These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 768 fasta sequence [GAATTCGGCACGAGGATTTTTTTGCGAGTTTTTTGTTGTTGCTCAATTTCAGGTGGGCGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGCTACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCAGTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGTATCTGACACTGGCCATCCAATTTTTAATATAATTAAACAAAATGATTTAGGGTCTTTAAATTGTTTATTATCAGCCAATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCATCGGATCGAGGATTCAGTGATCTAGTTTCTACTTTAATCAGATATAATGCAAATATAAATGCCAAAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAGTTATACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATTTTACTTATGATCTATATGATGGTGACTTTCATACATTATTTAACGATTACTTACATAGATCAACGTCCTAGTCTTTAGCTTGTGTGTGTATGTCTTTGTTACCTTTTTGTTGATTTCATGATCACTTGATTTCAAT-AATTTCATATTCTGATCATNCACTTCACATGCTCACCAATATTGTATTGCTTACC-ATGCATATGAAAT-AACTATGTAANTATTNTAAATATACCT] [+] EMBL CD081473 [GAATTCGGCACGAGGATTTTTTTGCGAGTTTTTTGTTGTTGCTCAATTTCAGGTGGGCGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGCTACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCAGTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGTATCTGACACTGGCCATCCAATTTTTAATATAATTAAACAAAATGATTTAGGGTCTTTAAATTGTTTATTATCAGCCAATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCATCGGATCGAGGATTCAGTGATCTAGTTTCTACTTTAATCAGATATAATGCAAATATAAATGCCAAAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAGTTATACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATTTTACTTATGATCTATATGATGGTGACTTTCATACATTATTTAACGATTACTTACATAGATCAACGTCCTAGTCTTTAGCTTGTGTGTGTATGTCTTTGTTACCTTTTTGTTGATTTCATGATCACTTGATTTCAAT AATTTCATATTCTGATCATNCACTTCACATGCTCACCAATATTGTATTGCTTACC ATGCATATGAAAT AACTATGTAANTATTNTAAATATAC ] [+] EMBL AA629513 [ AAAAGCAGTATATTGACAAGCTACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTNTATGTCAGTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGTATCTGACACTGGCCATCCAATTTTTAATATAATTAAACAAAATGATTTAGGGTCTTTAAATTGTTTATTATCAGCCAATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCATCGGATCGAGGATTCAGTGATCTAGTTTCTACCTTAATCAGATATAATGCAAATATAAATGCCGAAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAGTTATACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATTTTACTTAT ] [-] EMBL CD075297 [ TCTNTAAATTG TTATTATCAGCCAATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCATCGGATCGAGGATTCAGTGATCTAGTTTCTACTTTAATCAGATATAATGCAAATATAAATGCCAAAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAGTTATACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATTTTACTTATGATCTATATGATGGTGACTTTCATACATTATTTAACGATTACTTACATAGATCAACGTCCTAGTCTTTAGCTTGTGTGTGTATGTCTTTGTTACCTTTTTGTTGATTTCATGATCACTTGATTTCAATAAATTTCATATTCTGATCATCCACTTCACATGCTCACCAATATTGTATTGCTTACCAATGCATATGAAATAAACTATGTAAATATTTTAAATATAACT] consensusID : consensus_6753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [ATGCAATGTATCAAAACCAGGAATTTTCGATGTCAGTGGTCGAAAAAAATGGTGGGCGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGCTACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCAGTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGT] [-] EMBL CD147385 [ATGCAATGTATCAAAACCAGGAATTTTCGATGTCAGTGGTCGAAAAAAATGGTGGGCGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGCTACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCAGTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6753#0 ---GAATTCGGCACGAGGATTTTTTTGCGAGTTTTTTGTTGTTGCTCAATTTCAGGTGGG 57 consensus_6753#1 ATGCAATGTATCAAAACCAGGAATTTTCGA--TGTCAGTGGTCGAAAAAAAT--GGTGGG 56 *** ** * * *** *** * * ** ** * ** * ****** consensus_6753#0 CGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGC 117 consensus_6753#1 CGTGGCATGATCTTGGGAATATGCCTGTCGATGAGGCACAAAAGCAGTATATTGACAAGC 116 ************************************************************ consensus_6753#0 TACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCA 177 consensus_6753#1 TACAAGAACTGAATCCTGCATGGAAACCATCGAATGAGAAACAAAGATCTGTATATGTCA 176 ************************************************************ consensus_6753#0 GTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGTATCTGACACTGGCC 237 consensus_6753#1 GTCGAATGATCAATTTGGACCCAAATTCAAATGAATCACCACTTGT-------------- 222 ********************************************** consensus_6753#0 ATCCAATTTTTAATATAATTAAACAAAATGATTTAGGGTCTTTAAATTGTTTATTATCAG 297 consensus_6753#1 ------------------------------------------------------------ consensus_6753#0 CCAATAGTAACGAAGTTCATTCAACGGATGAAAATGGAATGACTCCGCTTCATTGGGCAT 357 consensus_6753#1 ------------------------------------------------------------ consensus_6753#0 CGGATCGAGGATTCAGTGATCTAGTTTCTACTTTAATCAGATATAATGCAAATATAAATG 417 consensus_6753#1 ------------------------------------------------------------ consensus_6753#0 CCAAAGATGCTGAAGGACAAACACCTCTTCATTATGCTTGTTCTTGTGGTCATGATGAAG 477 consensus_6753#1 ------------------------------------------------------------ consensus_6753#0 TTATACAAGTCTTACTAAAATCTAATGCTGATATCTATGCTAAAGACAATGAAGGAAATT 537 consensus_6753#1 ------------------------------------------------------------ consensus_6753#0 TTACTTATGATCTATATGATGGTGACTTTCATACATTATTTAACGATTACTTACATAGAT 597 consensus_6753#1 ------------------------------------------------------------ consensus_6753#0 CAACGTCCTAGTCTTTAGCTTGTGTGTGTATGTCTTTGTTACCTTTTTGTTGATTTCATG 657 consensus_6753#1 ------------------------------------------------------------ consensus_6753#0 ATCACTTGATTTCAATAATTTCATATTCTGATCATNCACTTCACATGCTCACCAATATTG 717 consensus_6753#1 ------------------------------------------------------------ consensus_6753#0 TATTGCTTACCATGCATATGAAATAACTATGTAANTATTNTAAATATACCT 768 consensus_6753#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||