These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 858 fasta sequence [GAGGGCTGCATGTGACAAGCACTGGCATGAGCATCAAACGGTTTTCGAAACTGAAATGGAACGTAAAGCTGAAGGACGTCCAGTTGGTGAAGGATGGATTCCGTTTGCTGAATTACCAGAATTAGCTAAAATTGCACTGACTGGTGTAGACAATCCAAATATTCAAACATTAGCTGATGCTTTGCCAGCAAGTTCTCGTCAAAGTCTTCTAGAAAAACAAACTTCACCTGCTATCTGTGGATCGAAAGATTAAAATAGCTGCATTAATGATGGTTGCAATAATTCTAAAGTAAATTTTGTTTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTACTTTCATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGTCATCATTATTTTTCCATTGTAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAAAGAACTTGANTAAGTGGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGTTGTAGCATATTAAAACATATCAGCTATTCAGTCCTCTCTCTGCTTTTTCATGGTTAAGTTAATTTTCTGATAGAAAACTAGTTCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTACTTTTTCACGTACTTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGATTATTTATTTTTTGGATTTTCT] [+] EMBL CD082571 [GAGGGCTGCATGTGACAAGCACTGGCATGAGCATCAAACGGTTTTCGAAACTGAAATGGAACGTAAAGCTGAAGGACGTCCAGTTGGTGAAGGATGGATTCCGTTTGCTGAATTACCAGAATTAGCTAAAATTGCACTGACTGGTGTAGACAATCCAAATATTCAAACATTAGCTGATGCTTTGCCAGCAAGTTCTCGTCAAAGTCTTCTAGAAAAACAAACTTCACCTGCTATCTGTGGATCGAAAGATTAAAATAGCTGCATTAATGATGGTTGCAATAATTCTAAAGTAAATTTTGTTTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTACTTTCATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGTCATCATTATTTTTCCATTGTAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAAAGAACTTGANTAAGTGGGGAAGTATCAACCTTTGTGAAAAC ] [-] EMBL CD076169 [ TTTGTTTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTACTTTCATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGTCATCATTATTTTTCCATTGTAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAAAGAACTTGATAAAGT GGGAAGTATCACCCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGTTGTAGCATATTAAAACATATCAGCTATTCAGTCCTCTCTCTGCTTTTTCATGGTTAAGTTAATTTTCTGATAGAAAACTAGTTCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTACTTTTTCACGTACTTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGATTATTTATTTTTTGGATTTTCT] consensusID : consensus_6805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [ATTCGGCAGAGAAAATGATGGTTGCAATAATTCTAAAGTAAATTTTGTTTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTGCTTTCATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGTCATCATTATTTTTCCATTACAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAGAGACCTTGATAAAGGGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGTTGTAGCATATTCNNACCTATCAGCTAT] [+] EMBL AI740416 [ATTCGGCAGAGAAAATGATGGTTGCAATAATTCTAAAGTAAATTTTGTTTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTGCTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTGCTTTCATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGATACACTTCCTTGTCATCATTATTTTTCCATTACAGCCATTGATGTGATATACAATTTTTAAAGTATATTTTCTATTCAAGATTGACTGAAACAAATTATTAACTTATTTTAGAGACCTTGATAAAGGGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGTTGTAGCATATTCNNACCTATCAGCTAT] consensusID : consensus_6805#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [GAAACTGAATAGGCTGTATAAAGTCACGAAGTTTGTCAGCATATTAAAACATATCCAGCCTATTCAGCCCTCTCTTCTGCTTTCCAATGGTTAAAGTTAAATTTCTGCATAGAAAACTAGTCCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTACTTTTCCACGTACTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGATTATTTATTTTTTGGATTTTCTTCAAGCTGTGATTTTCATTATTTTTTTTTCCAGAATAAAACGTATGA] [-] EMBL AI739683 [GAAACTGAATAGGCTGTATAAAGTCACGAAGTTTGTCAGCATATTAAAACATATCCAGCCTATTCAGCCCTCTCTTCTGCTTTCCAATGGTTAAAGTTAAATTTCTGCATAGAAAACTAGTCCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTACTTTTCCACGTACTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGATTATTTATTTTTTGGATTTTCTTCAAGCTGTGATTTTCATTATTTTTTTTTCCAGAATAAAACGTATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6805#0 GAGGGCTGCATGTGACAAGCACTGGCATGAGCATCAAACGGTTTTCGAAACTGAAATGGA 60 consensus_6805#1 ------------------------------------------------------------ consensus_6805#2 ------------------------------------------------------------ consensus_6805#0 ACGTAAAGCTGAAGGACGTCCAGTTGGTGAAGGATGGATTCCGTTTGCTGAATTACCAGA 120 consensus_6805#1 ------------------------------------------------------------ consensus_6805#2 ------------------------------------------------------------ consensus_6805#0 ATTAGCTAAAATTGCACTGACTGGTGTAGACAATCCAAATATTCAAACATTAGCTGATGC 180 consensus_6805#1 ------------------------------------------------------------ consensus_6805#2 ------------------------------------------------------------ consensus_6805#0 TTTGCCAGCAAGTTCTCGTCAAAGTCTTCTAGAAAAACAAACTTCACCTGCTATCTGTGG 240 consensus_6805#1 ------------------------------------------------------------ consensus_6805#2 ------------------------------------------------------------ consensus_6805#0 ATCGAAAGATTAAAATAGCTGCATTAATGATGGTTGCAATAATTCTAAAGTAAATTTTGT 300 consensus_6805#1 ------------ATTCGGCAGAGAAAATGATGGTTGCAATAATTCTAAAGTAAATTTTGT 48 consensus_6805#2 ------------------------------------------------------------ consensus_6805#0 TTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTG 360 consensus_6805#1 TTGAATAAATTTCTCAATTGTTTCTATACTACTTACTATCTTGGTTTTCAGTAACATTTG 108 consensus_6805#2 ---------------GAAACTGAATAGGCTGTATAAAGTCACGAAGTTTGTCAGCATAT- 44 * * ** ** ** ** * ** * *** * consensus_6805#0 CTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTACTTT 420 consensus_6805#1 CTAATGAATATCTATACACATATATTTTATTCGTTATGTGGTTTCAATACTCATTGCTTT 168 consensus_6805#2 -TAAAACATATCCA-GCCTATTCAGCCCTCTC-TTCTGCT-TTCCAATGGTTAAAGTT-- 98 *** ***** * * ** * ** ** ** ** **** * * * consensus_6805#0 CATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGAT 480 consensus_6805#1 CATTTTCCTCTTCATTGGTGTTGTCCTTATTATTCTTTCCTTACAATCATTTGAATTGAT 228 consensus_6805#2 -AAATTTCTGCATAGAAAACTAGTCCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGT 157 * ** ** * * **** * *** *** * * **** **** * consensus_6805#0 ACACTTCCTTGTCATCATTATTTTTCCATTGTAGCCATTGATGTGATATACAATTTTTAA 540 consensus_6805#1 ACACTTCCTTGTCATCATTATTTTTCCATTACAGCCATTGATGTGATATACAATTTTTAA 288 consensus_6805#2 ACTTTTCCACGT----ACTTTCTTTCCA--AAGATTCTCCTTAATTTCTATGATTTTTGA 211 ** **** ** * * * ****** * * * ** ****** * consensus_6805#0 AGTATATTTTCTATTCA--AGATTGACTGAAACAAATTATTAAC-TTATTTTAAAGAACT 597 consensus_6805#1 AGTATATTTTCTATTCA--AGATTGACTGAAACAAATTATTAAC-TTATTTTAGAGACCT 345 consensus_6805#2 AGTGGATTATTTATTTTTTGGATTTTCTTCAAGCTGTGATTTTCATTATTTTTTTTTCCA 271 *** *** * **** **** ** ** * *** * ******* * consensus_6805#0 TGANTAAGTGGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGT 657 consensus_6805#1 TGATAAAG-GGGGAAGTATCAACCTTTGTGAAAACTGAATAGCTGTATAAAGTCATGAGT 404 consensus_6805#2 GAATAAAACGTATGA--------------------------------------------- 286 * ** * * consensus_6805#0 TGTAGCATATTAAAACATATCAGCTATTCAGTCCTCTCTCTGCTTTTTCATGGTTAAGTT 717 consensus_6805#1 TGTAGCATATTCNNACCTATCAGCTAT--------------------------------- 431 consensus_6805#2 ------------------------------------------------------------ consensus_6805#0 AATTTTCTGATAGAAAACTAGTTCCGAAGATTTTTTTGTCTTGCTTATTTTAATTTGTAC 777 consensus_6805#1 ------------------------------------------------------------ consensus_6805#2 ------------------------------------------------------------ consensus_6805#0 TTTTTCACGTACTTTTCTTTCCAAAGATTCTCCTTAATTTCTATGATTTTTGAAGTGGAT 837 consensus_6805#1 ------------------------------------------------------------ consensus_6805#2 ------------------------------------------------------------ consensus_6805#0 TATTTATTTTTTGGATTTTCT 858 consensus_6805#1 --------------------- consensus_6805#2 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||