These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6740#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1082 fasta sequence [ATTATTTTTATTCAAAAACAATTGAAAATCTGTAAATACAATAATATTCCCGCGAAGCACTTGTCGAAATCGTATCGCTGAACTCTATTTGTCCATCACAATTTTGGCAGACTCAATAAATACATAAGGGAGGTAAAAGTGACACAGTGAATGGCGAATCGGTCAAACTTTTTTAACAATTTGTACAACATCTTCATCGTGAAGTATATGATCTTTACCTACACGCTGTGGTTGATGTTTTACTGACGAACCCCAAACAAAAGCATACTTGAATTCCTTGATTAAAGTCTTGTGTAATTTGTTGCAAAAGTCCTCAACAGTGTGCGAAGCAGATCTCAAAATAACCGGAGCGTTGTAATCAGGCAACTGCCCTTTGGGCTTTGTGTAAATTCTTATCAAGTTTAAGTACTCCCATATTAGCTCAAGTAGATCATCAAAATTCCATTTGTGATGAGCTGAAATGGGCACACAATGAGGAACACGACAAATGATATCTAACTCCTCAATAGTAATCTGATCAATTTTGTTGAGAACATATATACACGGAATATAAACACGACTACCTTCAATCACATCAATTAGATCTTCAGCAGTTGCATCGCATCTGAGTGAGACGTCTGCATTGTGTATTTTATATTCACTTAAAATAGTTTTTATTACTTCTTTATCCAATTCAGATTGAGGGACTAAGGTTTGAATATTCAGACCTCCTTTTTCTTTACGGCGTAATGTAATATTGGGAGGACTTTTGTTTAGTCTAATACCGAATCCCTCTAGTTCGTTTTCTAAAAGCTTTTTGTGTTGTAAAGGCTTAAGGACATCTAGCACCATGAGAATGAGAGTGCAAGTTCGGGCAACAGCTATCACCTGTCTTCCTCTACCCTTTCCATCTTTGGCACCTTCTATAATACCGGGTAGATCAAGTAGTTGAATTTTAGCTCCTTTGTACCTGATAACGCCTGGCACAGTGGTAAGGGTTGTGAACTCATAAGCAGCCACTTCAGAATAGACACCGGCCAAATTGCACAGAAGTGTTGACTTTCCAACTGATGGGAAACCCACAAAGCCAATACGTGCATCTC] [+] EMBL CD075005 [ATTATTTTTATTCAAAAACAATTGAAAATCTGTAAATACAATAATATTCCCGCGAAGCACTTGTCGAAATCGTATCGCTGAACTCTATTTGTCCATCACAATTTTGGCAGACTCAATAAATACATAAGGGAGGTAAAAGTGACACAGTGAATGGCGAATCGGTCAAACTTTTTTAACAATTTGTACAACATCTTCATCGTGAAGTATATGATCTTTACCTACACGCTGTGGTTGATGTTTTACTGACGAACCCCAAACAAAAGCATACTTGAATTCCTTGATTAAAGTCTTGTGTAATTTGTTGCAAAAGTCCTCAACAGTGTGCGAAGCAGATCTCAAAATAACCGGAGCGTTGTAATCAGGCAACTGCCCTTTGGGCTTTGTGTAAATTCTTATCAAGTTTAAGTACTCCCATATTAGCTCAAGTAGATCATCAAAATTCCATTTGTGATGAGCTGAAATGGGCACACAATGAGGAACACGACAAATGATATCTAACTCCTCAATAGTAATCTGATCAATTTTGTTGAGAACATATATACACGGAATATAAACACGACTACCTTCAATCACATCAATTAGATCTTCAGCAGTTGCATCGCATCTGAGTGAGACGTCTGCATTGTGTATTTTATATTCACTTAAAATAGTTTTTATTACTTCTTTATCCAATTCAGATTGAGGGACTAAGGTTTGAATATTCAGACCTCCTTTTTCTTTACGGCGTAATGTAATATTGGGAGGACTTTTGTTTAGTCTAATACCGAATCCCTCTAGTTCGTTTTCTAA ] [-] EMBL CD084193 [ TGTGGTTGATGTTTTACTGACGAACCCCATACAAAAGCATACTTGAATTCCTTGATTAAAGTCTTGTGTAATTTGTTGCAAAAGTCCTCAACAGTGTGCGAAGCAGATCTCAAAATAACCGGAGCGTTGCAATCAGGCAACTGCCCTTTGGGCTTTGTGTAAATTCTTATCAAGTTTAAGTACTCCCATATTAGCTCAAGTAGATCATCAAAATTCCATTTGTGATGAGCTGAAATGGGCACACAATGAGGAACACGACAAATGATATCTAACTCCTCAATAGTAATCTGATCAATTTTGTTGAGAACATATATACACGGAATATAAACACGACTACCTTCAATCACATCAATTAGATCTTCAGCAGTTGCATCGCATCTGAGTGAGACGTCTGCATTGTGTATTTTATATTCACTTAAAATAGTTTTTATTACTTCTTTATCCAATTCAGATTGAGGGACTAAGGTTTGAATATTCAGACCTCCTTTTTCTTTACGGCGTAATGTAATATTGGGAGGACTTTTGTTTAGTCTAATACCGAATCCCct ] [+] EMBL CD190469 [ TTCTTTATCCAATTCAGATTGAGGGACTAAGGTTTGAATATTCAGACCTCCTTTTTCTTTACGGCGTAATGTAATATTGGGAGGACTTTTGTTTAGTCTAATACCGAATCCCTCTAGTTCGTTTTCTAAAAGCTTTTTGTGTTGTAAAGGCTTAAGGACATCTAGCACCATGAGAATGAGAGTGCAAGTTCGGGCAACAGCTATCACCTGTCTTCCTCTACCCTTTCCATCTTTGGCACCTTCTATAATACCGGGTAGATCAAGTAGTTGAATTTTAGCTCCTTTGTACCTGATAACGCCTGGCACAGTGGTAAGGGTTGTGAACTCATAAGCAGCCACTTCAGAATAGACACCGGCCAAATTGCACAGAAGTGTTGACTTTCCAACTGATGGGAAACCCACAAAGCCAATACGTGCATCTC] consensusID : consensus_6740#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [GCCTGATTACACGCTCCGGTTATTTTGAGATCTGCTTCGCACACTGTTGAGGACTTTTGCAACAAATTACACAAGACTTTAATCAAGGAATTCAAGTAGTAAGTTCAGATAACAGTTGAAAGATTTAATGAAATTTTGTATAAATGCTCCGATCACTTCTGGAAAGTTTTATATCAGAACAGTCGTTAAATACTGTTTATTAGATGATAAAGTGAAATAGTTCAATACATTCTTTTTAGTTCAAGTATTTTTTTAATTTTATGAAATCTGCAAACCCCTCGTATGCAACCAATGAATTACAGAATAAGCAAGAGCTTAAAAAGAAGTTAGTAGTATAAATCTCACAGAAAAGGAGTTAGACAAATAGTTCATAATCACTTTTGTCATTATTGATTTCTATGGTTGGTGATAGAACCTAGATATTCTGCGAGTTCATAGACTTCAGAGTATTTTCCCCATTTGAACACTTCCAAAATTCCTGGTCCATAGATCCAGTCCACANAGAACTGTTCCAACGCCATG] [+] EMBL CD129916 [GCCTGATTACACGCTCCGGTTATTTTGAGATCTGCTTCGCACACTGTTGAGGACTTTTGCAACAAATTACACAAGACTTTAATCAAGGAATTCAAGTAGTAAGTTCAGATAACAGTTGAAAGATTTAATGAAATTTTGTATAAATGCTCCGATCACTTCTGGAAAGTTTTATATCAGAACAGTCGTTAAATACTGTTTATTAGATGATAAAGTGAAATAGTTCAATACATTCTTTTTAGTTCAAGTATTTTTTTAATTTTATGAAATCTGCAAACCCCTCGTATGCAACCAATGAATTACAGAATAAGCAAGAGCTTAAAAAGAAGTTAGTAGTATAAATCTCACAGAAAAGGAGTTAGACAAATAGTTCATAATCACTTTTGTCATTATTGATTTCTATGGTTGGTGATAGAACCTAGATATTCTGCGAGTTCATAGACTTCAGAGTATTTTCCCCATTTGAACACTTCCAAAATTCCTGGTCCATAGATCCAGTCCACANAGAACTGTTCCAACGCCATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6740#0 ATTATTTTTATTCAAAAACAATTGAAAATCTGTAAATACAATAATATTCCCGCGAAGCAC 60 consensus_6740#1 ------------------------------------------------------------ consensus_6740#0 TTGTCGAAATCGTATCGCTGAACTCTATTTGTCCATCACAATTTTGGCAGACTCAATAAA 120 consensus_6740#1 ------------------------------------------------------------ consensus_6740#0 TACATAAGGGAGGTAAAAGTGACACAGTGAATGGCGAATCGGTCAAACTTTTTTAACAAT 180 consensus_6740#1 ------------------------------------GCCTGATTACACGCTCCGGTTATT 24 * * * ** * * * consensus_6740#0 TTGTACAACATCTTCATCGTGAAGTAT-ATGATCTTTACCTACACGCTGTGGTTGATGTT 239 consensus_6740#1 TTG----AGATCTGCTTCGCACACTGTTGAGGACTTTTGCAACAAATTACA--CAAGACT 78 *** * **** * *** * * * * **** * *** * * * consensus_6740#0 TTACTGACGAACCCCAAACAAAAGCATACTTGAATTCCTTGATTAAAGTCTTGTGTAATT 299 consensus_6740#1 TTAATCAAGGAATTCAAGT---AGTAAGTTCAGATAACAGTTGAAAGATTTAATGAAATT 135 *** * * * * *** ** * * ** * ** * * ** **** consensus_6740#0 TGTTGCAAAAGTCCTCAACAGTGTGCGAAGCAGATCTCAAAATAACCGGAGCGTTGTAAT 359 consensus_6740#1 TTGTATAAATGCTCCGATCACTTCTGGAA--AGTTTT----ATATCAGAACAGTCGTTA- 188 * * *** * * * ** * *** ** * * *** * * * ** ** * consensus_6740#0 CAGGCAACTGCCCTTTGGGCTTTGTGTAAATTCTTATCAAGTTTAAGTACTCCCATATTA 419 consensus_6740#1 ---AATACTGTTTATTAGAT----GATAAAGTGAAAT--AGTTCAA-TACATTCTTTTTA 238 **** ** * **** * ** **** ** *** * * *** consensus_6740#0 GCTCAAGTAGATCATCAAAATTCC-ATTTGTGATGAGCTGAAATGGGCACACAATGAGGA 478 consensus_6740#1 GTTCAAGTATTTTTTTAATTTTATGAAATCTGCAAACCCCTCGTATGCAACCAATGAATT 298 * ******* * * ** ** * * ** * * * *** ****** consensus_6740#0 ACACGACAAATGATATCTAACTCCTCAAT-AGTAATCTGATCAATTTTGTTGAGAACATA 537 consensus_6740#1 ACAGAATAAGCAAGAGCTTAAAAAGAAGTTAGTAGTATAAATCTCACAGAAAAGGAGTTA 358 *** * ** * * ** * * * **** * * * * ** * ** consensus_6740#0 TATACACGGAATATAAACACGACTACCTTCAATCACATCAAT--TAGATCTTCAGCAGTT 595 consensus_6740#1 GACAAATAGTTCATAATCACTTTTGTCATTATTGATTTCTATGGTTGGTGAT-AGAACCT 417 * * * * **** *** * * * * * * ** ** * * * * ** * * consensus_6740#0 GCATCGCATCTGAGTGAGACGTCTGCATTGTGTATTTTATATTCACTTAAAATAGTTTTT 655 consensus_6740#1 AGATATTCTGCGAGTTCATAGACTTCAGAGTATTTTCCCCATTTG-----AACACTTCCA 472 ** * **** * ** ** ** * ** *** ** * ** consensus_6740#0 ATTACTTCTTTATCCAATTCAGATTGAGGGACTAAGGTTTGAATATTCAGACCTCCTTTT 715 consensus_6740#1 A--AATTCCTGGTCCA---TAGATCCAGTCCACANAG---AACTGTTCCAACGCCATG-- 522 * * *** * **** **** ** * * * * *** ** * * consensus_6740#0 TCTTTACGGCGTAATGTAATATTGGGAGGACTTTTGTTTAGTCTAATACCGAATCCCTCT 775 consensus_6740#1 ------------------------------------------------------------ consensus_6740#0 AGTTCGTTTTCTAAAAGCTTTTTGTGTTGTAAAGGCTTAAGGACATCTAGCACCATGAGA 835 consensus_6740#1 ------------------------------------------------------------ consensus_6740#0 ATGAGAGTGCAAGTTCGGGCAACAGCTATCACCTGTCTTCCTCTACCCTTTCCATCTTTG 895 consensus_6740#1 ------------------------------------------------------------ consensus_6740#0 GCACCTTCTATAATACCGGGTAGATCAAGTAGTTGAATTTTAGCTCCTTTGTACCTGATA 955 consensus_6740#1 ------------------------------------------------------------ consensus_6740#0 ACGCCTGGCACAGTGGTAAGGGTTGTGAACTCATAAGCAGCCACTTCAGAATAGACACCG 1015 consensus_6740#1 ------------------------------------------------------------ consensus_6740#0 GCCAAATTGCACAGAAGTGTTGACTTTCCAACTGATGGGAAACCCACAAAGCCAATACGT 1075 consensus_6740#1 ------------------------------------------------------------ consensus_6740#0 GCATCTC 1082 consensus_6740#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||