These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6731#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 644 fasta sequence [CCTCCAGGCCAANAATTTGGCACGAGGACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTTATACACCAATACCCTATGTATGCTGATAAATAGTTATTGTTTCATTCTTTTCTCTATATTAGGCTTCTTTTTTATTTCTTCTATTATATTTCATTTCCTATCTTATTTACCTAGTCACATTCTTAAATATTATAAATTTTTAATGCCATTTCATTGATGCAAATATTTAAATATACAATAAACCTTGTTCAGTTCAACATTTATAGATTAATTAAACTGGTTAATAGTGGGATTTAATTTCAACTATTACTGGATATAAATATATATATTTCCATGGCCTCTTTCATTTTATAAATGTAACATCATCTTATTTTATGCTTATGATATGAATAAAAATTATTTAGCGATTTTATTTCAAAATATACCCTCACTATCTACTTATTATGATACATTTTTTTCCTTGATTTTCATTACAGTAACCACATACATATAAAGACGGAGAACATGTTATGTAGTTCATGAATATTATTTTAGAAAAATTAAACCAAGTTTTTTTTTTACCAAATCAATCTCTTGTTTGATATTTTCACTAAGATTCTATTTTAAAAAAGTACTCATGAGCGTGTTTTTT] [+] EMBL CD081087 [CCTCCAGGCCAANAATTTGGCACGAGGACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTTATACACCAATACCCTATGTATGCTGATAAATAGTTATTGTTTCATTCTTTTCTCTATATTAGGCTTCTTTTTTATTTCTTCTATTATATTTCATTTCCTATCTTATTTACCTAGTCACATTCTTAAATATTATAAATTTTTAATGCCATTTCATTGATGCAAATATTTAAATATACAATAAACCTTGTTCAGTTCAACATTTATAGATTAATTAAACTGGTTAATAGTGGGATTTAATTTCAACTATTACTGGATATAAATATATATATTTCCATGGCCTCTTTCATTTTATAAATGTAACATCATCTTATTTTATGCTTATGATATGAATAAAAATTATTTAGCGATTTTATTTCAAAATATACCCTCACTATCTACTTATTATGATACATTTTTTTCCTTGATTTTCATTACAGTAACCACATACATATAAAGACGGAGAACATGTTATGTAGTTCATGAATATTATTTTAGAAAAATTAAACCAAGTTTTTTTTTTACCAAATCAATCTCTTGTTTGATATTTTCACTAAGATTCTATTTTAAAAAAGTACTCATGAGCGTGTTTTT ] [-] EMBL CD074910 [ TCAGTTCAACATTTATAGATTAATTAAACTGGTTAATAGTGGGATTTAATTTCAACTATTACTGGATATAAATATATATATTTCCATGGCCTCTTTCATTTTATAAATGTAACATCATCTTATTTTATGCTTATGATATGAATAAAAATTATTTAGCGATTTTATTTCAAAATATACCCTCACTATCTACTTATTATGATACATTTTTTTCCTTGATTTTCATTACAGTAACCACATACATATAAAGACGGAGAACATGTTATGTAGTTCATGAATATTATTTTAGAAAAATTAAACCAAGTTTTTTTTTTACCAAATCAATCTCTTGTTTGATATTTTCACTAAGATTCTATTTTAAAAAAGTACTCATGAGCGTGTTTTTT] consensusID : consensus_6731#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence [ATACATTGTATAAAGTCGTATACACTGGTTTTATACGTGCATATTGACAAATACTAGATATCATTTCTTCGTACATCCATGCAAACATACAAAAATACATTCATATAAATATTATACTTTATTGTTACTAACTTACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTTATACACTAATAGCCCTATGTATGCTGATAAATAGTTATTGTTTCAATCTTTTCTCTATATTAGGCTTCTTTTTTAATTCCTCCAATAAATTCAATTCCTATCTTATTTACCTAGTCACATTCTTAAATATTATAAATTTTTAATTCCATTTCATTGATGCAATATTTTAATATACAATAAACCTTGTTCAGTTCACATTTATAGATTAATTAACCGGGTAATAGAGGGATTTATTTCACACTACCGGGGATAAAATTATATTTCACGGCGCCTTTATTTTATAAAGTACACACCTATTTTATGCTGCTGATGATGAGAAAATTTTTGGCGGCGTTTTTCTAAAAATCCCCCCACTACTTATTATGAAAATTTTTTC] [+] EMBL AI447053 [ATACATTGTATAAAGTCGTATACACTGGTTTTATACGTGCATATTGACAAATACTAGATATCATTTCTTCGTACATCCATGCAAACATACAAAAATACATTCATATAAATATTATACTTTATTGTTACTAACTTACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTTATACACTAATAGCCCTATGTATGCTGATAAATAGTTATTGTTTCAATCTTTTCTCTATATTAGGCTTCTTTTTTAATTCCTCCAATAAATTCAATTCCTATCTTATTTACCTAGTCACATTCTTAAATATTATAAATTTTTAATTCCATTTCATTGATGCAATATTTTAATATACAATAAACCTTGTTCAGTTCACATTTATAGATTAATTAACCGGGTAATAGAGGGATTTATTTCACACTACCGGGGATAAAATTATATTTCACGGCGCCTTTATTTTATAAAGTACACACCTATTTTATGCTGCTGATGATGAGAAAATTTTTGGCGGCGTTTTTCTAAAAATCCCCCCACTACTTATTATGAAAATTTTTTC] [+] EMBL AI559081 [ TCATATAAATATTATACTTTATTGTAACTAACTTACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTTATACACCAATA CCCTATGTATGCTGAAAAATAGTTATTGTTTCATTCTTTTCTCTATAgtg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6731#0 ------------------------------------------------------------ consensus_6731#1 ATACATTGTATAAAGTCGTATACACTGGTTTTATACGTGCATATTGACAAATACTAGATA 60 consensus_6731#0 -------------------------------------CCTCCAGGCCAANAAT------- 16 consensus_6731#1 TCATTTCTTCGTACATCCATGCAAACATACAAAAATACATTCATATAAATATTATACTTT 120 * * ** ** * * consensus_6731#0 -TTGGCACGAGG--ACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTT 73 consensus_6731#1 ATTGTTACTAACTTACTATTCAAAAAATATTAACCCCCCTTCTAGTAGTTATGCAACTTT 180 *** ** * ********************************************** consensus_6731#0 ATACACCAATA-CCCTATGTATGCTGATAAATAGTTATTGTTTCATTCTTTTCTCTATAT 132 consensus_6731#1 ATACACTAATAGCCCTATGTATGCTGATAAATAGTTATTGTTTCAATCTTTTCTCTATAT 240 ****** **** ********************************* ************** consensus_6731#0 TAGGCTTCTTTTTTATTTCTTCTATTATATTTCATTTCCTATCTTATTTACCTAGTCACA 192 consensus_6731#1 TAGGCTTCTTTTTTAATTCCTCCAATAAATT-CAATTCCTATCTTATTTACCTAGTCACA 299 *************** *** ** * ** *** ** ************************* consensus_6731#0 TTCTTAAATATTATAAATTTTTAATGCCATTTCATTGATGCAAATATTTAAATATACAAT 252 consensus_6731#1 TTCTTAAATATTATAAATTTTTAATTCCATTTCATTGATGCAA-TATTTTAATATACAAT 358 ************************* ***************** ***** ********** consensus_6731#0 AAACCTTGTTCAGTTCAACATTTATAGATTAATTAAACTGGTTAATAGTGGGATTTAATT 312 consensus_6731#1 AAACCTTGTTCAGTTCA-CATTTATAGATTAATTAA-CCGGGTAATAGAGGGATTTA-TT 415 ***************** ****************** * ** ****** ******** ** consensus_6731#0 TCAACTATTACTGGATATAAATATATATATTTCCATGGCCTCTTTCATTTTATAAATGTA 372 consensus_6731#1 TCA--CACTACCGGGGATAAAATTATA---TTTCACGGCGCCTTT-ATTTTATAAAGTAC 469 *** * *** ** ***** **** ** ** *** **** ********** consensus_6731#0 ACATCATCTTATTTTATGCTTATGATATGAATAAAAATTATTTAGCGATTTTATTTCAAA 432 consensus_6731#1 ACACC----TATTTTATGCTGCTGA--TGATGAGAAAATTTTTGGCGGCGTT-TTTCTAA 522 *** * *********** *** *** * *** * *** *** ** **** ** consensus_6731#0 ATATACCCTCACTATCTACTTATTATGATACATTTTTTTCCTTGATTTTCATTACAGTAA 492 consensus_6731#1 AAATCCCCCCA----CTACTTATTATGAAA-ATTTTTTC--------------------- 556 * ** *** ** ************* * ******* consensus_6731#0 CCACATACATATAAAGACGGAGAACATGTTATGTAGTTCATGAATATTATTTTAGAAAAA 552 consensus_6731#1 ------------------------------------------------------------ consensus_6731#0 TTAAACCAAGTTTTTTTTTTACCAAATCAATCTCTTGTTTGATATTTTCACTAAGATTCT 612 consensus_6731#1 ------------------------------------------------------------ consensus_6731#0 ATTTTAAAAAAGTACTCATGAGCGTGTTTTTT 644 consensus_6731#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||