACGATGAGGGGCGTGTTATTACCGCAGAATACGACAAATTTTACCTAGTTACTGCTTATGTGCCAAACTCAGGACAGGGGTTGATTCGTCTACCATATCGTGAAAAGGAATGGGATCCTGATTTCCTTGAATACCTGCGCAAACTTGATTCTACAAAACCTGTCATCGTTTGTGGTGACCTTAACGTAGCTCACGAGGAGATCGATCTAGCTCGACCAGAAACAAATCATAAAACTGCTGGATTTACTGATCAGGAGCGATCAGGTTTCACAAAATTGTTATCGTCAGCCAATTTAATTGATACCTATCGTCATTTTTACCCAGACCGTCGAGGAGTGTATTCTTTTTGGAGCTATCGAACAGCAGCGCGCTCAATCAATAATGGGTGGCGTTTGGATTATTTCTTGGTATCTGAACGAATTTTAGCAAATATCAGTGATCAGGAAATACGTTGTGGGGTTACCGGAAGTGATCACTGTCCAGTTGTTCTATATCTTCAAATCTAAAACTCCATTTAACAAGATCTATTCNAACAGATTTCTATCAATAGTATTTATAAATACCANNGAT AATATATTN ]
[-] EMBL CD074899 [ AAATCTCTCCGATAAAAGTGACGTATGGTATAGGCAAGAAAATGCATGACGATGAGGGGCGTGTTATTACCGCAGAATACGACAAATTTTACCTAGTTACTGCTTATGTGCCAAACTCAGGACAGGGGTTGATTCGTCTACCATATCGTGAAAAGGAATGGGATCCTGATTTCCTTGAATACCTGCGCAAACTTGATTCTACAAAACCTGTCATCGTTTGTGGTGACCTTAACGTAGCTCACGAGGAGATCGATCTAGCTCGACCAGAAACAAATCATAAAACTGCTGGATTTACTGATCAGGAGCGATCAGGTTTCACAAAATTGTTATCGTCAGCCAATTTAATTGATACCTATCGTCATTTTTACCCAGACCGTCGAGGAGTGTATTCTTTTTGGAGCTATCGAACAGCAGCGCGCTCAATCAATAATGGGTGGCGTTTGGATTATTTCTTGGTATCTGAACGAATTTTAGCAAATATCAGTGATCAGGAAATACGTTGTGGGGTTACCGGAAGTGATCACTGTCCAGTTGTTCTATATCTTCAAATCTAAAACTCCATTTAACAAGATCTATTCAAACAGATTTCTATCAATAGTATTTATAAATACCA GAATAAATATATTtt]
[-] EMBL CD075866 [ TCGATCTAGCTCGACCAGAAACAAATCATAAAACTGCTGGATTTACTGATCAGGAGCGATCAGGTTTCACAAAATTGTTATCGTCAGCCAATTTAATTGATACCTATCGTCATTTTTACCCAGACCGTCGAGGAGTGTATTCTTTTTGGAGCTATCGAACAGCAGCGCGCTCAATCAATAATGGGTGGCGTTTGGATTATTTCTTGGTATCTGAACGAATTTTAGCAAATATCAGTGATCAGGAAATACGTTGTGGGGTTACCGGAAGTGATCACTGTCCAGTTGTTCTATATCTTCAAATCTAAAACTCCATTTAACAAGATCTATTCAAACAGATTTCTATCAATAGTATTTATAAATACCA GAATAAATATATT ]
consensusID : consensus_6730#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[AGATTGGCACGAGGGAGCGACTTCGAATGTTTGCCCGCAAAAAAACTGTCGAGAAAAAGCCACGCAACCAGTCTCCTAAAGATAAGGGCCTGGAGTCTCCCGAAACTCAAAACTTAGACTGGTGTACTAGATATCCTGGTTCATCACCTGAGTTAGCAAACCCTCTGTCATCCAAATGGAATTTTAAGATAGTATCCTGGAATGTCAACGGCATACGGGCTGTCATTAAAAATAATGGCATGGAGTATATTAAGAAAGAAAATGCAGATATATTTTGTATACAAGAGACTAAGTGCCCTTTGCATAAAATTCCATCTGAAGCCAAAGTTCCATCATACCAATCATTTTGGTCGTCTGCAGACAAGGCCGGATATGCGGGAACAGCTTTATTTTCGAAAATCTCTCCGATAAAAGTGACGTATGGTATACGCAAGAAAATGCATGACGATGAGGGGCGTGTTATTACCGCAGAATACGACAAATTTTACCTAGTTACTGCTTATGTGCCAAACTCAGGACAGGGGTTGATTCGTCTACCATATCGTGAAAAGGAATGGGATCCTGATTTCCTCGATACCTGCGCAGAC]
[+] EMBL CD082259 [AGATTGGCACGAGGGAGCGACTTCGAATGTTTGCCCGCAAAAAAACTGTCGAGAAAAAGCCACGCAACCAGTCTCCTAAAGATAAGGGCCTGGAGTCTCCCGAAACTCAAAACTTAGACTGGTGTACTAGATATCCTGGTTCATCACCTGAGTTAGCAAACCCTCTGTCATCCAAATGGAATTTTAAGATAGTATCCTGGAATGTCAACGGCATACGGGCTGTCATTAAAAATAATGGCATGGAGTATATTAAGAAAGAAAATGCAGATATATTTTGTATACAAGAGACTAAGTGCCCTTTGCATAAAATTCCATCTGAAGCCAAAGTTCCATCATACCAATCATTTTGGTCGTCTGCAGACAAGGCCGGATATGCGGGAACAGCTTTATTTTCGAAAATCTCTCCGATAAAAGTGACGTATGGTATACGCAAGAAAATGCATGACGATGAGGGGCGTGTTATTACCGCAGAATACGACAAATTTTACCTAGTTACTGCTTATGTGCCAAACTCAGGACAGGGGTTGATTCGTCTACCATATCGTGAAAAGGAATGGGATCCTGATTTCCTCGATACCTGCGCAGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6730#0 ------------------------------------------------------------
consensus_6730#1 AGATTGGCACGAGGGAGCGACTTCGAATGTTTGCCCGCAAAAAAACTGTCGAGAAAAAGC 60
consensus_6730#0 ------------------------------------------------------------
consensus_6730#1 CACGCAACCAGTCTCCTAAAGATAAGGGCCTGGAGTCTCCCGAAACTCAAAACTTAGACT 120
consensus_6730#0 ------------------------------------------------------------
consensus_6730#1 GGTGTACTAGATATCCTGGTTCATCACCTGAGTTAGCAAACCCTCTGTCATCCAAATGGA 180
consensus_6730#0 ------------------------------------------------------GCGGCC 6
consensus_6730#1 ATTTTAAGATAGTATCCTGGAATGTCAACGGCATACGGGCTGTCATTAAAAATAATGGCA 240
***
consensus_6730#0 AANAATTTGGCACGAGGGAGAAAATGCAGATATATTTTGTATACAAGAGACTAAGTGCCC 66
consensus_6730#1 TGGAGTATATTA--AGAAAGAAAATGCAGATATATTTTGTATACAAGAGACTAAGTGCCC 298
* * * * ** ******************************************
consensus_6730#0 TTTGCATAAAATTCCATCTGAAGCCAAAGTTCCATCATACCAATCATTTTGGTCGTCTGC 126
consensus_6730#1 TTTGCATAAAATTCCATCTGAAGCCAAAGTTCCATCATACCAATCATTTTGGTCGTCTGC 358
************************************************************
consensus_6730#0 AGACAAGGCCGGATATGCGGGAACAGCTTTATTTTCGAAAATCTCTCCGATAAAAGTGAC 186
consensus_6730#1 AGACAAGGCCGGATATGCGGGAACAGCTTTATTTTCGAAAATCTCTCCGATAAAAGTGAC 418
************************************************************
consensus_6730#0 GTATGGTATAGGCAAGAAAATGCATGACGATGAGGGGCGTGTTATTACCGCAGAATACGA 246
consensus_6730#1 GTATGGTATACGCAAGAAAATGCATGACGATGAGGGGCGTGTTATTACCGCAGAATACGA 478
********** *************************************************
consensus_6730#0 CAAATTTTACCTAGTTACTGCTTATGTGCCAAACTCAGGACAGGGGTTGATTCGTCTACC 306
consensus_6730#1 CAAATTTTACCTAGTTACTGCTTATGTGCCAAACTCAGGACAGGGGTTGATTCGTCTACC 538
************************************************************
consensus_6730#0 ATATCGTGAAAAGGAATGGGATCCTGATTTCCTTGAATACCTGCGCAAACTTGATTCTAC 366
consensus_6730#1 ATATCGTGAAAAGGAATGGGATCCTGATTTCCTCGA-TACCTGCGCAGAC---------- 587
********************************* ** ********** **
consensus_6730#0 AAAACCTGTCATCGTTTGTGGTGACCTTAACGTAGCTCACGAGGAGATCGATCTAGCTCG 426
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 ACCAGAAACAAATCATAAAACTGCTGGATTTACTGATCAGGAGCGATCAGGTTTCACAAA 486
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 ATTGTTATCGTCAGCCAATTTAATTGATACCTATCGTCATTTTTACCCAGACCGTCGAGG 546
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 AGTGTATTCTTTTTGGAGCTATCGAACAGCAGCGCGCTCAATCAATAATGGGTGGCGTTT 606
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 GGATTATTTCTTGGTATCTGAACGAATTTTAGCAAATATCAGTGATCAGGAAATACGTTG 666
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 TGGGGTTACCGGAAGTGATCACTGTCCAGTTGTTCTATATCTTCAAATCTAAAACTCCAT 726
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 TTAACAAGATCTATTCAAACAGATTTCTATCAATAGTATTTATAAATACCAGAATAAATA 786
consensus_6730#1 ------------------------------------------------------------
consensus_6730#0 TATTNT 792
consensus_6730#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||