These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6751#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 566 fasta sequence [GGTTCGAGGACACTAAAATTGATCTTGATCATGATGAAAAAATTTGTATGACTGAATTAAACAATTATGTTGAAACAAATAATTTAGACGAAAAAATGATTGAAAGCTGGAGAAATTTATTTGATCCAATGCATACTGGCTACATAACACTAACAAAGTTTTGCGATGTACTAGGAGTAAAAATGGAAGACGCTCGAAAGGCTAAGGATGAATTTTAAAAACGACCGGCTAACACACTTGCATCCGATATTTATATTATTGCACACCAAATGAGTATCACTGATCAGATAAAAATAAGTGAACAAGCTAGATGTTTGTTGTTTCCACCTAATGATCTTGATAATAAAGAAATTGCGCATAATTTAAAATTATGGCTACATAAAATTTATGGTCCAATATGGCATGTTGTGGTAGTACGCGGGGATTATGGTGCGTCATTTACTCATTCGGAGAACCGATCATTTCAGTTTCGATTACGAGATAAATGCTTTTTAATATGGTGTACACCTGGTCAATATCAATTGTGTTAAACAATCTTTTCGATTATATTCATAACAATAAAGAAA] [+] EMBL CD081403 [GGTTCGAGGACACTAAAATTGATCTTGATCATGATGAAAAAATTTGTATGACTGAATTAAACAATTATGTTGAAACAAATAATTTAGACGAAAAAATGATTGAAAGCTGGAGAAATTTATTTGATCCAATGCATACTGGCTACATAACACTAACAAAGTTTTGCGATGTACTAGGAGTAAAAATGGAAGACGCTCGAAAGGCTAAGGATGAATTTTAAAAACGACCGGCTAACACACTTGCATCCGATATTTATATTATTGCACACCAAATGAGTATCACTGATCAGATAAAAATAAGTGAACAAGCTAGATGTTTGTTGTTTCCACCTAATGATCTTGATAATAAAGAAATTGCGCATAATTTAAAATTATGGCTACATAAAATTTATGGTCCAATATGGCATGTTGTGGTAGTACGCGGGGATTATGGTGCGTCATTTACTCATTCGGAGAACCGATCATTTCAGTTTCGATTACGAGATAAATGCTTTTTAATATGGTGTACACCTGGTCAATATCAATTGTGTTAAACAATCTTTTCGATTATATTCATAACAATAAAGAA ] [-] EMBL CD075234 [ aACTAAAATTGATCTTGATCATGATGAAAAAATCAGTATGACTGAATTAAAGAATTATGTTGAAACAAATAATTTAGACGAAAAAATGATTGAAAGCTGGAGAAATTTATTTGATCCAATGCATACTGGCTACATAACACTAACAAAGTTTTGCGATGTACTAGGAGTAAAAATGGAAGACGCTCGAAAGGCTAAGGATGAATTTTAAAAACGACCGGCTAACACACTTGCATCCGATATTTATATTATTGCACACCAAATGAGTATCACTGATCAGATAAAAATAAGTGAACAAGCTAGATGTTTGTTGTTTCCACCTAATGATCTTGATAATAAAGAAATTGCGCATAATTTAAAATTATGGCTACATAAAATTTATGGTCCAATATGGCATGTTGTGGTAGTACGCGGGGATTATGGTGCGTCATTTACTCATTCGGAGAACCGATCATTTCAGTTTCGATTACGAGATAAATGCTTTTTAATATGGTGTACACCTGGTCAATATCAATTGTGTTAAACAATCTTTTCGATTATATTCATAACAATAAAGAAA] consensusID : consensus_6751#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 138 fasta sequence [AATTTACTTTAAATCATTGTTCAATTGAATGGATCCATTTTTACATNGCATTTTTTTCCAGAGTTGATCTTNGATCATGATGAAAAAATCAGTATGACTGATAAAAAGAATTATGTTGAAACAAATAATTTAGGCGAA] [+] EMBL SMAA69246 [AATTTACTTTAAATCATTGTTCAATTGAATGGATCCATTTTTACATNGCATTTTTTTCCAGAGTTGATCTTNGATCATGATGAAAAAATCAGTATGACTGATAA ] [+] EMBL SMAA69209 [ ATTTACTTTAAATCATTGTTCAATTGAATGGATCCATTTTTACAT GCATTTTTTGC AGTTGATCTT GATCATGATGAAAAAATCAGTATGACTGAATTAAAGAATTATGTTGAAACAAATAATTTAGGCGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6751#0 GGTTCGAGGACACTAAAATTGATCTTGATCATGATGAAAAAATTTGTATGACTGAATTAA 60 consensus_6751#1 ------------------------------------------------------------ consensus_6751#0 ACAATTATGTTGAAACAAATAATTTAGACGAAAAAATGATTGAAAGCTGGAGAAATTTAT 120 consensus_6751#1 ------------------------------------------------------------ consensus_6751#0 TTGATCCAATGCATACTGGCTACATAACACTAACAAAGTTTTGCGATGTACTAGGAGTAA 180 consensus_6751#1 ------------------------------------------------------------ consensus_6751#0 AAATGGAAGACGCTCGAAAGGCTAAGGATGAATTTTAAAAACGACCGGCTAACACACTTG 240 consensus_6751#1 ------------------------------------------------------------ consensus_6751#0 CATCCGATATTTATATTATTGCACACCAAATGAGTATCACTGATCAGATAAAAATAAGTG 300 consensus_6751#1 -----------------AATTTACTTTAAATCATTGTT--CAATTGAATGGATCCATTTT 41 * * ** **** * * * ** ** * * * consensus_6751#0 AACAAGCTAGATGTTTGTTGTTTCCACCTAATGATCTTGATAATAAAGAAATTGCGCATA 360 consensus_6751#1 TACATNGCATTTTTTTCCAGAGTTGATCTTN-GATCATGATGAAAAAATCAGTATGACTG 100 *** * * *** * * * ** **** **** * *** * * * * consensus_6751#0 ATTTAAA--ATTATGGCTACATAAAATTTATGGTCCAATATGGCATGTTGTGGTAGTACG 418 consensus_6751#1 ATAAAAAGAATTATGTTGAAACAAATAATTTAGGCGAA---------------------- 138 ** *** ****** * * *** * * * * ** consensus_6751#0 CGGGGATTATGGTGCGTCATTTACTCATTCGGAGAACCGATCATTTCAGTTTCGATTACG 478 consensus_6751#1 ------------------------------------------------------------ consensus_6751#0 AGATAAATGCTTTTTAATATGGTGTACACCTGGTCAATATCAATTGTGTTAAACAATCTT 538 consensus_6751#1 ------------------------------------------------------------ consensus_6751#0 TTCGATTATATTCATAACAATAAAGAAA 566 consensus_6751#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||