cluster # 6805

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Schistosoma mansoni
cluster # 6805 cluster # 6805 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6805#0 length = 858 sequences # 2

consensus_6805#1 length = 431 sequences # 1
consensus_6805#2 length = 286 sequences # 1

consensusID : consensus_6805#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 858
fasta sequence

                              [GAGGGCTGCATGTGACAAGCACTGGCATGAGCATCAAACGGTTTTCGAAACTGAAATGGAACGTAAAGCTGAAGGACGTCCAGTTGGTGAAGGATGGATTCCGTTTGCTGAATTACCAGAATTAGCTAAAATTGCACTGACTGGTGTAGACAATCCAAATATTCAAACATTAGCTGATGCTTTGCCAGCAAGTTCTCGTCAAAGTCTTCTAGAAAAACAAACTTCACCTGCTATCTGTGGATCGAAAGATTAAAATAGCTGCATTAATGATGGTTGCAATAATTCTAAAGTAAATTTTGTTTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTACTTTCATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGTCATCATTATTTTTCCATTGTAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAAAGAACTTGANTAAGTGGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGTTGTAGCATATTAAAACATATCAGCTATTCAGTCCTCTCTCTGCTTTTTCATGGTTAAGTTAATTTTCTGATAGAAAACTAGTTCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTACTTTTTCACGTACTTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGATTATTTATTTTTTGGATTTTCT]

[+] EMBL CD082571             [GAGGGCTGCATGTGACAAGCACTGGCATGAGCATCAAACGGTTTTCGAAACTGAAATGGAACGTAAAGCTGAAGGACGTCCAGTTGGTGAAGGATGGATTCCGTTTGCTGAATTACCAGAATTAGCTAAAATTGCACTGACTGGTGTAGACAATCCAAATATTCAAACATTAGCTGATGCTTTGCCAGCAAGTTCTCGTCAAAGTCTTCTAGAAAAACAAACTTCACCTGCTATCTGTGGATCGAAAGATTAAAATAGCTGCATTAATGATGGTTGCAATAATTCTAAAGTAAATTTTGTTTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTACTTTCATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGTCATCATTATTTTTCCATTGTAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAAAGAACTTGANTAAGTGGGGAAGTATCAACCTTTGTGAAAAC                                                                                                                                                                                                                                  ]
[-] EMBL CD076169             [                                                                                                                                                                                                                                                                                                       TTTGTTTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTACTTTCATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGTCATCATTATTTTTCCATTGTAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAAAGAACTTGATAAAGT GGGAAGTATCACCCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGTTGTAGCATATTAAAACATATCAGCTATTCAGTCCTCTCTCTGCTTTTTCATGGTTAAGTTAATTTTCTGATAGAAAACTAGTTCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTACTTTTTCACGTACTTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGATTATTTATTTTTTGGATTTTCT]




>consensus_6805#0
GAGGGCTGCATGTGACAAGCACTGGCATGAGCATCAAACGGTTTTCGAAACTGAAATGGA
ACGTAAAGCTGAAGGACGTCCAGTTGGTGAAGGATGGATTCCGTTTGCTGAATTACCAGA
ATTAGCTAAAATTGCACTGACTGGTGTAGACAATCCAAATATTCAAACATTAGCTGATGC
TTTGCCAGCAAGTTCTCGTCAAAGTCTTCTAGAAAAACAAACTTCACCTGCTATCTGTGG
ATCGAAAGATTAAAATAGCTGCATTAATGATGGTTGCAATAATTCTAAAGTAAATTTTGT
TTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTG
CTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTACTTT
CATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGAT
ACACTTCCTTGTCATCATTATTTTTCCATTGTAGCCATTGATGTGATATACAATTTTTAA
AGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAAAGAACTTGA
NTAAGTGGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGTTGT
AGCATATTAAAACATATCAGCTATTCAGTCCTCTCTCTGCTTTTTCATGGTTAAGTTAAT
TTTCTGATAGAAAACTAGTTCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTACTTT
TTCACGTACTTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGATTAT
TTATTTTTTGGATTTTCT

consensusID : consensus_6805#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [ATTCGGCAGAGAAAATGATGGTTGCAATAATTCTAAAGTAAATTTTGTTTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTGCTTTCATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGTCATCATTATTTTTCCATTACAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAGAGACCTTGATAAAGGGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGTTGTAGCATATTCNNACCTATCAGCTAT]

[+] EMBL AI740416             [ATTCGGCAGAGAAAATGATGGTTGCAATAATTCTAAAGTAAATTTTGTTTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTGCTTTCATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGTCATCATTATTTTTCCATTACAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAGAGACCTTGATAAAGGGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGTTGTAGCATATTCNNACCTATCAGCTAT]




>consensus_6805#1
ATTCGGCAGAGAAAATGATGGTTGCAATAATTCTAAAGTAAATTTTGTTTGAATAAATTT
CTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATC
TATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTGCTTTCATTTTCCTCTT
CATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGT
CATCATTATTTTTCCATTACAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCT
ATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAGAGACCTTGATAAAGGGGGAAG
TATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGTTGTAGCATATTCNNAC
CTATCAGCTAT

consensusID : consensus_6805#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 286
fasta sequence

                              [GAAACTGAATAGGCTGTATAAAGTCACGAAGTTTGTCAGCATATTAAAACATATCCAGCCTATTCAGCCCTCTCTTCTGCTTTCCAATGGTTAAAGTTAAATTTCTGCATAGAAAACTAGTCCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTACTTTTCCACGTACTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGATTATTTATTTTTTGGATTTTCTTCAAGCTGTGATTTTCATTATTTTTTTTTCCAGAATAAAACGTATGA]

[-] EMBL AI739683             [GAAACTGAATAGGCTGTATAAAGTCACGAAGTTTGTCAGCATATTAAAACATATCCAGCCTATTCAGCCCTCTCTTCTGCTTTCCAATGGTTAAAGTTAAATTTCTGCATAGAAAACTAGTCCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTACTTTTCCACGTACTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGATTATTTATTTTTTGGATTTTCTTCAAGCTGTGATTTTCATTATTTTTTTTTCCAGAATAAAACGTATGA]




>consensus_6805#2
GAAACTGAATAGGCTGTATAAAGTCACGAAGTTTGTCAGCATATTAAAACATATCCAGCC
TATTCAGCCCTCTCTTCTGCTTTCCAATGGTTAAAGTTAAATTTCTGCATAGAAAACTAG
TCCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTACTTTTCCACGTACTTTCTTTCC
AAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGATTATTTATTTTTTGGATTTTCTT
CAAGCTGTGATTTTCATTATTTTTTTTTCCAGAATAAAACGTATGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6805#0      GAGGGCTGCATGTGACAAGCACTGGCATGAGCATCAAACGGTTTTCGAAACTGAAATGGA 60
consensus_6805#1      ------------------------------------------------------------
consensus_6805#2      ------------------------------------------------------------
                                                                                  

consensus_6805#0      ACGTAAAGCTGAAGGACGTCCAGTTGGTGAAGGATGGATTCCGTTTGCTGAATTACCAGA 120
consensus_6805#1      ------------------------------------------------------------
consensus_6805#2      ------------------------------------------------------------
                                                                                  

consensus_6805#0      ATTAGCTAAAATTGCACTGACTGGTGTAGACAATCCAAATATTCAAACATTAGCTGATGC 180
consensus_6805#1      ------------------------------------------------------------
consensus_6805#2      ------------------------------------------------------------
                                                                                  

consensus_6805#0      TTTGCCAGCAAGTTCTCGTCAAAGTCTTCTAGAAAAACAAACTTCACCTGCTATCTGTGG 240
consensus_6805#1      ------------------------------------------------------------
consensus_6805#2      ------------------------------------------------------------
                                                                                  

consensus_6805#0      ATCGAAAGATTAAAATAGCTGCATTAATGATGGTTGCAATAATTCTAAAGTAAATTTTGT 300
consensus_6805#1      ------------ATTCGGCAGAGAAAATGATGGTTGCAATAATTCTAAAGTAAATTTTGT 48
consensus_6805#2      ------------------------------------------------------------
                                                                                  

consensus_6805#0      TTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTG 360
consensus_6805#1      TTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTG 108
consensus_6805#2      ---------------GAAACTGAATAGGCTGTATAAAGTCACGAAGTTTGTCAGCATAT- 44
                                      *   *   **  **   **   **  *   **    * *** * 

consensus_6805#0      CTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTACTTT 420
consensus_6805#1      CTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTGCTTT 168
consensus_6805#2      -TAAAACATATCCA-GCCTATTCAGCCCTCTC-TTCTGCT-TTCCAATGGTTAAAGTT-- 98
                       ***   ***** *  *  **  *      ** ** **   ** ****  * *    *  

consensus_6805#0      CATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGAT 480
consensus_6805#1      CATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGAT 228
consensus_6805#2      -AAATTTCTGCATAGAAAACTAGTCCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGT 157
                       *  ** **    *      * ****  *  *** ***  *     * **** ****  *

consensus_6805#0      ACACTTCCTTGTCATCATTATTTTTCCATTGTAGCCATTGATGTGATATACAATTTTTAA 540
consensus_6805#1      ACACTTCCTTGTCATCATTATTTTTCCATTACAGCCATTGATGTGATATACAATTTTTAA 288
consensus_6805#2      ACTTTTCCACGT----ACTTTCTTTCCA--AAGATTCTCCTTAATTTCTATGATTTTTGA 211
                      **  ****  **    * * * ******         *   *    * **  ****** *

consensus_6805#0      AGTATATTTTCTATTCA--AGATTGACTGAAACAAATTATTAAC-TTATTTTAAAGAACT 597
consensus_6805#1      AGTATATTTTCTATTCA--AGATTGACTGAAACAAATTATTAAC-TTATTTTAGAGACCT 345
consensus_6805#2      AGTGGATTATTTATTTTTTGGATTTTCTTCAAGCTGTGATTTTCATTATTTTTTTTTCCA 271
                      ***  *** * ****     ****  **  **    * ***  * *******      * 

consensus_6805#0      TGANTAAGTGGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGT 657
consensus_6805#1      TGATAAAG-GGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGT 404
consensus_6805#2      GAATAAAACGTATGA--------------------------------------------- 286
                        *  **  *    *                                             

consensus_6805#0      TGTAGCATATTAAAACATATCAGCTATTCAGTCCTCTCTCTGCTTTTTCATGGTTAAGTT 717
consensus_6805#1      TGTAGCATATTCNNACCTATCAGCTAT--------------------------------- 431
consensus_6805#2      ------------------------------------------------------------
                                                                                  

consensus_6805#0      AATTTTCTGATAGAAAACTAGTTCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTAC 777
consensus_6805#1      ------------------------------------------------------------
consensus_6805#2      ------------------------------------------------------------
                                                                                  

consensus_6805#0      TTTTTCACGTACTTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGAT 837
consensus_6805#1      ------------------------------------------------------------
consensus_6805#2      ------------------------------------------------------------
                                                                                  

consensus_6805#0      TATTTATTTTTTGGATTTTCT 858
consensus_6805#1      ---------------------
consensus_6805#2      ---------------------