These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6790#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 874 fasta sequence [TTGGCTCGAGGAACANAATCATTTTTGGGACCTCCTCAAACAGCGTTTGCAGATAGTCTCGATATGGCTCGTTCTAATCCAGGCTTACATCTTATTTTGTTACTAAACACTTTTAAAAGAAATAATTCACACGCAGTTGACTGTCCTTTACCTTTAAGGTTTCATATACCATCATATCCATCTGTAGTAATAACTGACTATGCACTTGTACCTCAATGGGGTGGTCTAATTTCTATTGATGCTTCTGATTGCATGACAAGAACTGGATCAACCAAGATAATTGCACAAAAAATTATTTATGTGATACGTTCAATATTAGGTTTTCCACAAATCAAAGAAATGTATTTTGATCGGGATATAGATAATACTCACACCTATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAATTGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAACGAACTATTGAGTCATTAATAAACCTTCTACAACGCCTTCCAAACATGATTATACGAGATGATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTCANAAGACCTGATGAAACANACGATTCAGCATCGTCACATAACGAGATTATGNTGCTCCTNCGGTGTACATTNCAGTATGCATATAATGGCTTAATTNCTTCAATGGAGCGTTTTTCGATCACGTCTGCTTGGTCTTTATATTTCGAGATGATCAGAATATGGTATTATACGCCGCTTTCGTACCATCGGCTTCGCTATTCTGTCACGTTCGACATTTACTAGATTCGTACACACTATAGAATATCTTATTTATTTATAAATNGNCGACCGTNGATAA] [+] EMBL CD082171 [TTGGCTCGAGGAACANAATCATTTTTGGGACCTCCTCAAACAGCGTTTGCAGATAGTCTCGATATGGCTCGTTCTAATCCAGGCTTACATCTTATTTTGTTACTAAACACTTTTAAAAGAAATAATTCACACGCAGTTGACTGTCCTTTACCTTTAAGGTTTCATATACCATCATATCCATCTGTAGTAATAACTGACTATGCACTTGTACCTCAATGGGGTGGTCTAATTTCTATTGATGCTTCTGATTGCATGACAAGAACTGGATCAACCAAGATAATTGCACAAAAAATTATTTATGTGATACGTTCAATATTAGGTTTTCCACAAATCAAAGAAATGTATTTTGATCGGGATATAGATAATACTCACACCTATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAATTGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAACGAACTATTGAGTCATTAATAAACCTTCTACAACGCCTTCCAAACATGATTATACGAGATGATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTCANAAGACCTGATGAAACANACGATTCAGCATCGTCACATAACGAGATTATGNTGCTCCTNCGGTGTACATTNCAGTATGCATATAATGGCTTAATTNCTTCAATGGAGCGTTTTTCGATCACGTCTGCTTGGTCTTTATATTTCGAGATGATCAGAATATGGTATTATACGCCGCTTTCGTACCATCGGCTTCGCTATTCTGTCACGTTCGACATTTACTAGATTCGTACACACTATAGAATATCTTATTTATTTATAAATNGNCGACCGTNGATAA] consensusID : consensus_6790#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [TATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAATTGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAACGAACTATTGAGTCATTAATAAACCTTNTACAACGCCTTCCAAACATGATTATACGAGATGATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTCAAAAGACCTGATGAAACAAACGATTCAGCATCGTCACATAACGAGATTATGTGCTCCCTCGGTGTTACATTCCAGTATGCATATAATGCTTTAATTTCTTCAAATGGAGCGTTTTTCGATCACAGTCTGCTTGGTCTTTTATATTTCGAGGATGATCAGAAATATGGTATTTATACGCCGCTTTTCGTACCAATCGGCTTCGCCTTATTCCTGTCAACGTATCGAACATTTAAACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTTATTTTAATTTTATAATATTTGTTCGTACCGGTAGAAATAAAGTATG] [-] EMBL CD075787 [TATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAATTGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAACGAACTATTGAGTCATTAATAAACCTTNTACAACGCCTTCCAAACATGATTATACGAGATGATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTCAAAAGACCTGATGAAACAAACGATTCAGCATCGTCACATAACGAGATTATGTGCTCCCTCGGTGTTACATTCCAGTATGCATATAATGCTTTAATTTCTTCAAATGGAGCGTTTTTCGATCACAGTCTGCTTGGTCTTTTATATTTCGAGGATGATCAGAAATATGGTATTTATACGCCGCTTTTCGTACCAATCGGCTTCGCCTTATTCCTGTCAACGTATCGAACATTTAAACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTTATTTTAATTTTATAATATTTGTTCGTACCGGTAGAAATAAAGTATG] consensusID : consensus_6790#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence [TTTTTTTTTTTTTTTTAGTAATATACATACTTTATTTCTACCGGTACGAACAAATATTATAAAATTAAAATAAAGATATTTCCTATTAGTTGTTGTTACGGAATACTAGTTTAAATGTTCGATACGTTGACAGGAATAAGGCGAAGCCGATTGGTACGAAAAGCGGCGTATAAATACCATATTTCTGATCATCCTACAAAAAAAATAAATCGTGTAATTATTAAGCGAACAGGTAAGTTAGTGCAAACAAAAGTCTATCTTCAAAAACTAGTTCTTTATGTGATAATCAAAATGAAAGTACTCTATGAACTCTACTTTAACGTTTACGCAACGCTCAGTAGATCTGAATGTGATTTTTGTTCTGCCGTACGGTTGACGACGTCCAAGATTCTCAATCAAATGTTGAATCGTAAGGAATGGCTACATAACCAAATTGCACTGATCCCCAAATGCCCTGGTACGGTCGAAAGTGGGGGGGGGGGGCTTGGCTCTTTCCTTCCTGAGATGCCTTCATATGACCATGCCTACTT] [+] EMBL AI394757 [TTTTTTTTTTTTTTTTAGTAATATACATACTTTATTTCTACCGGTACGAACAAATATTATAAAATTAAAATAAAGATATTTCCTATTAGTTGTTGTTACGGAATACTAGTTTAAATGTTCGATACGTTGACAGGAATAAGGCGAAGCCGATTGGTACGAAAAGCGGCGTATAAATACCATATTTCTGATCATCCTACAAAAAAAATAAATCGTGTAATTATTAAGCGAACAGGTAAGTTAGTGCAAACAAAAGTCTATCTTCAAAAACTAGTTCTTTATGTGATAATCAAAATGAAAGTACTCTATGAACTCTACTTTAACGTTTACGCAACGCTCAGTAGATCTGAATGTGATTTTTGTTCTGCCGTACGGTTGACGACGTCCAAGATTCTCAATCAAATGTTGAATCGTAAGGAATGGCTACATAACCAAATTGCACTGATCCCCAAATGCCCTGGTACGGTCGAAAGTGGGGGGGGGGGGCTTGGCTCTTTCCTTCCTGAGATGCCTTCATATGACCATGCCTACTT] consensusID : consensus_6790#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [ACGAGCATTCATGTTCGANTNGGTCGTTAGCGNTTGATAATCTCAANAGACCTGATGAAACAAACGATTCAGCATCGNCACATAACGAGATTATGTGTCTCCCTCGGNGTTACATTCCAGTATGCATATAATGCTTNANTNTCTCCAAATGGAGCGTTTCCCGANCACAGNCTGCTTGGTCTTTTTATATTTCGAGGATGANCAGAAATATGGTATTTATACGCCCGCTNTTCGTACCAATCGGTTTCGNCTTATTCCNGTCAACNTNTCGCAACATTTAACACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTNATCTTAATCTCATTNTATTTGNCCGNCCCCCGCAGAANT] [+] EMBL SM304 [ACGAGCATTCATGTTCGANTNGGTCGTTAGCGNTTGATAATCTCAANAGACCTGATGAAACAAACGATTCAGCATCGNCACATAACGAGATTATGTGTCTCCCTCGGNGTTACATTCCAGTATGCATATAATGCTTNANTNTCTCCAAATGGAGCGTTTCCCGANCACAGNCTGCTTGGTCTTTTTATATTTCGAGGATGANCAGAAATATGGTATTTATACGCCCGCTNTTCGTACCAATCGGTTTCGNCTTATTCCNGTCAACNTNTCGCAACATTTAACACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTNATCTTAATCTCATTNTATTTGNCCGNCCCCCGCAGAANT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6790#0 TTGGCTCGAGGAACANAATCATTTTTGGGACCTCCTCAAACAGCGTTTGCAGATAGTCTC 60 consensus_6790#1 ------------------------------------------------------------ consensus_6790#3 ------------------------------------------------------------ consensus_6790#2 ------------------------------------------------------------ consensus_6790#0 GATATGGCTCGTTCTAATCCAGGCTTACATCTTATTTTGTTACTAAACACTTTTAAAAGA 120 consensus_6790#1 ------------------------------------------------------------ consensus_6790#3 ------------------------------------------------------------ consensus_6790#2 ------------------------------------------------------------ consensus_6790#0 AATAATTCACACGCAGTTGACTGTCCTTTACCTTTAAGGTTTCATATACCATCATATCCA 180 consensus_6790#1 ------------------------------------------------------------ consensus_6790#3 ------------------------------------------------------------ consensus_6790#2 ------------------------------------------------------------ consensus_6790#0 TCTGTAGTAATAACTGACTATGCACTTGTACCTCAATGGGGTGGTCTAATTTCTATTGAT 240 consensus_6790#1 ------------------------------------------------------------ consensus_6790#3 ------------------------------------------------------------ consensus_6790#2 ------------------------------------------------------------ consensus_6790#0 GCTTCTGATTGCATGACAAGAACTGGATCAACCAAGATAATTGCACAAAAAATTATTTAT 300 consensus_6790#1 ------------------------------------------------------------ consensus_6790#3 ------------------------------------------------------------ consensus_6790#2 ------------------------------------------------------------ consensus_6790#0 GTGATACGTTCAATATTAGGTTTTCCACAAATCAAAGAAATGTATTTTGATCGGGATATA 360 consensus_6790#1 ------------------------------------------------------------ consensus_6790#3 ------------------------------------------------------------ consensus_6790#2 ------------------------------------------------------------ consensus_6790#0 GATAATACTCACACCTATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAAT 420 consensus_6790#1 ---------------TATCATATTCAATCTAACATGGACTTAAATGGTCAAACAACGAAT 45 consensus_6790#3 ------------------------------------------------------------ consensus_6790#2 ---------TTTTTTTTTTTTTTTTAGTAATATACATACTTTATTTCTACCGGTACGAAC 51 consensus_6790#0 TGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAA--- 477 consensus_6790#1 TGGGAGCTTAATTTGTGGTTTCTTCGACGGACTATTGAATGTCTTACTGAGACAAAA--- 102 consensus_6790#3 ------------------------------------------------------------ consensus_6790#2 AAATATTATAAAATTAAAATAAAGATATTTCCTATTAGTTGTTGTTACGGAATACTAGTT 111 consensus_6790#0 CGAACTATTGAGTCATTAATAAACCTTCTACAACGCCTTCCAAACATGATTATACGAGAT 537 consensus_6790#1 CGAACTATTGAGTCATTAATAAACCTTNTACAACGCCTTCCAAACATGATTATACGAGAT 162 consensus_6790#3 ------------------------------------------------------------ consensus_6790#2 TAAATGTTCGATACGTTGACAGGAATAAGGCGAAGCCGATTGGTACGAAAAGCGGCGTAT 171 consensus_6790#0 GATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTC 597 consensus_6790#1 GATGTTGCTCATGAAGTATATCATTCATGTTCGAATTGGTCGTTAGCGCTTGATAATCTC 222 consensus_6790#3 ----------------ACGAGCATTCATGTTCGANTNGGTCGTTAGCGNTTGATAATCTC 44 consensus_6790#2 AAATACCATATTTCTGATCATCCTACAAAAA-AAATAAATCGT--GTAATTATTAAGCG- 227 * * * ** * * **** * ** *** * consensus_6790#0 ANAAGACCTGATGAAACANACGATTCAGCATCGTCACATAACGAGATTATGNTGCTCCTN 657 consensus_6790#1 AAAAGACCTGATGAAACAAACGATTCAGCATCGTCACATAACGAGATTATGT-GCTCCCT 281 consensus_6790#3 AANAGACCTGATGAAACAAACGATTCAGCATCGNCACATAACGAGATTATGTGTCTCCCT 104 consensus_6790#2 AACAGGTAAGTTAGTGCAAACAAAAGTCTATCTTCAAAAACTAGTTCTTTATGTGATAAT 287 * ** * * ** ** * *** ** * * * * consensus_6790#0 CGGTGT-ACATTNCAGTATGCATATAATGGCTTAATTNCTTCAA-TGGAGCGTTTT-TCG 714 consensus_6790#1 CGGTGTTACATTCCAGTATGCATATAATGCTTTAATTTCTTCAAATGGAGCGTTTT-TCG 340 consensus_6790#3 CGGNGTTACATTCCAGTATGCATATAATGCTTNANTNTCTCCAAATGGAGCGTTTC-CCG 163 consensus_6790#2 CAAAATGAAAGTACTCTATGAACTC--TACTTTAACGTTTAC----GCAACGCTCAGTAG 341 * * * * * * **** * * * * * * * * ** * * consensus_6790#0 ATCAC-GTCTGCTTGGTCTTT--ATATTTCGAG-ATGATCAGAA-TATGGTATT-ATACG 768 consensus_6790#1 ATCACAGTCTGCTTGGTCTTTT-ATATTTCGAGGATGATCAGAAATATGGTATTTATACG 399 consensus_6790#3 ANCACAGNCTGCTTGGTCTTTTTATATTTCGAGGATGANCAGAAATATGGTATTTATACG 223 consensus_6790#2 ATCTGAATGTGATTTTTGTTC---TGCCGTACGGTTGACGACGTCCAAGATTCTCAATCA 398 * * ** ** * ** * * *** * * * * * * * consensus_6790#0 CC-GCTTT--CGTACCA-TCGGCTTCGC--TATTC-TGTCA---CGTT-CGACATTTA-- 815 consensus_6790#1 CC-GCTTT-TCGTACCAATCGGCTTCGCCTTATTCCTGTCAACGTATC-GAACATTTAA- 455 consensus_6790#3 CCCGCTNT-TCGTACCAATCGGTTTCGNCTTATTCCNGTCAACNTNTCGCAACATTTAAC 282 consensus_6790#2 AATGTTGAATCGTAAGGAATGGCTACAT--AACCAAATTGCACTGATCCCCAAATGCC-- 454 * * **** ** * * * * * * ** consensus_6790#0 -CTAGA--TTCGTACACAC------TATAGAATATCTT-ATTT--ATTTATAAATNGNCG 863 consensus_6790#1 ACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTTATTTTAATTTTATAATATTTG 515 consensus_6790#3 ACTAGTATTCCGTAACAACAACTAATAGGAAATATCTTNATCTTAATCTCATTNTATTTG 342 consensus_6790#2 -CTGGTA--CGGTCGAAAGTGGGGGGGGGGGGCTTGGCTCTTTCCTTCCTGAGATGCCTT 511 ** * ** * * * * * * consensus_6790#0 ACCGT-N---GATAA------------ 874 consensus_6790#1 TTCGT-ACC-GGTAGAAATAAAGTATG 540 consensus_6790#3 NCCGN-CCCCCGCAGAANT-------- 360 consensus_6790#2 CATATGACCATGCCTACTT-------- 530 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||