cluster # 6748

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Schistosoma mansoni
cluster # 6748 cluster # 6748 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6748#0 length = 778 sequences # 3

consensus_6748#1 length = 629 sequences # 1

consensusID : consensus_6748#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 778
fasta sequence

                              [GCCATCAGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTCAGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTCATCCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCGAGTGCGTTTATTGTAACCAGAAAATAAGACCCCGTCTAATCACTTCTCAGGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCC-CCGATAGTCGTCGTAGAAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCAAAGAAACAAATTATACTTCGTTCTTTCTCGGAAGTTGATAATCCTGATTTATAAGTGATCAATAATTAAAATGCACTAGAAAAAATGCAAATTTGATATCATTTTGTATACATGAATAATTTCACATGTATAATCTATACATATTCAGCCAATATAAAATTTTCTGTTCAAAAAAAAAAAAAAAA]

[+] EMBL CD081310             [GCCATCAGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTCAGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTCATCCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCGAGTGCGTTTATTGTAACCAGAAAATAAGACCCCGTCTAATCACTTCTCAGGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCC CCGATAGTCGTCGTAGAAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCANAG AACAAATTATACTTCGTTCTTTCTCGGAAGTTGATCATCCTGATTTATAAGTGATCAATTATT AAATGCACTACGAAAAATGCCAAATTGATATCATTTTGTATCCATGAATAA TTCACATGTATAATCTATACATATTC                                       ]
[-] EMBL CD075142             [                                                                                                    GCAGCGAAACGTGAAAACCTCCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTCATCCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCGAGTGCGTTTATTGTAACCAGAAAATAAGACCCCGTCTAATCACTTCTCAGGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCC CCGATAGTCGTCGTAGAAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCAAAGAAACAAATTATACTTCGTTCTTTCTCGGAAGTTGATAATCCTGATTTATAAGTGATCAATAATTAAAATGCACTAGAAAAAATGCAAATTTGATATCATTTTGTACACATGAATAATTTCACATGTATAATCTATACATATTCAGCCA                                  ]
[-] EMBL AI395404             [                                                                                                                                                                                                                                                                                                                                                                                                 GGCTGGTACCAGCCGCCGATAGTCGTCGTAGAAGACAAAACATTGCTTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCAAAGAAACAAATTATACTTCGTTCTTTCTCGGAAGTTGATAATCCTGATTTATAAGTGATCAATAATTAAAATGCACTAGAAAAAATGCAAATTTGATATCATTTTGTATACATGAATAATTTCACATGTATAATCTATACATATTTAGCCAATATAAAATTTTCTGTTCAAAAAAAAAAAAAAAA]




>consensus_6748#0
GCCATCAGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACA
TCGTTCAGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCT
TCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTAC
GATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACT
TTTCTCATCCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGA
CAGTCGAGTGCGTTTATTGTAACCAGAAAATAAGACCCCGTCTAATCACTTCTCAGGTGC
TTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCCCCGATAGTCGTCGTAGAAGAC
AAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAAT
TTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAAT
CTAAAGAATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCAAAGAAAC
AAATTATACTTCGTTCTTTCTCGGAAGTTGATAATCCTGATTTATAAGTGATCAATAATT
AAAATGCACTAGAAAAAATGCAAATTTGATATCATTTTGTATACATGAATAATTTCACAT
GTATAATCTATACATATTCAGCCAATATAAAATTTTCTGTTCAAAAAAAAAAAAAAAA

consensusID : consensus_6748#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [ATTTTCGGCACGAGGCGGAGATACCGCTAAAGTGCTGTCGAAAATCGTTCTGGCTGCGAAAATTGGCGTAAATAAAATGACAAGTTTTGTCAAGCTAATCTGCTTCCAATTCTCGTCATCAGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTCAGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTCATTCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCGAGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCCCCGATAGTCGTCGTAGAAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATC]

[+] EMBL CD083272             [ATTTTCGGCACGAGGCGGAGATACCGCTAAAGTGCTGTCGAAAATCGTTCTGGCTGCGAAAATTGGCGTAAATAAAATGACAAGTTTTGTCAAGCTAATCTGCTTCCAATTCTCGTCATCAGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTCAGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACCAGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGTTCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTCATTCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCGAGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCCCCGATAGTCGTCGTAGAAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAGAATTCGATTATCGATATC]




>consensus_6748#1
ATTTTCGGCACGAGGCGGAGATACCGCTAAAGTGCTGTCGAAAATCGTTCTGGCTGCGAA
AATTGGCGTAAATAAAATGACAAGTTTTGTCAAGCTAATCTGCTTCCAATTCTCGTCATC
AGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTC
AGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACC
AGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGT
TCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTC
ATTCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCG
AGTGCTTAATCTTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCCCCGATAGTCGTCGTAG
AAGACAAAACATTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAAT
GAAATTTTACATTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAA
TGAATCTAAAGAATTCGATTATCGATATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6748#0      ------------------------------------------------------------
consensus_6748#1      ATTTTCGGCACGAGGCGGAGATACCGCTAAAGTGCTGTCGAAAATCGTTCTGGCTGCGAA 60
                                                                                  

consensus_6748#0      ------------------------------------------------------GCCATC 6
consensus_6748#1      AATTGGCGTAAATAAAATGACAAGTTTTGTCAAGCTAATCTGCTTCCAATTCTCGTCATC 120
                                                                            * ****

consensus_6748#0      AGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTC 66
consensus_6748#1      AGTACAGCTAAGTGTCGCACGTTTCCTCTCTCGACAATGGCCAGTAAGGCTACATCGTTC 180
                      ************************************************************

consensus_6748#0      AGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACC 126
consensus_6748#1      AGTTAGTTCAGCGAGTAACAGCTCTGTCACCCCAGCAGCGAAACGTGAAAACCTTCCACC 240
                      ************************************************************

consensus_6748#0      AGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGT 186
consensus_6748#1      AGCTAATGTAACTGAGAAAGTAAAACAAACGACCAAAGACGTTGGATATTTTACGATAGT 300
                      ************************************************************

consensus_6748#0      TCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTC 246
consensus_6748#1      TCTCGGCGGCTTTGCGCTTACAGGCACCATCTTATATGCAATAATTCAGGAACTTTTCTC 360
                      ************************************************************

consensus_6748#0      ATCCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCG 306
consensus_6748#1      ATTCAAGAGCCCTAATGGTGTTTATGACGATGCCTTCAAAATTTGTAAGACTGACAGTCG 420
                      ** *********************************************************

consensus_6748#0      AGTGCGTTTATTGTAACCAGAAAATAAGACCCCGTCTAATCACTTCTCAGGTGCTTAATC 366
consensus_6748#1      AGTGC-------------------------------------------------TTAATC 431
                      *****                                                 ******

consensus_6748#0      TTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCCCCGATAGTCGTCGTAGAAGACAAAACA 426
consensus_6748#1      TTTTTGGAAGTTCTCTCAAGGCTCGTACCAGCCCCGATAGTCGTCGTAGAAGACAAAACA 491
                      ************************************************************

consensus_6748#0      TTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACA 486
consensus_6748#1      TTGCCTATGACTCATGGTATGATGACAAAGGTCGACTGCATATGGCAATGAAATTTTACA 551
                      ************************************************************

consensus_6748#0      TTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAG 546
consensus_6748#1      TTAAAGGCAATTTGGAATCTGGTGTAGTTTATCTCGAGGTTGTAGAAAATGAATCTAAAG 611
                      ************************************************************

consensus_6748#0      AATTCGATTATCGATATCTAATTGTTGAGACAGAAGGTGGTTTCTCAAAGAAACAAATTA 606
consensus_6748#1      AATTCGATTATCGATATC------------------------------------------ 629
                      ******************                                          

consensus_6748#0      TACTTCGTTCTTTCTCGGAAGTTGATAATCCTGATTTATAAGTGATCAATAATTAAAATG 666
consensus_6748#1      ------------------------------------------------------------
                                                                                  

consensus_6748#0      CACTAGAAAAAATGCAAATTTGATATCATTTTGTATACATGAATAATTTCACATGTATAA 726
consensus_6748#1      ------------------------------------------------------------
                                                                                  

consensus_6748#0      TCTATACATATTCAGCCAATATAAAATTTTCTGTTCAAAAAAAAAAAAAAAA 778
consensus_6748#1      ----------------------------------------------------