cluster # 6831

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Schistosoma mansoni
cluster # 6831 cluster # 6831 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6831#0 length = 524 sequences # 3

consensus_6831#1 length = 307 sequences # 1

consensusID : consensus_6831#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 524
fasta sequence

                              [AAACATTTGTTGCTGTGGTCTAAAATTATCATGCAGCAACAAACTGTCACTTGTTGGCACTGTGTTTGTCAATTGTATGTACGGGATTTCAAGTGACGCGACCAAGAACAACTGTGAAAGTGAGCTAATAGTCTTGAATCGAGCATGAACATGATTTACACTGTCACTGGCTAACATAGAAGATATTGCATCCAAATTGTTAAGCACATGCTGCCAACCACCACAGCTCCAAAACGTTTGGACACAACAAATAGCAAATTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCTTGAATCTGTTTCGTATTGTGAGTAATTTCATTCCATAACTCATAGGCCAGGGAAGATTCACGATGTTTCACTAGTAATTTAGCTCCCTTAGGACTACCTTTCTTATCAGGTACAATATCCTTCCACTTTTTAAGTAATTCGCGGTCAGAATCACACAGTCGTTCAACTATTTACAACTGATCCACCGGTATGGGCTCCAAACAAAATAAAGAACATAACGTTGTTG]

[+] EMBL CD188765             [AAACATTTGTTGCTGTGGTCTAAAATTATCATGCAGCAACAAACTGTCACTTGTTGGCACTGTGTTTGTCAATTGTATGTACGGGATTTCAAGTGACGCGACCAAGAACAACTGTGAAAGTGAGCTAATAGTCTTGAATCGAGCATGAACATGATTTACACTGTCACTGGCTAACATAGAAGATATTGCATCCAAATTGTTAAGCACATGCTGCCAACCACCACAGCTCCAAAACGTTTGGACACAACAAATAGCANATTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCTTGAATCTGTTTCGTATTGTGAGTAATTTCATTCCAT                                                                                                                                                                                              ]
[+] EMBL CD187501             [                                                                       ATTGTATGTACGGGATTTCAAGTGACGCGACCAAGAACAACTGTGAAAGTGAGCTAATAGTCTTGAATCGAGCATGAACATGATTTACACTGTCACTGGCTAACATAGAAGATATTGCATCCATATTGTTAAGCACATGCTGCCAACCACCACAGCTCCAAAACGTTTGGACACAACAAATAGCAAATTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCTTGAATCTGTTTCGTATTGTGAGTAATTTCATTCCATAACTCATAGGCCAGGGAAGATTCACGATGTTTCACTAGTAATTTAGCTCCCTTAGGACTACCTTTCTTATCAGGTACAATATCCTTCCACTTTTTAAGTAATTCGCGGTCAGAATCACACAGTCGTTCAACTATTTACAACTGATCCACCGGTATGGGCTCCAAACAAAATAAAGAACATAACGTTGTTG]
[-] EMBL CD189325             [                                                                                                                                                                                                             ACATGCTGCCAACCACCACAGCTCCAAAACGTTTGGACACAACAAATAGCAAGTTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCTTGAATCTGTTTCGTATTGTGAGTAATTTCATTACATA                                                                                                                                                                                             ]




>consensus_6831#0
AAACATTTGTTGCTGTGGTCTAAAATTATCATGCAGCAACAAACTGTCACTTGTTGGCAC
TGTGTTTGTCAATTGTATGTACGGGATTTCAAGTGACGCGACCAAGAACAACTGTGAAAG
TGAGCTAATAGTCTTGAATCGAGCATGAACATGATTTACACTGTCACTGGCTAACATAGA
AGATATTGCATCCAAATTGTTAAGCACATGCTGCCAACCACCACAGCTCCAAAACGTTTG
GACACAACAAATAGCAAATTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCTTG
AATCTGTTTCGTATTGTGAGTAATTTCATTCCATAACTCATAGGCCAGGGAAGATTCACG
ATGTTTCACTAGTAATTTAGCTCCCTTAGGACTACCTTTCTTATCAGGTACAATATCCTT
CCACTTTTTAAGTAATTCGCGGTCAGAATCACACAGTCGTTCAACTATTTACAACTGATC
CACCGGTATGGGCTCCAAACAAAATAAAGAACATAACGTTGTTG

consensusID : consensus_6831#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence

                              [GNCGACTCTAGAGTGATCCCCTCATAGGTTCGCAGGCAACAAGTGACAGTTTGTTGCTGCATGATAATTTTAGACCACAGCAACAAATGTTTGTTTCTGTTCCAGAAGAAATTGTCACTCACTGGATTGAATCAATTTCTAAAGCTATTCAATCTGGTTGTTTATGGTTTGCAAATTATATCTTATATACAGAGTTAAGTGATGTTGCATTGAATCAAAGGGTGATGTTGGATGAAATCTTAGACTATTTGGCTTCCCTCTATCAACAACACCTTGGTCGATTAGTATCCTGCGAACCTATGAGGGT]

[+] EMBL CD060783             [GNCGACTCTAGAGTGATCCCCTCATAGGTTCGCAGGCAACAAGTGACAGTTTGTTGCTGCATGATAATTTTAGACCACAGCAACAAATGTTTGTTTCTGTTCCAGAAGAAATTGTCACTCACTGGATTGAATCAATTTCTAAAGCTATTCAATCTGGTTGTTTATGGTTTGCAAATTATATCTTATATACAGAGTTAAGTGATGTTGCATTGAATCAAAGGGTGATGTTGGATGAAATCTTAGACTATTTGGCTTCCCTCTATCAACAACACCTTGGTCGATTAGTATCCTGCGAACCTATGAGGGT]




>consensus_6831#1
GNCGACTCTAGAGTGATCCCCTCATAGGTTCGCAGGCAACAAGTGACAGTTTGTTGCTGC
ATGATAATTTTAGACCACAGCAACAAATGTTTGTTTCTGTTCCAGAAGAAATTGTCACTC
ACTGGATTGAATCAATTTCTAAAGCTATTCAATCTGGTTGTTTATGGTTTGCAAATTATA
TCTTATATACAGAGTTAAGTGATGTTGCATTGAATCAAAGGGTGATGTTGGATGAAATCT
TAGACTATTTGGCTTCCCTCTATCAACAACACCTTGGTCGATTAGTATCCTGCGAACCTA
TGAGGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6831#0      AAACATTTGTTGCTGTGGTCTAAAATTATCATGCAGCAACAAACTGTCACTTGTTGGCAC 60
consensus_6831#1      ------------------------------------------------------------
                                                                                  

consensus_6831#0      TGTGTTTGTCAATTGTATGTACGGGATTTCAAGTGACGCGACCAAGAACAACTGTGAAAG 120
consensus_6831#1      ------------------------------------------------------------
                                                                                  

consensus_6831#0      TGAGCTAATAGTCTTGAATCGAGCATGAACATGATTTACACTGTCACTGGCTAACATAGA 180
consensus_6831#1      -------------------------------------------------GNCGACTCTAG 11
                                                                       *   **     

consensus_6831#0      AGATATTGCATC-CAAATTGTTAAGCA-CATGCTGCCAACCACCACAGCTCCAAAACGTT 238
consensus_6831#1      AGTGATCCCCTCATAGGTTCGCAGGCAACAAGTGACAGTTTGTTGCTGCATGATAATTTT 71
                      **  **  * **  *  **   * *** ** *   *         * **   * **  **

consensus_6831#0      TGGACACAACAAATAGCAAATTCATTGCGCGTATTGACGGTACAAAAATCAGAATTCCCT 298
consensus_6831#1      AGACCACAGCAA----CAAATGT-TTGTTTCTGTTCCAGA---AGAAATTGTCACTCACT 123
                       *  **** ***    *****   ***    * **   *    * ****    * ** **

consensus_6831#0      TGAATCTGTTTCGTATTGTGAGTAATTTCATTCCATAACTCATAGGCCAGGGAAGATTCA 358
consensus_6831#1      -GGATTGAATCAATTTCTAAAGCTATTCAATCTGGTTGTTTATGGTTTGCAAATTATATC 182
                       * **    *   * *    **  ***  **    *   * ** *       *  **   

consensus_6831#0      CGATGTTTCACTAGTAATTTA-GCTCCCTTAGGACTACCTTTCTTATCAGGTACAATATC 417
consensus_6831#1      TTATATA-CAGAGTTAAGTGATGTTGCATTGAATCAAAGGGTGATGTTGGATGAAAT--- 238
                        ** *  **    *** * * * * * **    * *    *  * *  * *  ***   

consensus_6831#0      CTTCCACTTTTTAAGTAATTCGCGGTCAGAATCACACAGTCGTTCAACTATTTACAACTG 477
consensus_6831#1      CTTAGACTATTTGGCT---TCCCTCTATCAACAACACCTTGGTCGATTAGTATCCTGCGA 295
                      ***  *** ***   *   ** *  *   **  ****  * **  *    * * *  *  

consensus_6831#0      ATCCACCGGTATGGGCTCCAAACAAAATAAAGAACATAACGTTGTTG 524
consensus_6831#1      ACCTATGAGGGT----------------------------------- 307
                      * * *   *  *