cluster # 6823

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Schistosoma mansoni
cluster # 6823 cluster # 6823 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6823#0 length = 1150 sequences # 3

consensus_6823#1 length = 438 sequences # 1

consensusID : consensus_6823#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1150
fasta sequence

                              [GCAGAAATTTATCGGATCGCTCTAGCACTAATACTGAATTATTTACCCGGTGCTAGTATCATGGTCGCTTTAGCATTGGAAGCAATAGCTTATGCACATTATGTCCTTGAATATACATCAGGTGATTTCGCGTACGCATTAAATTGTGCCGAGATAGCTGGCCTAATGCTTCGTCGTTTGAATTATGGTGTTTGTATGCAAGCAGCTTCAGCGAATCGAGTAAAAGCCTTGATAATTGAAGAAATTGCTATTGACGATAATGATCCATCTAGAACAAGGTCTGATTTAAAGTTGGCACGTGATTTGCATATGGAATCGTTAGAACTTTGTGAACGAACCTATGGATTGTGGAATATTCAAACTGCAAAACATTTTGGTAATCTTGGTCGACTCTACCAATCAATGCAAAATAACAAAGAAGCAGAAATTATGCATTTAAGAGCTATTGAAATTAAAGAACGTTTACTTGGACCGACAGATTTT-GAAGTTGGCTTAAGTGTTGGTCATTTAGCTAGTCTATACAATTACGATATGGATCGATTT-AAGAAGCTGAAC-ATTGTATNTACGTTCTGTACAAATTAGTTTAAATTTATTTGGTCCTACATATAGTGGTTTAGAATATGATTATCGTGGTTTACAACGTGTTTATCATGAAATTAGGTAATTATTCAGAAATGCAACGTTATCAAGGTTTATTTGNTTATTGGTCTAAAGAAAGACAACGCCTTCGCTCATTAGAACCATGTGAATCATCAGATTCTTTGGAATTTTCTGATGAAAATAATATTATAGGTTTAACTGAACAATCCCAACTTTTAATGGAATTATTAAAAGAATATAAATATCAGTTTAAATCAATTTTTGAAAGTTTACATGTTGATTATACCAATGAAAATATGGTGAATACTGCAACAACAACGCAAGATACATTAAATATGAACTTTGGTGGCAGTAGTACTATGGAAGCTAGTCGATCAACAGGATATTAATATTTCATATGCATGTAATATATATAACATCTGTTTAATCTATGTTGTTTTATATCTAGAAAACGAGGCGTTTTCGTTTGGATATCTTTTAATTGGAGAATGAGTATTCTTTTTTCCTTTTCATTACTTCATTGTTTGTACATATGTTAAGAGAAGATAAT]

[+] EMBL CD082935             [GCAGAAATTTATCGGATCGCTCTAGCACTAATACTGAATTATTTACCCGGTGCTAGTATCATGGTCGCTTTAGCATTGGAAGCAATAGCTTATGCACATTATGTCCTTGAATATACATCAGGTGATTTCGCGTACGCATTAAATTGTGCCGAGATAGCTGGCCTAATGCTTCGTCGTTTGAATTATGGTGTTTGTATGCAAGCAGCTTCAGCGAATCGAGTAAAAGCCTTGATAATTGAAGAAATTGCTATTGACGATAATGATCCATCTAGAACAAGGTCTGATTTAAAGTTGGCACGTGATTTGCATATGGAATCGTTAGAACTTTGTGAACGAACCTATGGATTGTGGAATATTCAAACTGCAAAACATTTTGGTAATCTTGGTCGACTCTACCAATCAATGCAAAATAACAAAGAAGCAGAAATTATGCATTTAAGAGCTATTGAAATTAAAGAACGTTTACTTGGACCGACAGATTTT GAAGTTGGCTTAAGTGTTGGTCATTTAGCTAGTCTATACAATTACGATATGGATCGATTT AAGAAGCTGAAC ATTGTATNTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL SM872                [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TACTTGGACCGACAGATTTTGGAAGTTGGCTTAAGTGTTGGTCATTTAGCTAGTCTATACAATTACGATATGGATCGATTTAAAGAAGCTGAACAATTGTATTTACGTTCTGTACAAATTAGTTTAAATTTATTTGGTCCTACATATAGTGGTTTAGAATATGATTATCGTGGTTTACAACGTGTTTATCATGAAATTAGGTAATTATTCAGAAATGCAACGTTATCAAGGTTTATTTGNTTATTGGTCTAAAGAAAGACAACGCCTTCGCTCATTA                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD076519             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CGTGGTTTACAACGTGTTTATCATG AATTAGGTAATTATTCAGAAATGCAACGTTATCAAGGTTTATTTGATTATTGGTCTAAAGAAAGACAACGCCTTCGTTCATTAGAACCATGTGAATCATCAGATTCTTTGGAATTTTCTGATGAAAATAATATTATAGGTTTAACTGAACAATCCCAACTTTTAATGGAATTATTAAAAGAATATAAATATCAGTTTAAATCAATTTTTGAAAGTTTACATGTTGATTATACCAATGAAAATATGGTGAATACTGCAACAACAACGCAAGATACATTAAATATGAACTTTGGTGGCAGTAGTACTATGGAAGCTAGTCGATCAACAGGATATTAATATTTCATATGCATGTAATATATATAACATCTGTTTAATCTATGTTGTTTTATATCTAGAAAACGAGGCGTTTTCGTTTGGATATCTTTTAATTGGAGAATGAGTATTCTTTTTTCCTTTTCATTACTTCATTGTTTGTACATATGTTAAGAGAAGATAAT]




>consensus_6823#0
GCAGAAATTTATCGGATCGCTCTAGCACTAATACTGAATTATTTACCCGGTGCTAGTATC
ATGGTCGCTTTAGCATTGGAAGCAATAGCTTATGCACATTATGTCCTTGAATATACATCA
GGTGATTTCGCGTACGCATTAAATTGTGCCGAGATAGCTGGCCTAATGCTTCGTCGTTTG
AATTATGGTGTTTGTATGCAAGCAGCTTCAGCGAATCGAGTAAAAGCCTTGATAATTGAA
GAAATTGCTATTGACGATAATGATCCATCTAGAACAAGGTCTGATTTAAAGTTGGCACGT
GATTTGCATATGGAATCGTTAGAACTTTGTGAACGAACCTATGGATTGTGGAATATTCAA
ACTGCAAAACATTTTGGTAATCTTGGTCGACTCTACCAATCAATGCAAAATAACAAAGAA
GCAGAAATTATGCATTTAAGAGCTATTGAAATTAAAGAACGTTTACTTGGACCGACAGAT
TTTGAAGTTGGCTTAAGTGTTGGTCATTTAGCTAGTCTATACAATTACGATATGGATCGA
TTTAAGAAGCTGAACATTGTATNTACGTTCTGTACAAATTAGTTTAAATTTATTTGGTCC
TACATATAGTGGTTTAGAATATGATTATCGTGGTTTACAACGTGTTTATCATGAAATTAG
GTAATTATTCAGAAATGCAACGTTATCAAGGTTTATTTGNTTATTGGTCTAAAGAAAGAC
AACGCCTTCGCTCATTAGAACCATGTGAATCATCAGATTCTTTGGAATTTTCTGATGAAA
ATAATATTATAGGTTTAACTGAACAATCCCAACTTTTAATGGAATTATTAAAAGAATATA
AATATCAGTTTAAATCAATTTTTGAAAGTTTACATGTTGATTATACCAATGAAAATATGG
TGAATACTGCAACAACAACGCAAGATACATTAAATATGAACTTTGGTGGCAGTAGTACTA
TGGAAGCTAGTCGATCAACAGGATATTAATATTTCATATGCATGTAATATATATAACATC
TGTTTAATCTATGTTGTTTTATATCTAGAAAACGAGGCGTTTTCGTTTGGATATCTTTTA
ATTGGAGAATGAGTATTCTTTTTTCCTTTTCATTACTTCATTGTTTGTACATATGTTAAG
AGAAGATAAT

consensusID : consensus_6823#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [AACGTTATCAAGGTTTATTTGATTATTCTAAAGAAAGACAACGCCTTCGTTCATTAGAACCATGTGAATCATCAGATTCTTTGGAATTTTCTGATGAAAATAATATTATAGGTTTAACTGAACAATCACAACTTTTAATGGAATTATTAAAAGAATATAAATATCAGTTTAAATCAATTTTTGAAAGTTTACATGTTGATTATAACAATGAAAATATGGTGAATACTGCGACAACAACGCAAGATACATTAAATATGGACTTTGGGGGGCAGTAGTACTAGGGAACTATTCCGTTCCACAGGGTATTATTTTTCCAATGCATGTATATATATACATCTGGTTAAACTATGTGTTTTATATCAAAAAACGCGGCGTTTCTTTTGAGACTTTTATTGGAGAGAGTATTCTCTTTCCTCTCATGGTGGACAACGTTAAAGA]

[+] EMBL AW087120             [AACGTTATCAAGGTTTATTTGATTATTCTAAAGAAAGACAACGCCTTCGTTCATTAGAACCATGTGAATCATCAGATTCTTTGGAATTTTCTGATGAAAATAATATTATAGGTTTAACTGAACAATCACAACTTTTAATGGAATTATTAAAAGAATATAAATATCAGTTTAAATCAATTTTTGAAAGTTTACATGTTGATTATAACAATGAAAATATGGTGAATACTGCGACAACAACGCAAGATACATTAAATATGGACTTTGGGGGGCAGTAGTACTAGGGAACTATTCCGTTCCACAGGGTATTATTTTTCCAATGCATGTATATATATACATCTGGTTAAACTATGTGTTTTATATCAAAAAACGCGGCGTTTCTTTTGAGACTTTTATTGGAGAGAGTATTCTCTTTCCTCTCATGGTGGACAACGTTAAAGA]




>consensus_6823#1
AACGTTATCAAGGTTTATTTGATTATTCTAAAGAAAGACAACGCCTTCGTTCATTAGAAC
CATGTGAATCATCAGATTCTTTGGAATTTTCTGATGAAAATAATATTATAGGTTTAACTG
AACAATCACAACTTTTAATGGAATTATTAAAAGAATATAAATATCAGTTTAAATCAATTT
TTGAAAGTTTACATGTTGATTATAACAATGAAAATATGGTGAATACTGCGACAACAACGC
AAGATACATTAAATATGGACTTTGGGGGGCAGTAGTACTAGGGAACTATTCCGTTCCACA
GGGTATTATTTTTCCAATGCATGTATATATATACATCTGGTTAAACTATGTGTTTTATAT
CAAAAAACGCGGCGTTTCTTTTGAGACTTTTATTGGAGAGAGTATTCTCTTTCCTCTCAT
GGTGGACAACGTTAAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6823#0      GCAGAAATTTATCGGATCGCTCTAGCACTAATACTGAATTATTTACCCGGTGCTAGTATC 60
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      ATGGTCGCTTTAGCATTGGAAGCAATAGCTTATGCACATTATGTCCTTGAATATACATCA 120
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      GGTGATTTCGCGTACGCATTAAATTGTGCCGAGATAGCTGGCCTAATGCTTCGTCGTTTG 180
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      AATTATGGTGTTTGTATGCAAGCAGCTTCAGCGAATCGAGTAAAAGCCTTGATAATTGAA 240
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      GAAATTGCTATTGACGATAATGATCCATCTAGAACAAGGTCTGATTTAAAGTTGGCACGT 300
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      GATTTGCATATGGAATCGTTAGAACTTTGTGAACGAACCTATGGATTGTGGAATATTCAA 360
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      ACTGCAAAACATTTTGGTAATCTTGGTCGACTCTACCAATCAATGCAAAATAACAAAGAA 420
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      GCAGAAATTATGCATTTAAGAGCTATTGAAATTAAAGAACGTTTACTTGGACCGACAGAT 480
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      TTTGAAGTTGGCTTAAGTGTTGGTCATTTAGCTAGTCTATACAATTACGATATGGATCGA 540
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      TTTAAGAAGCTGAACATTGTATNTACGTTCTGTACAAATTAGTTTAAATTTATTTGGTCC 600
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      TACATATAGTGGTTTAGAATATGATTATCGTGGTTTACAACGTGTTTATCATGAAATTAG 660
consensus_6823#1      ------------------------------------------------------------
                                                                                  

consensus_6823#0      GTAATTATTCAGAAATGCAACGTTATCAAGGTTTATTTGNTTATTGGTCTAAAGAAAGAC 720
consensus_6823#1      ------------------AACGTTATCAAGGTTTATTTGATTATT---CTAAAGAAAGAC 39
                                        ********************* *****   ************

consensus_6823#0      AACGCCTTCGCTCATTAGAACCATGTGAATCATCAGATTCTTTGGAATTTTCTGATGAAA 780
consensus_6823#1      AACGCCTTCGTTCATTAGAACCATGTGAATCATCAGATTCTTTGGAATTTTCTGATGAAA 99
                      ********** *************************************************

consensus_6823#0      ATAATATTATAGGTTTAACTGAACAATCCCAACTTTTAATGGAATTATTAAAAGAATATA 840
consensus_6823#1      ATAATATTATAGGTTTAACTGAACAATCACAACTTTTAATGGAATTATTAAAAGAATATA 159
                      **************************** *******************************

consensus_6823#0      AATATCAGTTTAAATCAATTTTTGAAAGTTTACATGTTGATTATACCAATGAAAATATGG 900
consensus_6823#1      AATATCAGTTTAAATCAATTTTTGAAAGTTTACATGTTGATTATAACAATGAAAATATGG 219
                      ********************************************* **************

consensus_6823#0      TGAATACTGCAACAACAACGCAAGATACATTAAATATGAACTTTGGTGG-CAGTAGTACT 959
consensus_6823#1      TGAATACTGCGACAACAACGCAAGATACATTAAATATGGACTTTGGGGGGCAGTAGTACT 279
                      ********** *************************** ******* ** **********

consensus_6823#0      ATGGAAGCTAGTCGATCAACAGGATATTAATATTTCATATGCATGTAATATATATAACAT 1019
consensus_6823#1      AGGGAACTATTCCGTTCCACAGGGTATTATTTTTCCA-ATGCATGTA-TATATATA-CAT 336
                      * ****      ** ** ***** ***** * ** ** ********* ******** ***

consensus_6823#0      CTGTTTAATCTATGTTGTTTTATATCTAGAAAACGAGGCGTTTTCGTTTGGATATCTTTT 1079
consensus_6823#1      CTGGTTAAACTATGT-GTTTTATATC-AAAAAACGCGGCGTTTCTTTTGAGAC----TTT 390
                      *** **** ****** ********** * ****** *******   **  **     ***

consensus_6823#0      AATTGGAGAATGAGTATTCTTTTTTCCTTTTCATTACTTCATTGTTTGTACATATGTTAA 1139
consensus_6823#1      TATTGGAGA--GAGTATTCTCTTTCC--TCTCATGG----------TGGACA-ACGTTAA 435
                       ********  ********* *** *  * ****            ** *** * *****

consensus_6823#0      GAGAAGATAAT 1150
consensus_6823#1      AGA-------- 438