These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 623 fasta sequence [TAATTCGGCACCAGGCGGCACGAGGCAGATCCATGGGGATCTTATGAATAATAATGCCGCTGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCA-TTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACTTCAATTATTT] [+] EMBL CD081501 [TAATTCGGCACCAGGCGGCACGAGGCAGATCCATGGGGATCTTATGAATAATAATGCCGCTGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCA TTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACT ] [+] EMBL CD080153 [ gacATCCATGGGGATCTTATGAATAATAATGCCGCTGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCA TTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACTTCAATTATTT] [-] EMBL CD075326 [ TCATTTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGCCAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACTT ] consensusID : consensus_6757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CTCGNGGCCAAAAATTCGGCACGAGGTGAATAATAATGCCGCTGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCATTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACT] [+] EMBL CD080297 [CTCGNGGCCAAAAATTCGGCACGAGGTGAATAATAATGCCGCTGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGATGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTACTGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGATCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCTTACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATCATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATCAAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCATTCTAGTGTGACTGATAAGCCAATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGCTAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTTAATCATTATTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6757#0 TAATTCGGCACCAGGCGGCACGAGGCAGATCCATGGGGATCTTATGAATAATAATGCCGC 60 consensus_6757#1 ------------------CTCGNGGCCAAAAATTCGGCACGAGGTGAATAATAATGCCGC 42 * ** *** * * ** * **************** consensus_6757#0 TGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGA 120 consensus_6757#1 TGATGATGATGGTGATGATGATTGGAATTTGGATATGAATGATGTTTTTGAAGATATAGA 102 ************************************************************ consensus_6757#0 TGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTAC 180 consensus_6757#1 TGACAATAAATCAACATTAAATCATAACTCAGAAAATAAGAATTTATTATCAGAGTCTAC 162 ************************************************************ consensus_6757#0 TGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGA 240 consensus_6757#1 TGCTACTACTCTTCCCCCACTTACGCCTTCGTCGTATTGGGATTGTCAACCACAATATGA 222 ************************************************************ consensus_6757#0 TCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCT 300 consensus_6757#1 TCAAGAAACAAAGAATAAACTTGACTTAGACTGGAATTCAAATGAATTTTTTGATAGTCT 282 ************************************************************ consensus_6757#0 TACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATC 360 consensus_6757#1 TACTCTAAATGAGAATCCAATTGAAAAGAGAACAAATACGAAGAAGTCAACTGTTAAATC 342 ************************************************************ consensus_6757#0 ATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATC 420 consensus_6757#1 ATCACAATCTTCAAATATAATAAAAAGTCTACCGTCGACAAATCATTCAGACTATCAATC 402 ************************************************************ consensus_6757#0 AAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCATTCTAGTGTGACTGATAAGCC 480 consensus_6757#1 AAAAAAGCTATCACCTGAACATGTTTCAACTCGAACTCATTCTAGTGTGACTGATAAGCC 462 ************************************************************ consensus_6757#0 AATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGC 540 consensus_6757#1 AATGAAATCATCGAAAGGACAACAAAGAGAATTAAATAAATCAAACGTTGTCAATAATGC 522 ************************************************************ consensus_6757#0 TAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTT 600 consensus_6757#1 TAGTAATGATGATGGTGATGATTGGGGCGATTGGTAGTGTCTACTCTTCATCGTATGGTT 582 ************************************************************ consensus_6757#0 AATCATTATTACTTCAATTATTT 623 consensus_6757#1 AATCATTATTACT---------- 595 ************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||