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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6791#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1080 fasta sequence
[TAAATCAATTCCACCTTATCAAGCTGGTCAACCTATTGAACAGCTTCAGGAGCAACTTCGATGGGTTCAAAGACAACTGGAGGAATCTTCCAACTTTAAAAATATGGTTGGGTCTCCAACAACTAATAACGTGAGATTGGCAAAATTACGCAGTGAATTCTGTATTCTACTTAGACAGTTGAAACAACGATGTAGTCAAGGTGAACTAGGTATCGATTCTTCTCTAAGTGACTTGAACAATGAACTTCAAGATATATCTTGTGAGTCCAAATTGAATTGTGCCTCAATATCAAGATCAGGAAACTCATCCCCACAAAAATCCGCACAGACATCAGTCTATCCTTGCCTTAGCGGTCAGTTCAATGTAAATCCATTTAAAATGGAACAAAATTCCACAGTTAGACGTTCAGTGACTACTGGAGACTTTGATGAAGACCCAGACTTTTACATCACAGGACAACCAGAAGTTGATGATTTTGAGGATATCGACTCCAGTGAATCAGAATTCGCTTTGAAGGAAGCCTCAAATGTGATGTCTGACAACTTATTTACAGCGACCCATAACTCAAATGTAAACGAATCTATGAATGATTACAATAATCTAAACGATTCATACAAAGAGAATACAGTTAACGGTAATGAAGGCGAATTGCATAAAAAGCGCAAACGCGATCGAAAGAACATATTTACCTCTGGGCGACGTCGTCCCTCAAAATAGCAGCGGAAGTGATTAGCGTAAACTTCATGCCTAGTCGCCGTGGTTCGCTAATGGCCCACTCTGACGTCCAGGACACTATANNAGCANAAGCTTTACTACACAGNTCATGAACACTGNTACCAANGGNTCANCTCTCANATGCCNAGAGAAATGATGTCAGTAGACGACAGATATGCGCACTTCATATGCCGTCATCGATAANGCGCATACTATAGACAGAGAGATACTTGGTAATACGCNTATTCTACACATANCACTGAATATATGGTCAAAACAGATTTATGGATGNNATATATGGCATTTGACGGATAAAACTACCCCTNCTACNTAAACCGAGCTTANTAGCATTCATTTAGAAATAA]
[-] EMBL CD137673 [TAAATCAATTCCACCTTATCAAGCTGGTCAACCTATTGAACAGCTTCAGGAGCAACTTCGATGGGTTCAAAGACAACTGGAGGAATCTTCCAACTTTAAAAATATGGTTGGGTCTCCAACAACTAATAACGTGAGATTGGCAAAATTACGCAGTGAATTCTGTATTCTACTTAGACAGTTGAAACAACGATGTAGTCAAGGTGAACTAGGTATCGATTCTTCTCTAAGTGACTTGAACAATGAACTTCAAGATATATCTTGTGAGTCCAAATTGAATTGTGCCTCAAT ]
[+] EMBL CD082169 [ cgagggaccAGGTGAACTAGGTATCGATTCTTCTCTAATTGACTTGAACAATGAACCTCAAGATATATCTTGTGAGTCCAAATTGAATTGTGCCTCAATATCAAGATCAGGAAACTCATCCCCACAAAAATCCGCACAGACATCAGTCTATCCTTGCCTTAGCGGTCAGTTCAATGTAAATCCATTTAAAATGGAACAAAATTCCACAGTTAGACGTTCAGTGACTACTGGAGACTTTGATGAAGACCCAGACTTTTACATCACAGGACAACCAGAAGTTGATGATTTTGAGGATATCGACTCCAGTGAATCAGAATTCGCTTTGAAGGAAGCCTCAAATGTGATGTCTGACAACTTATTTACAGCGACCCATAACTCAAATGTAAACGAATCTATGAATGATTACAATAATCTAAACGATTCATACAAAGAGAATACAGTTAACGGTAATGAAGGCGAATTGCATAAAAAGCGCAAACGCGATCGAAAGAACATATTTACCTCTGGGCGACGTCGTCCCTCAAAATAGCAGCGGAAGTGATTAGCGTAAACTTCATGCCTAGTCGCCGTGGTTCGCTAATGGCCCACTCTGACGTCCAGGACACTATANNAGCANAAGCTTTACTACACAGNTCATGAACACTGNTACCAANGGNTCANCTCTCANATGCCNAGAGAAATGATGTCAGTAGACGACAGATATGCGCACTTCATATGCCGTCATCGATAANGCGCATACTATAGACAGAGAGATACTTGGTAATACGCNTATTCTACACATANCACTGAATATATGGTCAAAACAGATTTATGGATGNNATATATGGCATTTGACGGATAAAACTACCCCTNCTACNTAAACCGAGCTTANTAGCATTCATTTAGAAATAA]
consensusID : consensus_6791#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence
[CGACTCCAGTGAATCAGAATTCGCTTTGAAGGAAGCCTCAAATGTGATGTCTGACAACTTATTTACAGCGACCCATAACTCAAATGTAAACGAATCTATGAATGATTACAATAATCTAAACGATTCATACAAAGAGAATACAGTTAACGGTAATGAAGGCGAATTGCATAAAAAGCGCAAACGCGATCGAAAGAACATATTTACCTCTGGGCGACGTCGTCCCTCAAAAATAGCAGCGGAAGTGATTAGCGTAAACTTCATGCCTAGTCGCCGTGGTTCGCTAATGGCCCACTCTGACGTCCAAGGACACTATAAAAGCAAAAGCTTACTAACACAGTTCATGAACACTGTAACCAAAGGTTCAACTCTCAAAATGCCAAGAGAATGATGTTCAGTAGACGACAGATATGCGCACTTCATATGCCGTCATCGATTAAAGCGCCATACTATAGAACAGAGAGGATACTTGGTAAATACGCTAATTTCTACACAATACCCACTGTATATAATGTTCAAAAACAGATTTTATGGATGTATAATAATGCAATTTGAACGGATAAAACATACCCCCTCCTACTAAAAACCCGAGCTTAATTAGCATTCATTTAAGAAATAAAT]
[+] EMBL CD079079 [CGACTCCAGTGAATCAGAATTCGCTTTGAAGGAAGCCTCAAATGTGATGTCTGACAACTTATTTACAGCGACCCATAACTCAAATGTAAACGAATCTATGAATGATTACAATAATCTAAACGATTCATACAAAGAGAATACAGTTAACGGTAATGAAGGCGAATTGCATAAAAAGCGCAAACGCGATCGAAAGAACATATTTACCTCTGGGCGACGTCGTCCCTCAAAAATAGCAGCGGAAGTGATTAGCGTAAACTTCATGCCTAGTCGCCGTGGTTCGCTAATGGCCCACTCTGACGTCCAAGGACACTATAAAAGCAAAAGCTTACTAACACAGTTCATGAACACTGTAACCAAAGGTTCAACTCTCAAAATGCCAAGAGAATGATGTTCAGTAGACGACAGATATGCGCACTTCATATGCCGTCATCGATTAAAGCGCCATACTATAGAACAGAGAGGATACTTGGTAAATACGCTAATTTCTACACAATACCCACTGTATATAATGTTCAAAAACAGATTTTATGGATGTATAATAATGCAATTTGAACGGATAAAACATACCCCCTCCTACTAAAAACCCGAGCTTAATTA ]
[-] EMBL CD075785 [ GTAAACTTCATGCCTAGTCGCCGTGGTTCGCTAATGGCCCACTCTGACGTCCAAGGCCACTATAAAAGCAAAAGCTTACTAACCCAGTTCATGAACCCTGTAACCAAAGGTTCAACTCTCAAAATGCCAAGAGAATGATGTTCAGTAGACGACAGATATGCGCACTTCATATGCCGTCATCGATTAAAGCGCCATACTATAGAACAGAGAGGATACTTGGTAAATACGCTAATTTTTACCCAATACCCCCTGTATATAATGTTCAAAAACAGATTTTATGGATGTATAATAATGCAATTTGAACGGATAAAACATACCCCCTCCTATTAAAAACCCGAGCTTAATTAGCATTCATTTAAGAAATAAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6791#0 TAAATCAATTCCACCTTATCAAGCTGGTCAACCTATTGAACAGCTTCAGGAGCAACTTCG 60
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 ATGGGTTCAAAGACAACTGGAGGAATCTTCCAACTTTAAAAATATGGTTGGGTCTCCAAC 120
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 AACTAATAACGTGAGATTGGCAAAATTACGCAGTGAATTCTGTATTCTACTTAGACAGTT 180
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GAAACAACGATGTAGTCAAGGTGAACTAGGTATCGATTCTTCTCTAAGTGACTTGAACAA 240
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 TGAACTTCAAGATATATCTTGTGAGTCCAAATTGAATTGTGCCTCAATATCAAGATCAGG 300
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 AAACTCATCCCCACAAAAATCCGCACAGACATCAGTCTATCCTTGCCTTAGCGGTCAGTT 360
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 CAATGTAAATCCATTTAAAATGGAACAAAATTCCACAGTTAGACGTTCAGTGACTACTGG 420
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 AGACTTTGATGAAGACCCAGACTTTTACATCACAGGACAACCAGAAGTTGATGATTTTGA 480
consensus_6791#1 ------------------------------------------------------------
consensus_6791#0 GGATATCGACTCCAGTGAATCAGAATTCGCTTTGAAGGAAGCCTCAAATGTGATGTCTGA 540
consensus_6791#1 ------CGACTCCAGTGAATCAGAATTCGCTTTGAAGGAAGCCTCAAATGTGATGTCTGA 54
******************************************************
consensus_6791#0 CAACTTATTTACAGCGACCCATAACTCAAATGTAAACGAATCTATGAATGATTACAATAA 600
consensus_6791#1 CAACTTATTTACAGCGACCCATAACTCAAATGTAAACGAATCTATGAATGATTACAATAA 114
************************************************************
consensus_6791#0 TCTAAACGATTCATACAAAGAGAATACAGTTAACGGTAATGAAGGCGAATTGCATAAAAA 660
consensus_6791#1 TCTAAACGATTCATACAAAGAGAATACAGTTAACGGTAATGAAGGCGAATTGCATAAAAA 174
************************************************************
consensus_6791#0 GCGCAAACGCGATCGAAAGAACATATTTACCTCTGGGCGACGTCGTCCCTCAAAA-TAGC 719
consensus_6791#1 GCGCAAACGCGATCGAAAGAACATATTTACCTCTGGGCGACGTCGTCCCTCAAAAATAGC 234
******************************************************* ****
consensus_6791#0 AGCGGAAGTGATTAGCGTAAACTTCATGCCTAGTCGCCGTGGTTCGCTAATGGCCCACTC 779
consensus_6791#1 AGCGGAAGTGATTAGCGTAAACTTCATGCCTAGTCGCCGTGGTTCGCTAATGGCCCACTC 294
************************************************************
consensus_6791#0 TGACGTCCA-GGACACTATANNAGCANAAGCTTTACTACACAGNTCATGAACACTGNTAC 838
consensus_6791#1 TGACGTCCAAGGACACTATAAAAGCAAAAGCTTACTAACACAGTTCATGAACACTGTAAC 354
********* ********** **** ****** ****** ************ **
consensus_6791#0 CAANGGNTCANCTCTCANA-TGCCNAGAGAAATGATGT-CAGTAGACGACAGATATGCGC 896
consensus_6791#1 CAAAGGTTCAACTCTCAAAATGCCAAGAGAA-TGATGTTCAGTAGACGACAGATATGCGC 413
*** ** *** ****** * **** ****** ****** *********************
consensus_6791#0 ACTTCATATGCCGTCATCGAT-AANGCGC-ATACTATAGA-CAGAGAG-ATACTTGGTAA 952
consensus_6791#1 ACTTCATATGCCGTCATCGATTAAAGCGCCATACTATAGAACAGAGAGGATACTTGGTAA 473
********************* ** **** ********** ******* ***********
consensus_6791#0 -TACGCNTATT-CTACACA-TANC-ACTGAATATATGGTC--AAAACAGATTT-ATGGAT 1005
consensus_6791#1 ATACGCTAATTTCTACACAATACCCACTGTATATAATGTTCAAAAACAGATTTTATGGAT 533
***** *** ******* ** * **** ***** ** *********** ******
consensus_6791#0 GNNATATATGGCATTT--GACGGATAAAAC-TACCCC-TNCTACNTAAA--CCGAGCTTA 1059
consensus_6791#1 GTATAATAATGCAATTTGAACGGATAAAACATACCCCCTCCTACTAAAAACCCGAGCTTA 593
* *** *** ** *********** ****** * **** *** *********
consensus_6791#0 NT-AGCATTCATTTA-GAAATAA-- 1080
consensus_6791#1 ATTAGCATTCATTTAAGAAATAAAT 618
* ************ *******
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||