These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 793 fasta sequence [CGGAGCCATTAATTCGGCACGAGGCGTTTATCTACTGCACATGCTAAGGCACGTATGTCTAAAACAGTCACTAAGAAAGACGCTGAAGCTGCTGTCCAACTAATATCATTTGTCTTGTTCAAAGAAGTTCTAGAGAAAACTAAACGAAAGCGTGATCGCAACCTGGATAATGATGATGATGATGATAAAGACTCTGATGAAGGCGAGAATGCAGATGACACCAAACGCGATCACTCACAACAACCTGCTAAACGAAGACCTGTTGCTACAGGAAATCATTCCGCTCCAGATCCAAATGATCCTTATGCATTTACAGAAGATCCAACTGTAACTAGAACTGAACCACTTGCGGAAACTGTCCCTATTTCTTCTGCTTTACACCAAGAACGAACATCTCAACTTTCAACAATGATTAGTCGAATTTTTCAAGAACGTCATATTGAACAATTAACAGTGACTGAGATAACTAATGTTGTTAGATCACGAGGTGGGGGATTTAGCCAATCTGATGTTCGTATCACTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTCAGATAAAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATATTTGTGTTATTTCCTAAACATCGTTTG-CTCATTTTCATTATTCGTACAGATTTCTTATATTAAATACGTTCCCATTATTACTATTACACTCATTGTCATTATTTTTGTATTGGAAATCTATAAATACATGTTC] [+] EMBL CD081592 [CGGAGCCATTAATTCGGCACGAGGCGTTTATCTACTGCACATGCTAAGGCACGTATGTCTAAAACAGTCACTAAGAAAGACGCTGAAGCTGCTGTCCAACTAATATCATTTGTCTTGTTCAAAGAAGTTCTAGAGAAAACTAAACGAAAGCGTGATCGCAACCTGGATAATGATGATGATGATGATAAAGACTCTGATGAAGGCGAGAATGCAGATGACACCAAACGCGATCACTCACAACAACCTGCTAAACGAAGACCTGTTGCTACAGGAAATCATTCCGCTCCAGATCCAAATGATCCTTATGCATTTACAGAAGATCCAACTGTAACTAGAACTGAACCACTTGCGGAAACTGTCCCTATTTCTTCTGCTTTACACCAAGAACGAACATCTCAACTTTCAACAATGATTAGTCGAATTTTTCAAGAACGTCATATTGAACAATTAACAGTGACTGAGATAACTAATGTTGTTAGATCACGAGGTGGGGGATTTAGCCAATCTGATGTTCGTATCACTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTCAGATAAAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATATTTGTGTTATTTCCTAAACATCGTTTG CTCATTTTCATTATTCGTACAGATTTCTTATATTAAATACGTTCCCATTATTACTATTACACTCATTGTCATTATTTTTGTATTGGAAATCTATAAATACATGTTC] [+] EMBL AI559068 [ GGGATTTAGCCAANCTGATGTTCGTATCACTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTCAGATAAAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATATTTGTGTTATTTCCTAAACATCGTTTG CTCATTTTCATTATTCGTACAGATTTCTTATATTAAATACGTTCCCATTATTACTATTACACTCATTGTCATTATTTTTGTATTGGAAATCTATAAATACAT ] [+] EMBL AI739688 [ GGGATTTAGCCAATCTGATGTTCGTATCACTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCDACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTCAGAT AAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATATTTGTGTTATTTCCTAAACATCGTTTGCCTCATTTTCATTA TCGTACAGATTTCTTATA TAAATACGGTCCCATTATAACTATTACACTCA TGGCTATAATTTTGTA TGG AATCTA AAATACA ] consensusID : consensus_6761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [TGCGGAAACTGTCCCTATTTTTTTTGCTTTACCCCAAGAACGAACATTTCAACTTTCAACAATGATTAGTCGAATTTTTCAAGAACGTCATATTGAACAATTAACAGTGGCTGAGATAACTAATGTTGTTAGATCCCCAGGTGGGGGATTTAGCCAATTTGATGTTTGGATCCCTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACCAAGTTTGGCTTAAAAAGTCCTTTTTTGGGTTCAGAAAAAACCATATTTGTCACTAGCATTTTTACACACACACCCTTTTCAGATAAAGAAAAATTGTGGTATTTCCTAAACATCGGTTGGTCATTTTCATTATTTGGACAGATTTTTTATATTAAAAACGTTCCCCTTATTAATATTACACTCAATGGCATTATTTTTGTATTGGAAATCTATAAAAACATGTTT] [-] EMBL CD075416 [TGCGGAAACTGTCCCTATTTTTTTTGCTTTACCCCAAGAACGAACATTTCAACTTTCAACAATGATTAGTCGAATTTTTCAAGAACGTCATATTGAACAATTAACAGTGGCTGAGATAACTAATGTTGTTAGATCCCCAGGTGGGGGATTTAGCCAATTTGATGTTTGGATCCCTTTAGAATCCATGCATAGGGATAATCGTATTATGCTTGCCGGCGACCAAGTTTGGCTTAAAAAGTCCTTTTTTGGGTTCAGAAAAAACCATATTTGTCACTAGCATTTTTACACACACACCCTTTTCAGATAAAGAAAAATTGTGGTATTTCCTAAACATCGGTTGGTCATTTTCATTATTTGGACAGATTTTTTATATTAAAAACGTTCCCCTTATTAATATTACACTCAATGGCATTATTTTTGTATTGGAAATCTATAAAAACATGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6761#0 CGGAGCCATTAATTCGGCACGAGGCGTTTATCTACTGCACATGCTAAGGCACGTATGTCT 60 consensus_6761#1 ------------------------------------------------------------ consensus_6761#0 AAAACAGTCACTAAGAAAGACGCTGAAGCTGCTGTCCAACTAATATCATTTGTCTTGTTC 120 consensus_6761#1 ------------------------------------------------------------ consensus_6761#0 AAAGAAGTTCTAGAGAAAACTAAACGAAAGCGTGATCGCAACCTGGATAATGATGATGAT 180 consensus_6761#1 ------------------------------------------------------------ consensus_6761#0 GATGATAAAGACTCTGATGAAGGCGAGAATGCAGATGACACCAAACGCGATCACTCACAA 240 consensus_6761#1 ------------------------------------------------------------ consensus_6761#0 CAACCTGCTAAACGAAGACCTGTTGCTACAGGAAATCATTCCGCTCCAGATCCAAATGAT 300 consensus_6761#1 ------------------------------------------------------------ consensus_6761#0 CCTTATGCATTTACAGAAGATCCAACTGTAACTAGAACTGAACCACTTGCGGAAACTGTC 360 consensus_6761#1 -----------------------------------------------TGCGGAAACTGTC 13 ************* consensus_6761#0 CCTATTTCTTCTGCTTTACACCAAGAACGAACATCTCAACTTTCAACAATGATTAGTCGA 420 consensus_6761#1 CCTATTTTTTTTGCTTTACCCCAAGAACGAACATTTCAACTTTCAACAATGATTAGTCGA 73 ******* ** ******** ************** ************************* consensus_6761#0 ATTTTTCAAGAACGTCATATTGAACAATTAACAGTGACTGAGATAACTAATGTTGTTAGA 480 consensus_6761#1 ATTTTTCAAGAACGTCATATTGAACAATTAACAGTGGCTGAGATAACTAATGTTGTTAGA 133 ************************************ *********************** consensus_6761#0 TCACGAGGTGGGGGATTTAGCCAATCTGATGTTCGTATCACTTTAGAATCCATGCATAGG 540 consensus_6761#1 TCCCCAGGTGGGGGATTTAGCCAATTTGATGTTTGGATCCCTTTAGAATCCATGCATAGG 193 ** * ******************** ******* * *** ******************** consensus_6761#0 GATAATCGTATTATGCTTGCCGGCGACGATGTTTGGCTTATATAGTCCTTTTTTGGCTTC 600 consensus_6761#1 GATAATCGTATTATGCTTGCCGGCGACCAAGTTTGGCTTAAAAAGTCCTTTTTTGGGTTC 253 *************************** * ********** * ************* *** consensus_6761#0 AGATAAAACCATATTTGTCACTAGCATTTTCACACACACACACTCTTCAGATAATGAATA 660 consensus_6761#1 AGAAAAAACCATATTTGTCACTAGCATTTTTACACACACACCCTTTTCAGATAAAGAAAA 313 *** ************************** ********** ** ********* *** * consensus_6761#0 TTTGTGTTATTTCCTAAACATCGTTTGCTCATTTTCATTATTCGTACAGATTTCTTATAT 720 consensus_6761#1 ATTGTGGTATTTCCTAAACATCGGTTGGTCATTTTCATTATTTGGACAGATTTTTTATAT 373 ***** **************** *** ************** * ******** ****** consensus_6761#0 TAAATACGTTCCCATTATTACTATTACACTCATTGTCATTATTTTTGTATTGGAAATCTA 780 consensus_6761#1 TAAAAACGTTCCCCTTATTAATATTACACTCAATGGCATTATTTTTGTATTGGAAATCTA 433 **** ******** ****** *********** ** ************************ consensus_6761#0 TAAATACATGTTC 793 consensus_6761#1 TAAAAACATGTTT 446 **** ******* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||