These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence [GAGGGCCANAATTCGGCACGAGGTCGCACGGGAGATTTAAAACGATTGTCTTGTCATTTGTATGGTAATATAATCGTGTAATGAGATATTTCAATCAAGAGAAGAAGATCCAACTGACCCTCGATTGCGGACAGAAGGAATTCGGCAGCACTAGATGCCATCAATGCCATATGGTTTACACAGTCGGTGATAAAGAGGATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTCCAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTTCACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATATCAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCANATTCCGACCTTTCTTGTGTAGACATTAACGGACNNCATTNGTGGGGATTCGCGGATATGGGNTAGACATAAACATCGTCGGAAGGGGATAGCCACAATTTATTAGATGCTGTGCTACAAACTTAATTTATGGGTTACACTCTCTCGTACACAACAGCTTTTTNCGAACCACTGCAATGGCGCAGATTTTGCTNGATCTACACAGCCGAAAGATTCTATATACTGGATTATACTTTATATGGAACTGACACTNAGGTATTATAGTTCTAATTATANAGAATA] [+] EMBL CD081960 [GAGGGCCANAATTCGGCACGAGGTCGCACGGGAGATTTAAAACGATTGTCTTGTCATTTGTATGGTAATATAATCGTGTAATGAGATATTTCAATCAAGAGAAGAAGATCCAACTGACCCTCGATTGCGGACAGAAGGAATTCGGCAGCACTAGATGCCATCAATGCCATATGGTTTACACAGTCGGTGATAAAGAGGATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTCCAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTTCACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATATCAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCANATTCCGACCTTTCTTGTGTAGACATTAACGGACNNCATTNGTGGGGATTCGCGGATATGGGNTAGACATAAACATCGTCGGAAGGGGATAGCCACAATTTATTAGATGCTGTGCTACAAACTTAATTTATGGGTTACACTCTCTCGTACACAACAGCTTTTTNCGAACCACTGCAATGGCGCAGATTTTGCTNGATCTACACAGCCGAAAGATTCTATATACTGGATTATACTTTATATGGAACTGACACTNAGGTATTATAGTTCTAATTATANAGAATA] [-] EMBL CD135108 [ ATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTCCAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTTCACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATATCAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGC ] consensusID : consensus_6782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence [GCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTTCTTGTGTAGACATTAACGGACCAATTTGTGGGATTCGGCGGATATGGGTAGAACATAAACATCGTCGGAAGGGAATAGCCCCAAATTTATTAGATGCTGTGCTACAAAACTTAATTTATGGTTTACCACTCTCTCGTACACAAACAGCTTTTTCCGAACCAACTGCAAATGGCGCAGATTTTGCTGTATCTTACACAGGCCGAGAAGATTTCTTAATATACTGATTTTATACTTTTATAATGAAAACTGAACACTTACAGTTATTTATAGTTCTAAATTTATAGAGTAAATTATAT] [-] EMBL CD075640 [GCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTTCTTGTGTAGACATTAACGGACCAATTTGTGGGATTCGGCGGATATGGGTAGAACATAAACATCGTCGGAAGGGAATAGCCCCAAATTTATTAGATGCTGTGCTACAAAACTTAATTTATGGTTTACCACTCTCTCGTACACAAACAGCTTTTTCCGAACCAACTGCAAATGGCGCAGATTTTGCTGTATCTTACACAGGCCGAGAAGATTTCTTAATATACTGATTTTATACTTTTATAATGAAAACTGAACACTTACAGTTATTTATAGTTCTAAATTTATAGAGTAAATTATAT] [+] EMBL CD145387 [ GGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTTCTTGTGTAGACATTAACGGACCAATTTGTGGGATTCGGCGGATATGGGTAGAACATAAACATCGTCGGAAGGGAATAGCCACAAATTTATTAGATGCTGTGCTACAAAACTTAATTTATGGTTTACCACTCTCTCGTACACAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6782#0 GAGGGCCANAATTCGGCACGAGGTCGCACGGGAGATTTAAAACGATTGTCTTGTCATTTG 60 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 TATGGTAATATAATCGTGTAATGAGATATTTCAATCAAGAGAAGAAGATCCAACTGACCC 120 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 TCGATTGCGGACAGAAGGAATTCGGCAGCACTAGATGCCATCAATGCCATATGGTTTACA 180 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 CAGTCGGTGATAAAGAGGATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTC 240 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 CAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTT 300 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 CACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATAT 360 consensus_6782#1 ------------------------------------------------------------ consensus_6782#0 CAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATT 420 consensus_6782#1 ------------GCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATT 48 ************************************************ consensus_6782#0 ATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATC 480 consensus_6782#1 ATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATC 108 ************************************************************ consensus_6782#0 GAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAG 540 consensus_6782#1 GAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAG 168 ************************************************************ consensus_6782#0 CAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGA-TA 599 consensus_6782#1 CAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATA 228 ********************************************************* ** consensus_6782#0 TCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCANATTCCGACCTTT 659 consensus_6782#1 TCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTT 288 *********************************************** ************ consensus_6782#0 CTTGTGTAGACATTAACGGACNNCATTNGTGGGGATTCGCGGATATGGGNTAGACATAAA 719 consensus_6782#1 CTTGTGTAGACATTAACGGACCA-ATTTGTGGGATTCGGCGGATATGGGTAGAACATAAA 347 ********************* *** ***** * *********** ******* consensus_6782#0 CATCGTCGGAAGGGGATAGCCACAA-TTTATTAGATGCTGTGCTACAAA-CTTAATTTAT 777 consensus_6782#1 CATCGTCGGAAGGGAATAGCCCCAAATTTATTAGATGCTGTGCTACAAAACTTAATTTAT 407 ************** ****** *** *********************** ********** consensus_6782#0 GGGTTAC-ACTCTCTCGTACACAA-CAGCTTTTTNCGAACCA-CTGCAA-TGGCGCAGAT 833 consensus_6782#1 GGTTTACCACTCTCTCGTACACAAACAGCTTTTTCCGAACCAACTGCAAATGGCGCAGAT 467 ** **** **************** ********* ******* ****** ********** consensus_6782#0 TTTGCTNGATCT-ACACAG-CCGA-AAGATTCT---ATATACTGGATT-ATACTTT-ATA 885 consensus_6782#1 TTTGCTGTATCTTACACAGGCCGAGAAGATTTCTTAATATACTGATTTTATACTTTTATA 527 ****** **** ****** **** ****** ******** ** ******* *** consensus_6782#0 TGGAA--CTGA-CACTNA--GGTATT-ATAGTTCTAATTATANAGAATA-------- 928 consensus_6782#1 ATGAAAACTGAACACTTACAGTTATTTATAGTTCTAAATTTATAGAGTAAATTATAT 584 *** **** **** * * **** ********** * ** *** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||