These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence [AATTCGGCACGAGGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGAGCGGCAGAGTTAGTTCCCCTGTTGTCTTAAGGGACAGTGAAGATATTTCTGAATCCAAACCTAATCTCGGGAAAAGCGGATTGTTAGACGGAAATCCCGGTCCGGTTGTTAAACAGAAAGCCAATTTTGAATTGTCAGGCAAACTTGCGGAGGATACAAATGTTTTTAAAGGTATTGTGATAAAATACAATGAACCAGAAGATGCTAGAAAACCGACCACACATTGGAGGTTGTATGCTTTCAAGGGAAATAAAACATTATCCGTACTGCATATACATAGACAGAGTGGATTTTTAATTGGTCGCGATCGAAAAATTGCAGACATTCCTATGGATCATCCAAGTATTTCGAAACAGCATGCTGTTTTGCAGTATAGACTTGTTCGTGGCCTGATTCGCTTGTATATCATCGATTTGGAGTCAGCGAACGGTACTTATTTGAACAATAACAGAATAGAATCTCGTCGTTACTACGAGCTCCTTGAAAAAGATGTAATCAAGTTTGGGTTCTCGACACGTGAAATATGTTG-TATGACATCAGAAACTGACATGGATGATTCGTCTGGATTTATG-TTTCTGTACAGTTTTTGT-AATATATGTTTA] [+] EMBL CD081450 [AATTCGGCACGAGGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGAGCGGCAGAGTTAGTTCCCCTGTTGTCTTAAGGGACAGTGAAGATATTTCTGAATCCAAACCTAATCTCGGGAAAAGCGGATTGTTAGACGGAAATCCCGGTCCGGTTGTTAAACAGAAAGCCAATTTTGAATTGTCAGGCAAACTTGCGGAGGATACAAATGTTTTTAAAGGTATTGTGATAAAATACAATGAACCAGAAGATGCTAGAAAACCGACCACACATTGGAGGTTGTATGCTTTCAAGGGAAATAAAACATTATCCGTACTGCATATACATAGACAGAGTGGATTTTTAATTGGTCGCGATCGAAAAATTGCAGACATTCCTATGGATCATCCAAGTATTTCGAAACAGCATGCTGTTTTGCAGTATAGACTTGTTCGTGGCCTGATTCGCTTGTATATCATCGATTTGGAGTCAGCGAACGGTACTTATTTGAACAATAACAGAATAGAATCTCGTCGTTACTACGAGCTCCTTGAAAAAGATGTAATCAAGTTTGGGTTCTCGACACGTGAAATATGTTG TATGACATCAGAAACTGACATGGATGATTCGTCTGGATTTATG TTTCTGTACAGTTTTTGT AATATATGTTT ] [-] EMBL CD075273 [ AATCTCGGGAAAAGCGGATTGTTAGACGGAAATCCCGGTCCGGTTGTTAAACAGAAAGCCAATTTTGAATTGTCAGGCAAACTTGCGGAGGATACAAATGTTTTTAAAGGTATTGTGATAAAATACAATGAACCAGAAGATGCTAGAAAACCGACCACACATTGGAGGTTGTATGCTTTCAAGGGAAATAAAACATTATCCGTACTGCATATACATAGACAGAGTGGATTTTTAATTGGTCGCGATCGAAAAATTGCAGACATTCCTATGGATCATCCAAGTATTTCGAAACAGCATGCTGTTTTGCAGTATAGACTTGTTCGTGGCCTGATTCGCTTGTATATCATCGATTTGGAGTCAGCGAACGGTACTTATTTGAACAATAACAGAATAGAATCTCGTCGTTACTACGAGCTCCTTGAAAAAGATGTAATCAAGTTTGGTTTCTCGACACGTG AATATGTTGTTATGACATCAGAAACTGACATGGATGATTCGTCTTGA TTATGTTTTCTGTACAGTTTTTGTAAATATATGTTTA] consensusID : consensus_6752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 224 fasta sequence [ACCAAACACAAACATAAACACAAAATAAAAGATACTGTTCAAAAAGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGACCGGCAG] [-] EMBL CD152742 [ACCAAACACAAACATAAACACAAAATAAAAGATACTGTTCAAAAAGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGACCGGCAG] [-] EMBL CD152620 [cCCAAACACAAACATAAACACAAAATAAAAGATACTGTTCAAAAAGAAGATGAAGAGTTTACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCATGCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAATGATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGAGCGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6752#0 --------------------------------AATTCGGCACGAGGAAGATGAAGAGTTT 28 consensus_6752#1 ACCAAACACAAACATAAACACAAAATAAAAGATACTGTTCAAAAAGAAGATGAAGAGTTT 60 * * ** * *************** consensus_6752#0 ACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCAT 88 consensus_6752#1 ACGCGCCCGCAAAAACTTCCACGACAGCATAGCAATAAACGGCCTCATCAACTTACCCAT 120 ************************************************************ consensus_6752#0 GCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAAT 148 consensus_6752#1 GCTAAAATCAAGTTAGAGCCTCGAGAATCCTGCAGCCCGCCTCATAAACGAAGACTAAAT 180 ************************************************************ consensus_6752#0 GATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGAGCGGCAGAGTTAGTTCCCCTGTT 208 consensus_6752#1 GATCCTGTAATACTGAAAGCTAGGTCTCCCCGAAGGACCGGCAG---------------- 224 ************************************* ****** consensus_6752#0 GTCTTAAGGGACAGTGAAGATATTTCTGAATCCAAACCTAATCTCGGGAAAAGCGGATTG 268 consensus_6752#1 ------------------------------------------------------------ consensus_6752#0 TTAGACGGAAATCCCGGTCCGGTTGTTAAACAGAAAGCCAATTTTGAATTGTCAGGCAAA 328 consensus_6752#1 ------------------------------------------------------------ consensus_6752#0 CTTGCGGAGGATACAAATGTTTTTAAAGGTATTGTGATAAAATACAATGAACCAGAAGAT 388 consensus_6752#1 ------------------------------------------------------------ consensus_6752#0 GCTAGAAAACCGACCACACATTGGAGGTTGTATGCTTTCAAGGGAAATAAAACATTATCC 448 consensus_6752#1 ------------------------------------------------------------ consensus_6752#0 GTACTGCATATACATAGACAGAGTGGATTTTTAATTGGTCGCGATCGAAAAATTGCAGAC 508 consensus_6752#1 ------------------------------------------------------------ consensus_6752#0 ATTCCTATGGATCATCCAAGTATTTCGAAACAGCATGCTGTTTTGCAGTATAGACTTGTT 568 consensus_6752#1 ------------------------------------------------------------ consensus_6752#0 CGTGGCCTGATTCGCTTGTATATCATCGATTTGGAGTCAGCGAACGGTACTTATTTGAAC 628 consensus_6752#1 ------------------------------------------------------------ consensus_6752#0 AATAACAGAATAGAATCTCGTCGTTACTACGAGCTCCTTGAAAAAGATGTAATCAAGTTT 688 consensus_6752#1 ------------------------------------------------------------ consensus_6752#0 GGGTTCTCGACACGTGAAATATGTTGTATGACATCAGAAACTGACATGGATGATTCGTCT 748 consensus_6752#1 ------------------------------------------------------------ consensus_6752#0 GGATTTATGTTTCTGTACAGTTTTTGTAATATATGTTTA 787 consensus_6752#1 --------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||