cluster # 6809

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6809 cluster # 6809 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6809#0 length = 852 sequences # 3

consensus_6809#1 length = 248 sequences # 1

consensusID : consensus_6809#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 852
fasta sequence

                              [GTTCTTAGGACATATTGGAATTCATACGTTACTTGTGTTACCCTTGGGATTATTCGTGACTTCTGATTGCTCATGGTTGAAGACAACCAGGGTTTCGGTGGTTCTGTTGGACGACAGTACTTTGGTGATAGCGTCGTTGACAGTTCATTCTATTCTGACAACATTAAGACAAATGTTCTCAACTTCATGGGAGAACTTAAGCCGAACATCCATGGTATTAGTAATCCCGTCAAGCCGCCTCACACATCGGAAAAAAGGAGACGAATGAGTCCTGTTCTGGATAATGTTATACCCCACAAATATTACCTCTGTGAAACGGCTATGGCGAATCATTTTGCTCAAATGAATCTAACCTTACCGGTCGACGCATCCAAAATTCAAAGTGATTGCAACTCACCTCCGTTTAGTGATTCGTCCTGCTTTCCACTCAACTCAAGTCAGATCGCTTCCGCCCATCACTTGTATCAAAACTTGTCATTGTACACCAACAAAGAAGCGGGTGTTATTACTATTAATGACGATGAGGATATTGATGAAGACGAGCAAACCGAAAGGCTTTCATCCGAACCGTCACTCGCGATAGTGCCGTTTAATCCTGATCCCCTTAAAGGTTTAATTCCGCCTAATTTCTCAGATCAAGAGACAAGTAAAGAAAACTCGGACTCTAATGTGTCACCAGAGAGTCAAGTTCTCGACTCATCTACTGTCCTCCCTACATTTGATAACGTTTTGTGTATGGATATCGATTCAGATTTCACAGGATAGCAAAAACAGTCTGGTTTCTATTTGAATTATAAAAAACTGTTCAAATTGTACATTATTATCATTTCCTAACGAAGTCTACCCCCTGCG]

[+] EMBL CD060966             [GTTCTTAGGACATATTGGAATTCATACGTTACTTGTGTTACCCTTGGGATTATTCGTGACTTCTGATTGCTCATGGTTGAAGACAACCAGGGTTTCGGTGGTTCTGTTGGACGACAGTACTTTGGTGATAGCGTCGTTGACAGTTCATTCTATTCTGACAACATTAAGACAAATGTTCTCAACTTCATGGGAGAACTTAAGCCGAACATCCATGGTATTAGTAATCCCGTCAAGCCGCCTCACACATCGGAAAAAAGGAGACGAATGAGTCCTGTTCTGGATAATGTTATACCCCACAAATATTACCTCTGTGAAACGGCTATGGCGAATCATTTTGCTCAAATGAATCTAACCTTACCGGTCGACGCATCCAAAATTCAAAGTGATTGCAACTCACCTCCGTTTAGTGATTCGTCCTGCTTTCCACTCAACTCAAGTCAGATCGCTTCCGCCCATCACTTGTATCAAAACTTGTCATTGTACACCAACAAAGAAGCGGGTGTTATTACTATTAATGACGATGAGGATATTGATGAAGACGAGCAAACCGAAAGGCTTTCATCCGAACCGTCACTCGCGATAGTGCCGTTTAATCCTGATC                                                                                                                                                                                                                                                           ]
[+] EMBL CD197981             [     cgttACATATTGGAATTCATACGTTACTTGTGTTACCCTTGGGATTATTCGTGACAGCTGATTGCTCATGGTTGAAGACAACCAGGGTTTCGGTGGTTCTGTTGGACGACAGTACTTTGGTGATAGCGTCGTTGACAGTTCATTCTATTCTGACAACATTAAGACAAATGTTTTCAACTTCATGGGAGAACTTAAGCCGAACATCCATGGTATTAGTAATCCCGTCAAGCCGCCTCACACATCGGAAAAAAGGAGACGAATGAGTCCTGTTCTGGATAATGTTATACCCCACAAATATTACCTCTGTGAAACGGCTATGGCGAATCATTTTGCTCAAATGAATCTAACCTTACCGGTCGACGCATCCAAAATTCAAAGTGATTGCAACTCACCTCCGTTTAGTGATTCGTCCTGCTTTCCACTCAACTCAAGTCAGATCGCTTCCGCCCATCACTTGTATCAAAACTTGTCATTGTACACCAACAAAGAAGCGGGTGTTATTACTATNTATGACGATGANGATATTGATG                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD060720             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGATATTTATAAAGACGAGCAAACCGAAAGGCTTTCATCCGAACCGTCACTCGCGATAGTGCCGTTTAATCCTGATCCCCTTAAAGGTTTAATTCCGCCTAATTTCTCAGATCAAGAGACAAGTAAAGAAAACTCGGACTCTAATGTGTCACCAGAGAGTCAAGTTCTCGACTCATCTACTGTCCTCCCTACATTTGATAACGTTTTGTGTATGGATATCGATTCAGATTTCACAGGATAGCAAAAACAGTCTGGTTTCTATTTGAATTATAAAAAACTGTTCAAATTGTACATTATTATCATTTCCTAACGAAGTCTACCCCCTGCG]




>consensus_6809#0
GTTCTTAGGACATATTGGAATTCATACGTTACTTGTGTTACCCTTGGGATTATTCGTGAC
TTCTGATTGCTCATGGTTGAAGACAACCAGGGTTTCGGTGGTTCTGTTGGACGACAGTAC
TTTGGTGATAGCGTCGTTGACAGTTCATTCTATTCTGACAACATTAAGACAAATGTTCTC
AACTTCATGGGAGAACTTAAGCCGAACATCCATGGTATTAGTAATCCCGTCAAGCCGCCT
CACACATCGGAAAAAAGGAGACGAATGAGTCCTGTTCTGGATAATGTTATACCCCACAAA
TATTACCTCTGTGAAACGGCTATGGCGAATCATTTTGCTCAAATGAATCTAACCTTACCG
GTCGACGCATCCAAAATTCAAAGTGATTGCAACTCACCTCCGTTTAGTGATTCGTCCTGC
TTTCCACTCAACTCAAGTCAGATCGCTTCCGCCCATCACTTGTATCAAAACTTGTCATTG
TACACCAACAAAGAAGCGGGTGTTATTACTATTAATGACGATGAGGATATTGATGAAGAC
GAGCAAACCGAAAGGCTTTCATCCGAACCGTCACTCGCGATAGTGCCGTTTAATCCTGAT
CCCCTTAAAGGTTTAATTCCGCCTAATTTCTCAGATCAAGAGACAAGTAAAGAAAACTCG
GACTCTAATGTGTCACCAGAGAGTCAAGTTCTCGACTCATCTACTGTCCTCCCTACATTT
GATAACGTTTTGTGTATGGATATCGATTCAGATTTCACAGGATAGCAAAAACAGTCTGGT
TTCTATTTGAATTATAAAAAACTGTTCAAATTGTACATTATTATCATTTCCTAACGAAGT
CTACCCCCTGCG

consensusID : consensus_6809#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence

                              [CAGGCCAGAATTCGTCACGAGGAAAGCGATTGCAACTCACCTCCGTTTAGTGATTCGTCCTGCTTTCCACTCAACTCAAGTCAGATCGCTTCCGCCCATCACTTGTATCAAAACTTGTCATTGTACACCAACAAAGAAGCGGGTGTTATTACTATTAATGACGATGAGGATATTGATGAAGACGAGCAAACCGAAAGATCACCCTTACGAATTTCAAATGATTTGAAGGATCACTTAAGATTAAAACG]

[+] EMBL CD078208             [CAGGCCAGAATTCGTCACGAGGAAAGCGATTGCAACTCACCTCCGTTTAGTGATTCGTCCTGCTTTCCACTCAACTCAAGTCAGATCGCTTCCGCCCATCACTTGTATCAAAACTTGTCATTGTACACCAACAAAGAAGCGGGTGTTATTACTATTAATGACGATGAGGATATTGATGAAGACGAGCAAACCGAAAGATCACCCTTACGAATTTCAAATGATTTGAAGGATCACTTAAGATTAAAACG]




>consensus_6809#1
CAGGCCAGAATTCGTCACGAGGAAAGCGATTGCAACTCACCTCCGTTTAGTGATTCGTCC
TGCTTTCCACTCAACTCAAGTCAGATCGCTTCCGCCCATCACTTGTATCAAAACTTGTCA
TTGTACACCAACAAAGAAGCGGGTGTTATTACTATTAATGACGATGAGGATATTGATGAA
GACGAGCAAACCGAAAGATCACCCTTACGAATTTCAAATGATTTGAAGGATCACTTAAGA
TTAAAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6809#0      GTTCTTAGGACATATTGGAATTCATACGTTACTTGTGTTACCCTTGGGATTATTCGTGAC 60
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      TTCTGATTGCTCATGGTTGAAGACAACCAGGGTTTCGGTGGTTCTGTTGGACGACAGTAC 120
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      TTTGGTGATAGCGTCGTTGACAGTTCATTCTATTCTGACAACATTAAGACAAATGTTCTC 180
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      AACTTCATGGGAGAACTTAAGCCGAACATCCATGGTATTAGTAATCCCGTCAAGCCGCCT 240
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      CACACATCGGAAAAAAGGAGACGAATGAGTCCTGTTCTGGATAATGTTATACCCCACAAA 300
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      TATTACCTCTGTGAAACGGCTATGGCGAATCATTTTGCTCAAATGAATCTAACCTTACCG 360
consensus_6809#1      ---------------------------------------------------------CAG 3
                                                                               * *

consensus_6809#0      GTCGACGCATCCAAAATTCAAAGTGATTGCAACTCACCTCCGTTTAGTGATTCGTCCTGC 420
consensus_6809#1      GCCAGAATTCGTCACGAGGAAAGCGATTGCAACTCACCTCCGTTTAGTGATTCGTCCTGC 63
                      * *          *     **** ************************************

consensus_6809#0      TTTCCACTCAACTCAAGTCAGATCGCTTCCGCCCATCACTTGTATCAAAACTTGTCATTG 480
consensus_6809#1      TTTCCACTCAACTCAAGTCAGATCGCTTCCGCCCATCACTTGTATCAAAACTTGTCATTG 123
                      ************************************************************

consensus_6809#0      TACACCAACAAAGAAGCGGGTGTTATTACTATTAATGACGATGAGGATATTGATGAAGAC 540
consensus_6809#1      TACACCAACAAAGAAGCGGGTGTTATTACTATTAATGACGATGAGGATATTGATGAAGAC 183
                      ************************************************************

consensus_6809#0      GAGCAAACCGAAAGGCTTTCATCCGAACCGTCACTCGCGAT--AGTGCCGTTTAATCCTG 598
consensus_6809#1      GAGCAAACCGAAAGATCACCCTTACGAATTTCAAATGATTTGAAGGATCACTTAAGATTA 243
                      **************     * *    *   ***   *   *  **   *  ****   * 

consensus_6809#0      ATCCCCTTAAAGGTTTAATTCCGCCTAATTTCTCAGATCAAGAGACAAGTAAAGAAAACT 658
consensus_6809#1      AAACG------------------------------------------------------- 248
                      *  *                                                        

consensus_6809#0      CGGACTCTAATGTGTCACCAGAGAGTCAAGTTCTCGACTCATCTACTGTCCTCCCTACAT 718
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      TTGATAACGTTTTGTGTATGGATATCGATTCAGATTTCACAGGATAGCAAAAACAGTCTG 778
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      GTTTCTATTTGAATTATAAAAAACTGTTCAAATTGTACATTATTATCATTTCCTAACGAA 838
consensus_6809#1      ------------------------------------------------------------
                                                                                  

consensus_6809#0      GTCTACCCCCTGCG 852
consensus_6809#1      --------------