These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 877 fasta sequence [CCCCCGAGGCCAANAATTCGGCACGAGGATAATTTAGAACATCAATTAGATCAATTACAGAAATTATCAGATATGTATAGAGATCAAGTTATTCAATTAGAAGAGGAATTAGTTCGTGCACGTGAAGAAGGTGTCATGTCAAAGGATGTATTTAAAGATCAAGCACATAAACTTCATGAACGTGTTCAAGTTATGGCACAGCGTTATCAAAATTTAGAACGTAGACGTCAATTAGAAATGGAAGGTTATCGAACAGATATTAGTGTGTTGCGTAAAAAGTTGAAAGAGGTTGAACGACAACTATTAAAGTTAACTCTTGGTTTAACCGATGGGATCAATTTACCTGAATCACTTAATATTAATGATCATAAAGATATTGATTTGGCGTTATTAAAACAAGTTAAAGCTTCAACAACACGATCTAATCAAATATTGAATGAATTAAAAGGTCTTAAATTAAAAATGTATTCATTAGAAGATGAATTACGTAAAATTTAATAATGCATCCGGTGAAAAGTAAGCCATAATTGGCTAGTAACATTGTCGACACACAATCCATCCATATTTATTATATTTTCTAAATAGACAATTATTATTGTAAATTACGTGATCATTGGTTCCCACTATAATATTTGTGTTAATATAAATTGCTTTTTTAATCGGTATTTGGTCAACACANATTTATAACTCTCCCTTCCCCCACCTTCCCCCCTTCCTNC--CTCTCTCTCTCTCTATCTCTCTCTCTTATTGTTGTCATTACTATTTCCCTGTCANNCNTCCCCANGGTATGCGTATTTCTTTATTTTATCAATTGTGATTTGATTGCATAAATTTATGACTANGGGNNGTTNNCNGGACNGAATNNCATTCAACATTC] [+] EMBL CD081301 [CCCCCGAGGCCAANAATTCGGCACGAGGATAATTTAGAACATCAATTAGATCAATTACAGAAATTATCAGATATGTATAGAGATCAAGTTATTCAATTAGAAGAGGAATTAGTTCGTGCACGTGAAGAAGGTGTCATGTCAAAGGATGTATTTAAAGATCAAGCACATAAACTTCATGAACGTGTTCAAGTTATGGCACAGCGTTATCAAAATTTAGAACGTAGACGTCAATTAGAAATGGAAGGTTATCGAACAGATATTAGTGTGTTGCGTAAAAAGTTGAAAGAGGTTGAACGACAACTATTAAAGTTAACTCTTGGTTTAACCGATGGGATCAATTTACCTGAATCACTTAATATTAATGATCATAAAGATATTGATTTGGCGTTATTAAAACAAGTTAAAGCTTCAACAACACGATCTAATCAAATATTGAATGAATTAAAAGGTCTTAAATTAAAAATGTATTCATTAGAAGATGAATTACGTAAAATTTAATAATGCATCCGGTGAAAAGTAAGCCATAATTGGCTAGTAACATTGTCGACACACAATCCATCCATATTTATTATATTTTCTAAATAGACAATTATTATTGTAAATTACGTGATCATTGGTTCCCACTATAATATTTGTGTTAATATAAATTGCTTTTTTAATCGGTATTTGGTCAACACANATTTATAACTCTCCCTTCCCCCACCTTCCCCCCTTCCTNC CTCTCTCTCTCTCTATCT ] [+] EMBL AA629514 [ TTGTCGACACACAATCCATCCATATTTATTATATTTTCTAAATANACAATTATTATNGTAAATTACGTGATCAANGGTTCCCACTATAATATTTGTGTTAATATAAATTGCTTTTTTAATCGGTATTTGGTCAACACAAATTTATAANTCTCCCTTCCCCCACCTTCCCCCCTTCCTCCCTCTCTCTCTCTCTCTATCTCTCTCTCTTATTGTTGTCATTACTATTTCCCTGTCANNCNTCCCCANGGTATGCGTATTTCTTTATTTTATCAATTGTGATTTGATTGCATAAATTTATGACTANGGGNNGTTNNCNGGACNGAATNNCATTCAACATTC] consensusID : consensus_6747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence [ATTATATTTTTTAAATAGACAATTATTATTGTAAATTACGTGATCATTGGTTCCCACTATAATATTTGTGTTAATATAAATTGCTTTTTTAATCGGTATNTGGTCAACACNNANNNANAANTNTNCCNTTCCNCCCACCTTCCCCCCTTCCTCCCTCTCTCTCTCTCTATCTCTCTCTCTTATTGTTGTCATTACTATTTCCCTGTCATTCTTCCCCATTTATGCGTATTTCTTTATTTTATCAATTGTGATTTGATTGCATAATTTATGACTAAAAATTGTTTACTTTACCGAATTTCATTCAACATTCTTGCTGTCCCATTGACAACAAGTAAATTACTGTTAAGCTTTTATTGTTTTCATTTGTTTGTTTCTTTCTTTTTTATAAAAAAGGCTTTTTGTTTTCATTAGTAACTTTTGTATATTTAACAAGAGAATTGATATGACGAATATATATTAATTGTATGTTGTTAGGTTAATGTCAAATGGGTAAAAAAAAATTAATATAAGTTT] [-] EMBL CD075131 [ATTATATTTTTTAAATAGACAATTATTATTGTAAATTACGTGATCATTGGTTCCCACTATAATATTTGTGTTAATATAAATTGCTTTTTTAATCGGTATNTGGTCAACACNNANNNANAANTNTNCCNTTCCNCCCACCTTCCCCCCTTCCTCCCTCTCTCTCTCTCTATCTCTCTCTCTTATTGTTGTCATTACTATTTCCCTGTCATTCTTCCCCATTTATGCGTATTTCTTTATTTTATCAATTGTGATTTGATTGCATAATTTATGACTAAAAATTGTTTACTTTACCGAATTTCATTCAACATTCTTGCTGTCCCATTGACAACAAGTAAATTACTGTTAAGCTTTTATTGTTTTCATTTGTTTGTTTCTTTCTTTTTTATAAAAAAGGCTTTTTGTTTTCATTAGTAACTTTTGTATATTTAACAAGAGAATTGATATGACGAATATATATTAATTGTATGTTGTTAGGTTAATGTCAAATGGGTAAAAAAAAATTAATATAAGTTT] consensusID : consensus_6747#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [TTAAGTCAAATCAGTGTTAAAAAATTGAATTCTAGTGTTACTCCATCAACGCTATCTACTTTAAAAACTGGTGAACGTGATACTTGTTATTCACCTCGAGACAAAATAAACAATACTCTAAGAACTATTAATACTACTAATATATTTAATAATACTCAAAATTTAGAAACTCATGCATGGATTGAATTTAATCAACAAAAACAAATTCAATTAGAGAAAACAATTGATAATTTAGAACATCAATTAGATCAATTACAGAAATTATCAGATATGTATAGAGATCAAGTTATTCAATTAGAAGAGGAATTAGTTCGTGCACGTGAAGAAGGTGTCATGTCAAAGGATGTATTTAAAGATCAAGCACATAAACTTCAT] [+] EMBL AW017208 [TTAAGTCAAATCAGTGTTAAAAAATTGAATTCTAGTGTTACTCCATCAACGCTATCTACTTTAAAAACTGGTGAACGTGATACTTGTTATTCACCTCGAGACAAAATAAACAATACTCTAAGAACTATTAATACTACTAATATATTTAATAATACTCAAAATTTAGAAACTCATGCATGGATTGAATTTAATCAACAAAAACAAATTCAATTAGAGAAAACAATTGATAATTTAGAACATCAATTAGATCAATTACAGAAATTATCAGATATGTATAGAGATCAAGTTATTCAATTAGAAGAGGAATTAGTTCGTGCACGTGAAGAAGGTGTCATGTCAAAGGATGTATTTAAAGATCAAGCACATAAACTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6747#0 CCCCCGAGGCCAANAATTCGGCACGAGGATAATTTAGAACATCAATTAGATCAATTACAG 60 consensus_6747#1 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 AAATTATCAGATATGTATAGAGATCAAGTTATTCAATTAGAAGAGGAATTAGTTCGTGCA 120 consensus_6747#1 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 CGTGAAGAAGGTGTCATGTCAAAGGATGTATTTAAAGATCAAGCACATAAACTTCATGAA 180 consensus_6747#1 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 CGTGTTCAAGTTATGGCACAGCGTTATCAAAATTTAGAACGTAGACGTCAATTAGAAATG 240 consensus_6747#1 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 GAAGGTTATCGAACAGATATTAGTGTGTTGCGTAAAAAGTTGAAAGAGGTTGAACGACAA 300 consensus_6747#1 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 CTATTAAAGTTAACTCTTGGTTTAACCGATGGGATCAATTTACCTGAATCACTTAATATT 360 consensus_6747#1 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 AATGATCATAAAGATATTGATTTGGCGTTATTAAAACAAGTTAAAGCTTCAACAACACGA 420 consensus_6747#1 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 TCTAATCAAATATTGAATGAATTAAAAGGTCTTAAATTAAAAATGTATTCATTAGAAGAT 480 consensus_6747#1 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 GAATTACGTAAAATTTAATAATGCATCCGGTGAAAAGTAAGCCATAATTGGCTAGTAACA 540 consensus_6747#1 ------------------------------------------------------------ consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 TTGTCGACACACAATCCATCCATATTTATTATATTTTCTAAATAGACAATTATT--ATTG 598 consensus_6747#1 ---------------------------ATTATATTTTTTAAATAGACAATTATT--ATTG 31 consensus_6747#2 ----------------------------TTAAGTCAAATCAGTGTTAAAAAATTGAATTC 32 *** * * * * ** *** *** consensus_6747#0 TAA-ATTACGTGATCATTGGTTCCCACTATAATATTTGTGTTAATATAAA--TTGCTTTT 655 consensus_6747#1 TAA-ATTACGTGATCATTGGTTCCCACTATAATATTTGTGTTAATATAAA--TTGCTTTT 88 consensus_6747#2 TAGTGTTACTCCATCAACGCTATCTACTTTAAAAACTG-GTGAACGTGATACTTGTTATT 91 ** **** **** * * * *** *** * ** ** ** * * *** * ** consensus_6747#0 TTAATCGGTATTTGGTCAACACANATTTATAACTCTCCCTT--CCCCCACCT-TCCCCCC 712 consensus_6747#1 TTAATCGGTATNTGGTCAACACNNANNNANAANTNTNCCNTTCCNCCCACCT-TCCCCCC 147 consensus_6747#2 CACCTCGAGACAAAATAAACAATACTCTAAGAACTATTAATACTACTAATATATTTAATA 151 *** * * **** * * * * * * * consensus_6747#0 TTCCTNCCTCTCTCTCTCTCTATCTCTCTCTCTTATTGTTGTCATTACTATTTCCCTGTC 772 consensus_6747#1 TTCCTCCCTCTCTCTCTCTCTATCTCTCTCTCTTATTGTTGTCATTACTATTTCCCTGTC 207 consensus_6747#2 ATACTCAAAATTTAGAAACTCATGCATGGATTGAATT-TAATCAACAAAAACAA------ 204 * ** * * ** * * *** * *** * * consensus_6747#0 ANNCNTCCCCANGGTATGCGTATTTCTTTATTTTATCAATTGTGATTTGATTGCATAAAT 832 consensus_6747#1 ATTCTTCCCCATT-TATGCGTATTTCTTTATTTTATCAATTGTGATTTGATTGCATAA-T 265 consensus_6747#2 ATTCAATTAGAGAAAACAATTGATAATTTAGAACATCAATT--AGATCAATTACAGAAAT 262 * * * * * * **** ******* * *** ** ** * consensus_6747#0 TTATGACTANGGGNNGT--TNNCNGGACNGAATNNCATTCAACATTC------------- 877 consensus_6747#1 TTATGACTAAAAATTGT--TTACTTTACCGAATTTCATTCAACATTCTTGCTGTCCCATT 323 consensus_6747#2 TATCAGATATGTATAGAGATCAAGTTATTCAATTAGAAGAGGAATTAGTTCGTGCACGTG 322 * ** * * * *** * *** consensus_6747#0 ------------------------------------------------------------ consensus_6747#1 GACAACAAGTAAATTACTGTTAAGCTTTTATTGTTTTCATTTGTTTGTTTCTTTCTTTTT 383 consensus_6747#2 AAGAAGGTGTCATGTCAAAGGATGTATTTAAAGATCAAGCACATAAACTTCAT------- 375 consensus_6747#0 ------------------------------------------------------------ consensus_6747#1 TATAAAAAAGGCTTTTTGTTTTCATTAGTAACTTTTGTATATTTAACAAGAGAATTGATA 443 consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 ------------------------------------------------------------ consensus_6747#1 TGACGAATATATATTAATTGTATGTTGTTAGGTTAATGTCAAATGGGTAAAAAAAAATTA 503 consensus_6747#2 ------------------------------------------------------------ consensus_6747#0 ---------- consensus_6747#1 ATATAAGTTT 513 consensus_6747#2 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||