These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1106 fasta sequence [TCAAGATGAAAATGGCAAATCTTTCCATATCACCAGGGGAATCGAACATTAAAAACGACAGTTCTGTTCAGGAATTAACTGGGTTTTGTGTAGCAAGTGAAGCAGAAACTTTTATGGATCCTAATCAGTTTCAAATTCATAGAATCCTGAACCGAGCTCTCCCAATGAGTTCTGAACTTGTTGGTTTGTACATACCGTCACCTAGCGAAGATGACGATAATGGAGATGGTTGTGGTATGGTTGAGAAAGCATTTGGTTCTGAACACCGGTTACGAATGACAGATCAATCATTTCATTTTTCTCAAGTTTGTCATGAAAACGCAACTCCAGTCGCTCCTCAGATTGGATGTACTGCTGGTTTGTCAAGCAGAAAGAAAATAAAGCCTTTAAAAGGTCACAGACGTAACAAAAGAGATGTTAAAAGTACTCGATACCGATGTGGAAGACATAAAAATACTTCAACCGATGAACACAACTTGGATCAGTCATCGAGATTGCGTGCTCAATGCATAAAGAATTTTGAAAAACACAGTGTTTTAGACATCAACACTGATCTTGACTTCCTTCATGGTCGGCCTTTAACATGTGCCTAACAGCCTATGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTGTCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGATCCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGAAATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGTTACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCANATTAACGATGGACTAATATTTTGTTCACCTATTGNATTGTATGTTCGCATGGTCTGTAAATTCCCCCCCCACTGTATACTATTTGTCACTTGATGATATGTAGACTAATGCCATCACAGTACTGATTNTAGCAAGTATCATGGACCGANNTATCATCATATCNANTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNATGGTGACACCTGAAATGAATCTG] [+] EMBL CD129953 [TCAAGATGAAAATGGCAAATCTTTCCATATCACCAGGGGAATCGAACATTAAAAACGACAGTTCTGTTCAGGAATTAACTGGGTTTTGTGTAGCAAGTGAAGCAGAAACTTTTATGGATCCTAATCAGTTTCAAATTCATAGAATCCTGAACCGAGCTCTCCCAATGAGTTCTGAACTTGTTGGTTTGTACATACCGTCACCTAGCGAAGATGACGATAATGGAGATGGTTGTGGTATGGTTGAGAAAGCATTTGGTTCTGAACACCGGTTACGAATGACAGATCAATCATTTCATTTTTCTCAAGTTTGTCATGAAAACGCAACTCCAGTCGCTCCTCAGATTGGATGTACTGCTGGTTTGTCAAGCAGAAAGAAAATAAAGCCTTTAAAAGGTCACAGACGTAACAAAAGAGATGTTAAAAGTACTCGATACCGATGTGGAAGACATAAAAATACTTCAACCGATGAACACAACTTGGATCAGTCATCGAGATTGCGTGCTCAATGCATAAAGAATTTTGAAAAACACAGTGTTTTAGACATCAACACTGATCTTGACTTCCTTCATGGTCGGCCTTT ] [+] EMBL CD081852 [ gaggGCGAAGATGACGATAATGGAGATGGTTGTGGTATGGTTGAGAAAGCATTTGGTTCTGAACACCGGTTACGAATGACAGATCAATCATTTCATTTTTCTCAAGTTTGTCATGAAAACGCAACTCCAGTCGCTCCTCAGATTGGATGTACTGCTGGTTTGTCAAGCAGAAAGAAAATAAAGCCTTTAAAAGGTCACAGACGTAACAAAAGAGATGTTAAAAGTACTCGATACCGATGTGGAAGACATAAAAATACTTCAACCGATGAACACAACTTGGATCAGTCATCGAGATTGCGTGCTCAATGCATAAAGAATTTTGAAAAACACAGTGTTTTAGACATCAACACTGATCTTGACTTCCTTCATGGTCGGCCTTTAACATGTGCCTAACAGCCTATGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTGTCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGATCCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGAAATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGTTACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCANATTAACGATGGACTAATATTTTGTTCACCTATTGNATTGTATGTTCGCATGGTCTGTAAATTCCCCCCCCACTGTATACTATTTGTCACTTGATGATATGTAGACTAATGCCATCACAGTACTGATTNTAGCAAGTATCATGGACCGANNTATCATCATATCNANTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNATGGTGACACCTGAAATGAATCTG] consensusID : consensus_6776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence [CNTAACAGCNTATGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTGTCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGATCCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGAAATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGTTACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCAAATTAACGATGGACTAATATTTTGTTCAACCTATTGATTGTATGTTTCGCATGTTCTGTAAATTCCCCCCCCCACTGTAATAACTATTTGTTCACTTGATGATTATGTAGACTAATTGCACATCACAAGTAACTGAATTTTAGCAAAGTTATTCATTGGACCGTAATTTATCATTCATTAATTCATATATATATATATATATATATATATATATATATATATATATATATATATAATATATGGTTGTACAGCCTTGAAAATGAAATCGCTGAAAAAATTTGTTTCACTAAATACATTTTTTATGAC] [-] EMBL CD075567 [CNTAACAGCNTATGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTGTCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGATCCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGAAATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGTTACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCAAATTAACGATGGACTAATATTTTGTTCAACCTATTGATTGTATGTTTCGCATGTTCTGTAAATTCCCCCCCCCACTGTAATAACTATTTGTTCACTTGATGATTATGTAGACTAATTGCACATCACAAGTAACTGAATTTTAGCAAAGTTATTCATTGGACCGTAATTTATCATTCATTAATTCATATATATATATATATATATATATATATATATATATATATATATATATATAATATATGGTTGTACAGCCTTGAAAATGAAATCGCTGAAAAAAT ] [-] EMBL CD077163 [ ATTAACGATGAACTAATATTTTGTTCAACCTATTGATTGTATGTTTCGCATGTTCTGTAAATTCCCCCCCCCACTGTAATAACTATTTGTTCACTTGATGATTATGTAGACTATTTGCACATCACAAGTAACTGAATTTTAGCAAAGTTATTCATTGGACCGTAATTTATCATTCATTAATTC ATATATATATATATATATATATATATATATATATATATATATATATAATATATGGTTGTACAGCCTTGAAAATGAAATCGCTGAAAAAAATTGTTTCACTAAATACATTTTTTATGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6776#0 TCAAGATGAAAATGGCAAATCTTTCCATATCACCAGGGGAATCGAACATTAAAAACGACA 60 consensus_6776#1 ------------------------------------------------------------ consensus_6776#0 GTTCTGTTCAGGAATTAACTGGGTTTTGTGTAGCAAGTGAAGCAGAAACTTTTATGGATC 120 consensus_6776#1 ------------------------------------------------------------ consensus_6776#0 CTAATCAGTTTCAAATTCATAGAATCCTGAACCGAGCTCTCCCAATGAGTTCTGAACTTG 180 consensus_6776#1 ------------------------------------------------------------ consensus_6776#0 TTGGTTTGTACATACCGTCACCTAGCGAAGATGACGATAATGGAGATGGTTGTGGTATGG 240 consensus_6776#1 ------------------------------------------------------------ consensus_6776#0 TTGAGAAAGCATTTGGTTCTGAACACCGGTTACGAATGACAGATCAATCATTTCATTTTT 300 consensus_6776#1 ------------------------------------------------------------ consensus_6776#0 CTCAAGTTTGTCATGAAAACGCAACTCCAGTCGCTCCTCAGATTGGATGTACTGCTGGTT 360 consensus_6776#1 ------------------------------------------------------------ consensus_6776#0 TGTCAAGCAGAAAGAAAATAAAGCCTTTAAAAGGTCACAGACGTAACAAAAGAGATGTTA 420 consensus_6776#1 ------------------------------------------------------------ consensus_6776#0 AAAGTACTCGATACCGATGTGGAAGACATAAAAATACTTCAACCGATGAACACAACTTGG 480 consensus_6776#1 ------------------------------------------------------------ consensus_6776#0 ATCAGTCATCGAGATTGCGTGCTCAATGCATAAAGAATTTTGAAAAACACAGTGTTTTAG 540 consensus_6776#1 ------------------------------------------------------------ consensus_6776#0 ACATCAACACTGATCTTGACTTCCTTCATGGTCGGCCTTTAACATGTGCCTAACAGCCTA 600 consensus_6776#1 ------------------------------------------------CNTAACAGCNTA 12 * ******* ** consensus_6776#0 TGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTG 660 consensus_6776#1 TGTATTCGTTCAACAAACGTTTCAGAGTCCAACTCAACTGTGATCAAATCTTTTATCTTG 72 ************************************************************ consensus_6776#0 TCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGAT 720 consensus_6776#1 TCAAATTCACTCATTCCTCCCCTGAACCAATGAATCCTGCACAAGTTACAAAATGTAGAT 132 ************************************************************ consensus_6776#0 CCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGA 780 consensus_6776#1 CCGGAGGTAAATCAGAACCTACTCAAATGAATTTCTTATGGTGCAAGATTTATGTTTCGA 192 ************************************************************ consensus_6776#0 AATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGT 840 consensus_6776#1 AATTTTCCCCTCCCGAATTTTAAAAAAATGACCACATCTCATTATTATTACAAAGGTCGT 252 ************************************************************ consensus_6776#0 TACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCANATTAACGATGGACTAATA 900 consensus_6776#1 TACTACTCAGATCTCAAGATTACCGTTCACACATTATTTCAAATTAACGATGGACTAATA 312 ***************************************** ****************** consensus_6776#0 TTTTGTTCACCTATTGNATTGTATGTT-CGCATGGTCTGTAAATTCCCCCCCC-ACTGTA 958 consensus_6776#1 TTTTGTTCAACCTATTGATTGTATGTTTCGCATGTTCTGTAAATTCCCCCCCCCACTGTA 372 ********* * * ********** ****** ****************** ****** consensus_6776#0 T--ACTATTTGT-CACTTGATGAT-ATGTAGACTAAT-GC-CATCACAGT--ACTGA-TT 1009 consensus_6776#1 ATAACTATTTGTTCACTTGATGATTATGTAGACTAATTGCACATCACAAGTAACTGAATT 432 ********* *********** ************ ** ******* ***** ** consensus_6776#0 NTAGCAAG--TATCA--TGGACCG--ANNTATCATCATATCNANTNNNNNNNNNNNNNNN 1063 consensus_6776#1 TTAGCAAAGTTATTCATTGGACCGTAATTTATCATT-CATTAATTCATATATATATATAT 491 ****** *** ******* * ****** ** * * consensus_6776#0 NNNNNNNNNNNNNNNNANN-ATGGTGACACCTGAAATGAATCTG---------------- 1106 consensus_6776#1 ATATATATATATATATATATATATATATATATATATAATATATGGTTGTACAGCCTTGAA 551 * ** * * * * ** ** consensus_6776#0 ------------------------------------------------ consensus_6776#1 AATGAAATCGCTGAAAAAATTTGTTTCACTAAATACATTTTTTATGAC 599 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||