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Schistosoma mansoni
cluster # 6806 cluster # 6806       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6806#0 length = 1184 sequences # 2  
consensus_6806#1 length = 649 sequences # 1  
consensus_6806#2 length = 263 sequences # 1  

consensusID : consensus_6806#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1184
fasta sequence
                              [CTCCAGGCCAANAATTCGGCACGAGGCGCTAATCTCCGTTTAATACTTTCAAAACGATTTGGAATATCACTCAGGACCGCGTGTTTCGATGCTTCCTGTTAAGCAACACATCATTCTGAAGATTATATCAAGAGTCCAAGCTGGCCCAGAAACACGATCTCAGAAATGTCTAGAGCTGTTGAGAAAATGGTTGGGATGGCAGTAATTTAATATATGCTTGTTAATAATCTCATATCGACTTCCCAGAATGGGTTCTTGAGGACTAAGTCATGCGACACGAACCAAATCGATTATCTGAACGATATAACTCCAAAACGAGACAACGAGCTCCACATATCGGTCCTATTGATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAATATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAAACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTNTATGATAAGAATTTANAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTTTTCCCTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGCGCATTGTACATAACAATTTTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTCAATATAAAAGTTGACGCTTCCCGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATTTAAGTAAAGTTGAGAACTTCACGAAAATCCAACCCTATATCATTTTAGAACATTTAATGGATTAATGACGGGGCAACTCCAAGTCACATGTTCCATATATGTTTTCGGTGGCACATCATGAAGGTGCTAAAAAGGAGAGTAAACAAGAAAAAACAAGAAGTAAGGCAGACAATGTTTATAACTCCTAAAGTTGAGTTCTTTTAATGGAATAATAAAAGTT]

[+] EMBL CD080226             [CTCCAGGCCAANAATTCGGCACGAGGCGCTAATCTCCGTTTAATACTTTCAAAACGATTTGGAATATCACTCAGGACCGCGTGTTTCGATGCTTCCTGTTAAGCAACACATCATTCTGAAGATTATATCAAGAGTCCAAGCTGGCCCAGAAACACGATCTCAGAAATGTCTAGAGCTGTTGAGAAAATGGTTGGGATGGCAGTAATTTAATATATGCTTGTTAATAATCTCATATCGACTTCCCAGAATGGGTTCTTGAGGACTAAGTCATGCGACACGAACCAAATCGATTATCTGAACGATATAACTCCAAAACGAGACAACGAGCTCCACATATCGGTCCTATTGATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAATATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAAACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTNTATGATAAGAATTTANAAAATAATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CD076236             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTTTTCCCTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGCGCATTGTACATAACAATTTTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTCAATATAAAAGTTGACGCTTCCCGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATTTAAGTAAAGTTGAGAACTTCACGAAAATCCAACCCTATATCATTTTAGAACATTTAATGGATTAATGACGGGGCAACTCCAAGTCACATGTTCCATATATGTTTTCGGTGGCACATCATGAAGGTGCTAAAAAGGAGAGTAAACAAGAAAAAACAAGAAGTAAGGCAGACAATGTTTATAACTCCTAAAGTTGAGTTCTTTTAATGGAATAATAAAAGTT]


>consensus_6806#0 CTCCAGGCCAANAATTCGGCACGAGGCGCTAATCTCCGTTTAATACTTTCAAAACGATTT GGAATATCACTCAGGACCGCGTGTTTCGATGCTTCCTGTTAAGCAACACATCATTCTGAA GATTATATCAAGAGTCCAAGCTGGCCCAGAAACACGATCTCAGAAATGTCTAGAGCTGTT GAGAAAATGGTTGGGATGGCAGTAATTTAATATATGCTTGTTAATAATCTCATATCGACT TCCCAGAATGGGTTCTTGAGGACTAAGTCATGCGACACGAACCAAATCGATTATCTGAAC GATATAACTCCAAAACGAGACAACGAGCTCCACATATCGGTCCTATTGATCGGATTTAAG ACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCA CGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTC CTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTT CCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAATATGCAAAATAA GCAGTTGATGCCGTCTACTGAACAGGGGAAAACAAACAGCATACCAAACAGTAACCGAAG GATAAAAAATGAGTCGAAAAACCCAATATATTNTATGATAAGAATTTANAAAATAATAAC ATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTA CAAATGATACAGTTTTCCCTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGCGC ATTGTACATAACAATTTTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTCA ATATAAAAGTTGACGCTTCCCGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATG AATTTAAGTAAAGTTGAGAACTTCACGAAAATCCAACCCTATATCATTTTAGAACATTTA ATGGATTAATGACGGGGCAACTCCAAGTCACATGTTCCATATATGTTTTCGGTGGCACAT CATGAAGGTGCTAAAAAGGAGAGTAAACAAGAAAAAACAAGAAGTAAGGCAGACAATGTT TATAACTCCTAAAGTTGAGTTCTTTTAATGGAATAATAAAAGTT



consensusID : consensus_6806#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence
                              [GGTCCTACGGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGGTAAACTTTATCTGTTTCTAAAACATAAACTAACACTTTTAGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAGACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTCTTCACTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGGCGCATTGTACATAACAATTCTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTAATATAAGAGTTGACGCTTCACGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATCTAAGNNTAAGTGAGAACTT]

[+] EMBL CD082638             [GGTCCTACGGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGGTAAACTTTATCTGTTTCTAAAACATAAACTAACACTTTTAGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAGACAAACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTCTTCACTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGGCGCATTGTACATAACAATTCTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTAATATAAGAGTTGACGCTTCACGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAATGAATCTAAGNNTAAGTGAGAACTT]


>consensus_6806#1 GGTCCTACGGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACAT AAGCGAACAGGAAAGTATGATGATTTCCTTTTATCACCAAAATCAATTCTAGGAAGAAGT TTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAG TCAAAGTCAGAACAAGTAAGCTATTTGGCTTGGTAAACTTTATCTGTTTCTAAAACATAA ACTAACACTTTTAGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAGACA AACAGCATACCAAACAGTAACCGAAGGATAAAAAATGAGTCGAAAAACCCAATATATTTT ATGATAAGAATTAAAAAAATAATAACATGTTCTCAAACAATATTTCGCATGTGACATGTT AGTTTACAGGCAAGACCAAATTGTTACAAATGATACAGTCTTCACTGTTATAAGTTACTC AGTTAGGTTTATATGTTATAAGGGCGCATTGTACATAACAATTCTCGCATGTGAATATAA ATAATGTCGTTAAGACTCGAGCTGTAATATAAGAGTTGACGCTTCACGATGGTTGAGTTG TGACGTGCAGTCGATTGTTTACAATGAATCTAAGNNTAAGTGAGAACTT



consensusID : consensus_6806#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence
                              [GATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAA]

[-] EMBL CD147267             [GATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGATCCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGTATGCAAAATAAGCAGTTGATGCCGTCTACTGAACAGGGGAAA]


>consensus_6806#2 GATCGGATTTAAGACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGGAT CCATAACTCACCACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAA GAAGAAGTTTCCTACAGACACAATTCCGAACCGTTCCCAAGACTGTCAATCGCAGAGTCT TAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTTGGCTTGTATGCAAAATAAGCAGTTGA TGCCGTCTACTGAACAGGGGAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6806#0      CTCCAGGCCAANAATTCGGCACGAGGCGCTAATCTCCGTTTAATACTTTCAAAACGATTT 60
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#0      GGAATATCACTCAGGACCGCGTGTTTCGATGCTTCCTGTTAAGCAACACATCATTCTGAA 120
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#0      GATTATATCAAGAGTCCAAGCTGGCCCAGAAACACGATCTCAGAAATGTCTAGAGCTGTT 180
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#0      GAGAAAATGGTTGGGATGGCAGTAATTTAATATATGCTTGTTAATAATCTCATATCGACT 240
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#0      TCCCAGAATGGGTTCTTGAGGACTAAGTCATGCGACACGAACCAAATCGATTATCTGAAC 300
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#0      GATATAACTCCAAAACGAGACAACGAGCTCCACATATCGGTCCTATTGATCGGATTTAAG 360
consensus_6806#2      -----------------------------------------------GATCGGATTTAAG 13
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#0      ACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGG-ATCCATAACTCACC 419
consensus_6806#2      ACGGCTTTCGGCAAGGTACCACACGGAATACTAAAGTCCTACGGG-ATCCATAACTCACC 72
consensus_6806#1      ----------------------------------GGTCCTACGGGGATCCATAACTCACC 26
                                                         ********** **************

consensus_6806#0      ACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTT 479
consensus_6806#2      ACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAG----------- 121
consensus_6806#1      ACGCTCATGATATGTTCCATTCCTAACCAAACATAAGCGAACAGGAAAGTATGATGATTT 86
                      *************************************************           

consensus_6806#0      CCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGT 539
consensus_6806#2      ---------------------------AAGAAGTTTCCTACAGACACAATTCCGAACCGT 154
consensus_6806#1      CCTTTTATCACCAAAATCAATTCTAGGAAGAAGTTTCCTACAGACACAATTCCGAACCGT 146
                                                 *********************************

consensus_6806#0      TCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAA----------- 588
consensus_6806#2      TCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTT 214
consensus_6806#1      TCCCAAGACTGTCAATCGCAGAGTCTTAGCTTAGTCAAAGTCAGAACAAGTAAGCTATTT 206
                      *************************************************           

consensus_6806#0      ------------------------------------------------TATGCAAAATAA 600
consensus_6806#2      GGCTTG------------------------------------------TATGCAAAATAA 232
consensus_6806#1      GGCTTGGTAAACTTTATCTGTTTCTAAAACATAAACTAACACTTTTAGTATGCAAAATAA 266
                                                                      ************

consensus_6806#0      GCAGTTGATGCCGTCTACTGAACAGGGGAAAACAAACAGCATACCAAACAGTAACCGAAG 660
consensus_6806#2      GCAGTTGATGCCGTCTACTGAACAGGGGAAA----------------------------- 263
consensus_6806#1      GCAGTTGATGCCGTCTACTGAACAGGGGAAGACAAACAGCATACCAAACAGTAACCGAAG 326
                      ******************************                              

consensus_6806#0      GATAAAAAATGAGTCGAAAAACCCAATATATTNTATGATAAGAATTTANAAAATAATAAC 720
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      GATAAAAAATGAGTCGAAAAACCCAATATATTTTATGATAAGAATTAAAAAAATAATAAC 386
                                                                                  

consensus_6806#0      ATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTA 780
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      ATGTTCTCAAACAATATTTCGCATGTGACATGTTAGTTTACAGGCAAGACCAAATTGTTA 446
                                                                                  

consensus_6806#0      CAAATGATACAGTTTTCCCTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGG-CG 839
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      CAAATGATACAGTCTTCACTGTTATAAGTTACTCAGTTAGGTTTATATGTTATAAGGGCG 506
                                                                                  

consensus_6806#0      CATTGTACATAACAATTTTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGTC 899
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      CATTGTACATAACAATTCTCGCATGTGAATATAAATAATGTCGTTAAGACTCGAGCTGT- 565
                                                                                  

consensus_6806#0      AATATAAAAGTTGACGCTTCCCGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAAT 959
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      AATATAAGAGTTGACGCTTCACGATGGTTGAGTTGTGACGTGCAGTCGATTGTTTACAAT 625
                                                                                  

consensus_6806#0      GAATTTAAGTAAAGTTGAGAACTTCACGAAAATCCAACCCTATATCATTTTAGAACATTT 1019
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      GAATCTAAGNNTAAGTGAGAACTT------------------------------------ 649
                                                                                  

consensus_6806#0      AATGGATTAATGACGGGGCAACTCCAAGTCACATGTTCCATATATGTTTTCGGTGGCACA 1079
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#0      TCATGAAGGTGCTAAAAAGGAGAGTAAACAAGAAAAAACAAGAAGTAAGGCAGACAATGT 1139
consensus_6806#2      ------------------------------------------------------------
consensus_6806#1      ------------------------------------------------------------
                                                                                  

consensus_6806#0      TTATAACTCCTAAAGTTGAGTTCTTTTAATGGAATAATAAAAGTT 1184
consensus_6806#2      ---------------------------------------------
consensus_6806#1      ---------------------------------------------
                                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)