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Schistosoma mansoni
cluster # 6782 cluster # 6782       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6782#0 length = 928 sequences # 2  
consensus_6782#1 length = 584 sequences # 2  

consensusID : consensus_6782#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 928
fasta sequence
                              [GAGGGCCANAATTCGGCACGAGGTCGCACGGGAGATTTAAAACGATTGTCTTGTCATTTGTATGGTAATATAATCGTGTAATGAGATATTTCAATCAAGAGAAGAAGATCCAACTGACCCTCGATTGCGGACAGAAGGAATTCGGCAGCACTAGATGCCATCAATGCCATATGGTTTACACAGTCGGTGATAAAGAGGATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTCCAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTTCACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATATCAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCANATTCCGACCTTTCTTGTGTAGACATTAACGGACNNCATTNGTGGGGATTCGCGGATATGGGNTAGACATAAACATCGTCGGAAGGGGATAGCCACAATTTATTAGATGCTGTGCTACAAACTTAATTTATGGGTTACACTCTCTCGTACACAACAGCTTTTTNCGAACCACTGCAATGGCGCAGATTTTGCTNGATCTACACAGCCGAAAGATTCTATATACTGGATTATACTTTATATGGAACTGACACTNAGGTATTATAGTTCTAATTATANAGAATA]

[+] EMBL CD081960             [GAGGGCCANAATTCGGCACGAGGTCGCACGGGAGATTTAAAACGATTGTCTTGTCATTTGTATGGTAATATAATCGTGTAATGAGATATTTCAATCAAGAGAAGAAGATCCAACTGACCCTCGATTGCGGACAGAAGGAATTCGGCAGCACTAGATGCCATCAATGCCATATGGTTTACACAGTCGGTGATAAAGAGGATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTCCAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTTCACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATATCAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCANATTCCGACCTTTCTTGTGTAGACATTAACGGACNNCATTNGTGGGGATTCGCGGATATGGGNTAGACATAAACATCGTCGGAAGGGGATAGCCACAATTTATTAGATGCTGTGCTACAAACTTAATTTATGGGTTACACTCTCTCGTACACAACAGCTTTTTNCGAACCACTGCAATGGCGCAGATTTTGCTNGATCTACACAGCCGAAAGATTCTATATACTGGATTATACTTTATATGGAACTGACACTNAGGTATTATAGTTCTAATTATANAGAATA]
[-] EMBL CD135108             [                                                                                                                                                                                                      ATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTCCAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTTCACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATATCAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_6782#0 GAGGGCCANAATTCGGCACGAGGTCGCACGGGAGATTTAAAACGATTGTCTTGTCATTTG TATGGTAATATAATCGTGTAATGAGATATTTCAATCAAGAGAAGAAGATCCAACTGACCC TCGATTGCGGACAGAAGGAATTCGGCAGCACTAGATGCCATCAATGCCATATGGTTTACA CAGTCGGTGATAAAGAGGATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTC CAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTT CACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATAT CAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATT ATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATC GAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAG CAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGATAT CCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCANATTCCGACCTTTC TTGTGTAGACATTAACGGACNNCATTNGTGGGGATTCGCGGATATGGGNTAGACATAAAC ATCGTCGGAAGGGGATAGCCACAATTTATTAGATGCTGTGCTACAAACTTAATTTATGGG TTACACTCTCTCGTACACAACAGCTTTTTNCGAACCACTGCAATGGCGCAGATTTTGCTN GATCTACACAGCCGAAAGATTCTATATACTGGATTATACTTTATATGGAACTGACACTNA GGTATTATAGTTCTAATTATANAGAATA



consensusID : consensus_6782#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 584
fasta sequence
                              [GCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTTCTTGTGTAGACATTAACGGACCAATTTGTGGGATTCGGCGGATATGGGTAGAACATAAACATCGTCGGAAGGGAATAGCCCCAAATTTATTAGATGCTGTGCTACAAAACTTAATTTATGGTTTACCACTCTCTCGTACACAAACAGCTTTTTCCGAACCAACTGCAAATGGCGCAGATTTTGCTGTATCTTACACAGGCCGAGAAGATTTCTTAATATACTGATTTTATACTTTTATAATGAAAACTGAACACTTACAGTTATTTATAGTTCTAAATTTATAGAGTAAATTATAT]

[-] EMBL CD075640             [GCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTTCTTGTGTAGACATTAACGGACCAATTTGTGGGATTCGGCGGATATGGGTAGAACATAAACATCGTCGGAAGGGAATAGCCCCAAATTTATTAGATGCTGTGCTACAAAACTTAATTTATGGTTTACCACTCTCTCGTACACAAACAGCTTTTTCCGAACCAACTGCAAATGGCGCAGATTTTGCTGTATCTTACACAGGCCGAGAAGATTTCTTAATATACTGATTTTATACTTTTATAATGAAAACTGAACACTTACAGTTATTTATAGTTCTAAATTTATAGAGTAAATTATAT]
[+] EMBL CD145387             [                                                                                                                                              GGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATATCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTTCTTGTGTAGACATTAACGGACCAATTTGTGGGATTCGGCGGATATGGGTAGAACATAAACATCGTCGGAAGGGAATAGCCACAAATTTATTAGATGCTGTGCTACAAAACTTAATTTATGGTTTACCACTCTCTCGTACACAAA                                                                                                                                                        ]


>consensus_6782#1 GCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATTATGTTAAGTTGT CTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATCGAACACAATTAG TCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAGCAAACAGTTGCA AACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATATCCAGAGTGTCG ACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTTCTTGTGTAGACA TTAACGGACCAATTTGTGGGATTCGGCGGATATGGGTAGAACATAAACATCGTCGGAAGG GAATAGCCCCAAATTTATTAGATGCTGTGCTACAAAACTTAATTTATGGTTTACCACTCT CTCGTACACAAACAGCTTTTTCCGAACCAACTGCAAATGGCGCAGATTTTGCTGTATCTT ACACAGGCCGAGAAGATTTCTTAATATACTGATTTTATACTTTTATAATGAAAACTGAAC ACTTACAGTTATTTATAGTTCTAAATTTATAGAGTAAATTATAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6782#0      GAGGGCCANAATTCGGCACGAGGTCGCACGGGAGATTTAAAACGATTGTCTTGTCATTTG 60
consensus_6782#1      ------------------------------------------------------------
                                                                                  

consensus_6782#0      TATGGTAATATAATCGTGTAATGAGATATTTCAATCAAGAGAAGAAGATCCAACTGACCC 120
consensus_6782#1      ------------------------------------------------------------
                                                                                  

consensus_6782#0      TCGATTGCGGACAGAAGGAATTCGGCAGCACTAGATGCCATCAATGCCATATGGTTTACA 180
consensus_6782#1      ------------------------------------------------------------
                                                                                  

consensus_6782#0      CAGTCGGTGATAAAGAGGATATCAAAGCTCACAAAGAGTACCATCAAATAAAATTATTTC 240
consensus_6782#1      ------------------------------------------------------------
                                                                                  

consensus_6782#0      CAACAGTCCGGCTACCAAGAGGACGCCATGAAAATATCATCATGGAAAATTTCGATGGTT 300
consensus_6782#1      ------------------------------------------------------------
                                                                                  

consensus_6782#0      CACGAGTGACGGAACTGCTAACTAATCTTCGATTAGGACAATCATTTTATGAACGAATAT 360
consensus_6782#1      ------------------------------------------------------------
                                                                                  

consensus_6782#0      CAACGCTAATGAGCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATT 420
consensus_6782#1      ------------GCCTTGACCTTGGTTACGATGTACCATCAGAAGAGAGTAACCTCCATT 48
                                  ************************************************

consensus_6782#0      ATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATC 480
consensus_6782#1      ATGTTAAGTTGTCTAATACCTTACATCCTGACTGGCGTGTTTTCGTGTACGTAAAGGATC 108
                      ************************************************************

consensus_6782#0      GAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAG 540
consensus_6782#1      GAACACAATTAGTCGTGGGCTGTTGCATTGTTGAGGAACTAACTACAAAGAAGATATCAG 168
                      ************************************************************

consensus_6782#0      CAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGA-TA 599
consensus_6782#1      CAAACAGTTGCAAACTGAACAGACTGGTTAGTGGACGGAAAAGTCTTTTATCTTGGAATA 228
                      ********************************************************* **

consensus_6782#0      TCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCANATTCCGACCTTT 659
consensus_6782#1      TCCAGAGTGTCGACCGGAATGACGATCGATGTGATTTAATTTCCTCAAATTCCGACCTTT 288
                      *********************************************** ************

consensus_6782#0      CTTGTGTAGACATTAACGGACNNCATTNGTGGGGATTCGCGGATATGGGNTAGACATAAA 719
consensus_6782#1      CTTGTGTAGACATTAACGGACCA-ATTTGTGGGATTCGGCGGATATGGGTAGAACATAAA 347
                      *********************   *** *****  *  ***********    *******

consensus_6782#0      CATCGTCGGAAGGGGATAGCCACAA-TTTATTAGATGCTGTGCTACAAA-CTTAATTTAT 777
consensus_6782#1      CATCGTCGGAAGGGAATAGCCCCAAATTTATTAGATGCTGTGCTACAAAACTTAATTTAT 407
                      ************** ****** *** *********************** **********

consensus_6782#0      GGGTTAC-ACTCTCTCGTACACAA-CAGCTTTTTNCGAACCA-CTGCAA-TGGCGCAGAT 833
consensus_6782#1      GGTTTACCACTCTCTCGTACACAAACAGCTTTTTCCGAACCAACTGCAAATGGCGCAGAT 467
                      ** **** **************** ********* ******* ****** **********

consensus_6782#0      TTTGCTNGATCT-ACACAG-CCGA-AAGATTCT---ATATACTGGATT-ATACTTT-ATA 885
consensus_6782#1      TTTGCTGTATCTTACACAGGCCGAGAAGATTTCTTAATATACTGATTTTATACTTTTATA 527
                      ******  **** ****** **** ******     ********  ** ******* ***

consensus_6782#0      TGGAA--CTGA-CACTNA--GGTATT-ATAGTTCTAATTATANAGAATA-------- 928
consensus_6782#1      ATGAAAACTGAACACTTACAGTTATTTATAGTTCTAAATTTATAGAGTAAATTATAT 584
                        ***  **** **** *  * **** ********** * ** *** **        




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)