cluster # 6827

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Schistosoma mansoni
cluster # 6827 cluster # 6827 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6827#0 length = 677 sequences # 2

consensus_6827#1 length = 371 sequences # 2

consensusID : consensus_6827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 677
fasta sequence

                              [CAGCTAAATAATACTTCTTGACTTCTTTGTTCTCAAATGCACGCCTAATCATACTTGCAGCTTTTGTATCATAAGCAATGCATATTAAACCGCTTGTTGGACAATCGAGTCGATGGACAAAATGAAACATATTTTTCAGTTTCCAGTTAACATAGCGTGGACGGTTGTAGAACAACTGCATTTGTAGGGTTAAACAGTTAATCCATGGGGTTGTGCAGTTTATAAGTAACTCAGGATGCTTATTTATGACTAAGAAGCCTTGATTCTCATGAACTACACGCAGGTCATTTATGTGAATCCAACGGTCTCTTCTTTTACGCAGGATTTGATACAATATTATTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTAGAACCTTGGGGGTCCGCAATGA]

[+] EMBL CD126208             [CAGCTAAATAATACTTCTTGACTTCTTTGTTCTCAAATGCACGCCTAATCATACTTGCAGCTTTTGTATCATAAGCAATGCATATTAAACCGCTTGTTGGACAATCGAGTCGATGGACAAAATGAAACATATTTTTCAGTTTCCAGTTAACATAGCGTGGACGGTTGTAGAACAACTGCATTTGTAGGGTTAAACAGTTAATCCATGGGGTTGTGCAGTTTATAAGTAACTCAGGATGCTTATTTATGACTAAGAAGCCTTGATTCTCATGAACTACACGCAGGTCATTTATGTGAATCCAACGGTCTCTTCTTTTACGCAGGATTTGATACAATATTATTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATAT                                                                                                                                                                                                                                                                            ]
[-] EMBL CD061010             [                                                                                                                                                                                                                                                                                                                                             ATATTACTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTAGAACCTTGGGGGTCCGCAATGA]




>consensus_6827#0
CAGCTAAATAATACTTCTTGACTTCTTTGTTCTCAAATGCACGCCTAATCATACTTGCAG
CTTTTGTATCATAAGCAATGCATATTAAACCGCTTGTTGGACAATCGAGTCGATGGACAA
AATGAAACATATTTTTCAGTTTCCAGTTAACATAGCGTGGACGGTTGTAGAACAACTGCA
TTTGTAGGGTTAAACAGTTAATCCATGGGGTTGTGCAGTTTATAAGTAACTCAGGATGCT
TATTTATGACTAAGAAGCCTTGATTCTCATGAACTACACGCAGGTCATTTATGTGAATCC
AACGGTCTCTTCTTTTACGCAGGATTTGATACAATATTATTATATTCCAAACGACAAGAA
CATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTC
TCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTAC
AGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGT
GAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGA
TTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTAGAACC
TTGGGGGTCCGCAATGA

consensusID : consensus_6827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 371
fasta sequence

                              [AGGATCTCCTCATAGGTTCGCAGGATTTGATACAATATTACTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTGCGAACCTATGAGGGT]

[+] EMBL CD060772             [AGGATCTCCTCATAGGTTCGCAGGATTTGATACAATATTACTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTGCGAACCTATGAGGGT]
[+] EMBL CD060804             [       cactATAGCCTCGCAGGATTTGATACAATATTACTATATTCCAAACGACAAGAACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCTCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAGTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAGATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTGCGAACCTATGAGGGT]




>consensus_6827#1
AGGATCTCCTCATAGGTTCGCAGGATTTGATACAATATTACTATATTCCAAACGACAAGA
ACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTCT
CTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTTA
CAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGAG
TGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGAG
ATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTGCGAA
CCTATGAGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6827#0      CAGCTAAATAATACTTCTTGACTTCTTTGTTCTCAAATGCACGCCTAATCATACTTGCAG 60
consensus_6827#1      ------------------------------------------------------------
                                                                                  

consensus_6827#0      CTTTTGTATCATAAGCAATGCATATTAAACCGCTTGTTGGACAATCGAGTCGATGGACAA 120
consensus_6827#1      ------------------------------------------------------------
                                                                                  

consensus_6827#0      AATGAAACATATTTTTCAGTTTCCAGTTAACATAGCGTGGACGGTTGTAGAACAACTGCA 180
consensus_6827#1      ------------------------------------------------------------
                                                                                  

consensus_6827#0      TTTGTAGGGTTAAACAGTTAATCCATGGGGTTGTGCAGTTTATAAGTAACTCAGGATGCT 240
consensus_6827#1      ------------------------------------------------------------
                                                                                  

consensus_6827#0      TATTTATGACTAAGAAGCCTTGATTCTCATGAACTACACGCAGGTCATTTATGTGAATCC 300
consensus_6827#1      ------------------------------------------------------------
                                                                                  

consensus_6827#0      AACGGTCTCTTCTTT--TACGCAGGATTTGATACAATATTATTATATTCCAAACGACAAG 358
consensus_6827#1      -AGGATCTCCTCATAGGTTCGCAGGATTTGATACAATATTACTATATTCCAAACGACAAG 59
                       * * **** ** *   * ********************** ******************

consensus_6827#0      AACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTC 418
consensus_6827#1      AACATAGATCCTAAGAAGGAAAACTCCAACTTCCGAAACAATATTGGATATTGTCATTTC 119
                      ************************************************************

consensus_6827#0      TCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTT 478
consensus_6827#1      TCTCTGAAGTAGCTACACCCTTCATTTAGTGCAGCTTAATAACGTGATACCACATAAGTT 179
                      ************************************************************

consensus_6827#0      ACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGA 538
consensus_6827#1      ACAGGACAGATGAATATCTAGTGATGATAACAAATGATGACAATTCGAATTAAATCAAGA 239
                      ************************************************************

consensus_6827#0      GTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGA 598
consensus_6827#1      GTGAGATTCAGGTAATGTTATGAGTGAAGCTAGCAGTTGATAGTGTGCGTAAAGGCATGA 299
                      ************************************************************

consensus_6827#0      GATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTA-GA 657
consensus_6827#1      GATTTCACATAAGACGGATTAGAGCATCCCTCCAAACATACCGCATTCGATTCCCTGCGA 359
                      ********************************************************  **

consensus_6827#0      ACCT-TGGGGGTCCGCAATGA 677
consensus_6827#1      ACCTATGAGGGT--------- 371
                      **** ** ****