These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6806#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1184 fasta sequence [CTCCAGGCCAANAATTCGGCACGAGGCGCTAATCTCCGTTTAATACTTTCAAAACGATTTGGAATATCACTCAGGACCGCGTGTTTCGATGCTTCCTGTTAAGCAACACATCATTCTGAAGATTATATCAAGAGTCCAAGCTGGCCCAGAAACACGATCTCAGAAATGTCTAGAGCTGTTGAGAAAATGGTTGGGATGGCAGTAATTTAATATATGCTTGTTAATAATCTCATATCGACTTCCCAGAATGGGTTCTTGAGGACTAAGTCATGCGACACGAACCAAATCGATTATCTGAACGATATAACTCCAAAACGAGACAACGAGCTCCACATATCGGTCCTATTGATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAATATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAAACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTNTATGATAAGAATTTANAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTTTTCCCTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGCGCATTGTACATAACAATTTTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTCAATATAAAAGTTGACGCTTCCCGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATTTAAGTAAAGTTGAGAACTTCACGAAAATCCAACCCTATATCATTTTAGAACATTTAATGGATTAATGACGGGGCAACTCCAAGTCACATGTTCCATATATGTTTTCGGTGGCACATCATGAAGGTGCTAAAAAGGAGAGTAAACAAGAAAAAACAAGAAGTAAGGCAGACAATGTTTATAACTCCTAAAGTTGAGTTCTTTTAATGGAATAATAAAAGTT] [+] EMBL CD080226 [CTCCAGGCCAANAATTCGGCACGAGGCGCTAATCTCCGTTTAATACTTTCAAAACGATTTGGAATATCACTCAGGACCGCGTGTTTCGATGCTTCCTGTTAAGCAACACATCATTCTGAAGATTATATCAAGAGTCCAAGCTGGCCCAGAAACACGATCTCAGAAATGTCTAGAGCTGTTGAGAAAATGGTTGGGATGGCAGTAATTTAATATATGCTTGTTAATAATCTCATATCGACTTCCCAGAATGGGTTCTTGAGGACTAAGTCATGCGACACGAACCAAATCGATTATCTGAACGATATAACTCCAAAACGAGACAACGAGCTCCACATATCGGTCCTATTGATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAATATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAAACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTNTATGATAAGAATTTANAAAATAATA ] [-] EMBL CD076236 [ ACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTTTTCCCTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGCGCATTGTACATAACAATTTTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTCAATATAAAAGTTGACGCTTCCCGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATTTAAGTAAAGTTGAGAACTTCACGAAAATCCAACCCTATATCATTTTAGAACATTTAATGGATTAATGACGGGGCAACTCCAAGTCACATGTTCCATATATGTTTTCGGTGGCACATCATGAAGGTGCTAAAAAGGAGAGTAAACAAGAAAAAACAAGAAGTAAGGCAGACAATGTTTATAACTCCTAAAGTTGAGTTCTTTTAATGGAATAATAAAAGTT] consensusID : consensus_6806#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [GGTCCTACGGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGGTAAACTTTATCTGTTTCTAAAACATAAACTAACACTTTTAGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAGACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTCTTCACTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGGCGCATTGTACATAACAATTCTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTAATATAAGAGTTGACGCTTCACGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATCTAAGNNTAAGTGAGAACTT] [+] EMBL CD082638 [GGTCCTACGGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGGTAAACTTTATCTGTTTCTAAAACATAAACTAACACTTTTAGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAGACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTCTTCACTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGGCGCATTGTACATAACAATTCTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTAATATAAGAGTTGACGCTTCACGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATCTAAGNNTAAGTGAGAACTT] consensusID : consensus_6806#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 263 fasta sequence [GATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAA] [-] EMBL CD147267 [GATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6806#0 CTCCAGGCCAANAATTCGGCACGAGGCGCTAATCTCCGTTTAATACTTTCAAAACGATTT 60 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 ------------------------------------------------------------ consensus_6806#0 GGAATATCACTCAGGACCGCGTGTTTCGATGCTTCCTGTTAAGCAACACATCATTCTGAA 120 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 ------------------------------------------------------------ consensus_6806#0 GATTATATCAAGAGTCCAAGCTGGCCCAGAAACACGATCTCAGAAATGTCTAGAGCTGTT 180 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 ------------------------------------------------------------ consensus_6806#0 GAGAAAATGGTTGGGATGGCAGTAATTTAATATATGCTTGTTAATAATCTCATATCGACT 240 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 ------------------------------------------------------------ consensus_6806#0 TCCCAGAATGGGTTCTTGAGGACTAAGTCATGCGACACGAACCAAATCGATTATCTGAAC 300 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 ------------------------------------------------------------ consensus_6806#0 GATATAACTCCAAAACGAGACAACGAGCTCCACATATCGGTCCTATTGATCGGATTTAAG 360 consensus_6806#2 -----------------------------------------------GATCGGATTTAAG 13 consensus_6806#1 ------------------------------------------------------------ consensus_6806#0 ACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGG-ATCCATAACTCACC 419 consensus_6806#2 ACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGG-ATCCATAACTCACC 72 consensus_6806#1 ----------------------------------GGTCCTACGGGGATCCATAACTCACC 26 ********** ************** consensus_6806#0 ACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTT 479 consensus_6806#2 ACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAG----------- 121 consensus_6806#1 ACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTT 86 ************************************************* consensus_6806#0 CCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGT 539 consensus_6806#2 ---------------------------AAGAAGTTTCCTACAGACACAATTCCGAACCGT 154 consensus_6806#1 CCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGT 146 ********************************* consensus_6806#0 TCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAA----------- 588 consensus_6806#2 TCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTT 214 consensus_6806#1 TCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTT 206 ************************************************* consensus_6806#0 ------------------------------------------------TATGCAAAATAA 600 consensus_6806#2 GGCTTG------------------------------------------TATGCAAAATAA 232 consensus_6806#1 GGCTTGGTAAACTTTATCTGTTTCTAAAACATAAACTAACACTTTTAGTATGCAAAATAA 266 ************ consensus_6806#0 GCAGTTGATGCCGTCTACTGAACAGGGGAAAACAAACAGCATACCAAACAGTAACCGAAG 660 consensus_6806#2 GCAGTTGATGCCGTCTACTGAACAGGGGAAA----------------------------- 263 consensus_6806#1 GCAGTTGATGCCGTCTACTGAACAGGGGAAGACAAACAGCATACCAAACAGTAACCGAAG 326 ****************************** consensus_6806#0 GATAAAAAATGAGTCGAAAAACCCAATATATTNTATGATAAGAATTTANAAAATAATAAC 720 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 GATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAAC 386 consensus_6806#0 ATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTA 780 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 ATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTA 446 consensus_6806#0 CAAATGATACAGTTTTCCCTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGG-CG 839 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 CAAATGATACAGTCTTCACTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGGCG 506 consensus_6806#0 CATTGTACATAACAATTTTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTC 899 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 CATTGTACATAACAATTCTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGT- 565 consensus_6806#0 AATATAAAAGTTGACGCTTCCCGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAAT 959 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 AATATAAGAGTTGACGCTTCACGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAAT 625 consensus_6806#0 GAATTTAAGTAAAGTTGAGAACTTCACGAAAATCCAACCCTATATCATTTTAGAACATTT 1019 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 GAATCTAAGNNTAAGTGAGAACTT------------------------------------ 649 consensus_6806#0 AATGGATTAATGACGGGGCAACTCCAAGTCACATGTTCCATATATGTTTTCGGTGGCACA 1079 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 ------------------------------------------------------------ consensus_6806#0 TCATGAAGGTGCTAAAAAGGAGAGTAAACAAGAAAAAACAAGAAGTAAGGCAGACAATGT 1139 consensus_6806#2 ------------------------------------------------------------ consensus_6806#1 ------------------------------------------------------------ consensus_6806#0 TTATAACTCCTAAAGTTGAGTTCTTTTAATGGAATAATAAAAGTT 1184 consensus_6806#2 --------------------------------------------- consensus_6806#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||