cluster # 6843

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Schistosoma mansoni
cluster # 6843 cluster # 6843 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6843#0 length = 495 sequences # 2

consensus_6843#1 length = 441 sequences # 2

consensusID : consensus_6843#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 495
fasta sequence

                              [CGGATCCTACCACTTTTCGATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCACTAATAAACCAAAAGTGGAAAACTCTACCACAGATGGTACTACTTATACCACAACCCCCAGTCATTTTAGTACTTCCACAAGCACAAACGATGCTACAAATTCAAAATTTCAACGAATATTCTACATGATAGTTGGATTGATCAGTTTAATGGCAATCAATTGATGAAAAGAAGCACTTATTTTTTGTAATCAATGTATAACTAGTTTCATGTATTTCATAATACAATTCATTTGAATGATTAATAGTGATTGAATAGTTACCATCTCTATTCTGTAATATGAACATCCTTTTAATTGATTATAATCAGTAATTAGTTACAAAATTGAATTATGTATATTAAATTTTTTCTCAAGATTATAATGGAGATATATAATAAGCAATTCGATAAGCAAAAATAAAATA]

[+] EMBL CD083266             [CGGATCCTACCACTTTTCGATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCACTAATAAACCAAAAGTGGAAAACTCTACCACAGATGGTACTACTTATACCACAACCCCCAGTCATTTTAGTACTTCCACAAGCACAAACGATGCTACAAATTCAAAATTTCAACGAATATTCTACATGATAGTTGGATTGATCAGTTTAATGGCAATCAATTGATGAAAAGAAGCACTTATTTTTTGTAATCAATGTATAACTAGTTTCATGTATTTCATAATACAATTCATTTGAATGATTAATAGTGATTGAATAGTTACCATCTCTATTCTGTAATATGAACATCCTTTTAATTGATTATAATCAGTAATTAGTTACAAAATTGAATTATGTATATTAAATTTTTTCTCAAGATTATAATGGAGATATATAATAAGCAATTCGATAAGCAAAAATAAAAT ]
[-] EMBL CD076837             [CGGATCCTACCAC TTTCGATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCACTAATAAACCAAAAGTGGAAAACTCTACCACAGATGGTACTACTTATACCACAACCCCCAGTCATTTTAGTACTTCCACAAGCACAAACGATGCTACAAATTCAAAATTTCAACGAATATTCTACATGATAGTTGGATTGATCAGTTTAATGGCAATCAATTGATGAAAAGAAGCACTTATTTTTTGTAATCAATGTATAACTAGTTTCATGTATTTCATAATACAATTCATTTGAATGATTAATAGTGATTGAATAGTTACCATCTCTATTCTGTAATATGAACATCCTTTTAATTGATTATAATCAGTAATTAGTTACAAAATTGAATTATGTATATTAAATTTTTTCTCAAGATTATAATGGAGATATATAATAAGCAATTCGATAAGCAAAAATAAAATA]




>consensus_6843#0
CGGATCCTACCACTTTTCGATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAAT
ACAACAGTGACCAGTACAACAACTGAGTTCACTAATAAACCAAAAGTGGAAAACTCTACC
ACAGATGGTACTACTTATACCACAACCCCCAGTCATTTTAGTACTTCCACAAGCACAAAC
GATGCTACAAATTCAAAATTTCAACGAATATTCTACATGATAGTTGGATTGATCAGTTTA
ATGGCAATCAATTGATGAAAAGAAGCACTTATTTTTTGTAATCAATGTATAACTAGTTTC
ATGTATTTCATAATACAATTCATTTGAATGATTAATAGTGATTGAATAGTTACCATCTCT
ATTCTGTAATATGAACATCCTTTTAATTGATTATAATCAGTAATTAGTTACAAAATTGAA
TTATGTATATTAAATTTTTTCTCAAGATTATAATGGAGATATATAATAAGCAATTCGATA
AGCAAAAATAAAATA

consensusID : consensus_6843#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 441
fasta sequence

                              [ATTATACAGATAGACTCTACTACGGATCCTACCACTTTCGATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCTCATCATTAAACCAAATGTGG-AAACTCTA-CACAG-TGGTACTACTTATACCACAA-CCCCAGTCATTTTAGTACTT-CACAAGCACAAACGATGCTACAAATTCAAAATTTCAACGAGTATTCTACATGATAGTTGGATTGATCAGTTTAATGGCAATCAATTGATG-AAAGAAG-ACTTA-TTTTTTGTAATCAATGTATAACTAGTTTCATGTATTTCATAATACAATTCATTTGGATGATTATAGTGGTTGATAGTTACAACTCTATTCTGTATATGACATCTTTTATTGATTTTAT]

[+] EMBL AI618833             [ATTATACAGATAGACTCTACTACGGATCCTACCACTTTCGATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCTCATCATTAAACCAAATGTGG AAACTCTA CACAG TGGTACTACTTATACCACAA CCCCAGTCATTTTAGTACTT CACAAGCACAAACGATGCTACAAATTCAAAATTTCAACGAGTATTCTACATGATAGTTGGATTGATCAGTTTAATGGCAATCAATTGATG AAAGAAG ACTTA TTTTTTGTAATCAATGTATAACTAGTTTCATGTATTTCATAATACAATTCATTTGGATGATTATAGTGGTTGATAGTTACAACTCTATTCTGTATATGACATCTTTTATTGATTTTAT]
[+] EMBL AI390085             [ATGATACAGA AGACTCTACTACGGATCCTACCACTTTCGATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCAC T AATAAACCAAAAGTGGAAAACTCTACCACAGATGGTACTACTTATACCACAACCCCCAGTCATTTTAGTACTTCCACAAGCACAAACGATGCTACAAATTCAAAATTTCAACGAATATTCTACATGATAGGTGGATTGATCAGTTTAATGGCAATCAATTGATGAAAAGAAGCACTTATTTTTTTGTAATCAATGTATAACTAGTTTCATGTATTTCAAAATACAATTCATTTGag                                                             ]




>consensus_6843#1
ATTATACAGATAGACTCTACTACGGATCCTACCACTTTCGATAATACAACAGTGACCAGT
ACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACA
ACAGTGACCAGTACAACAACTGAGTTCTCATCATTAAACCAAATGTGGAAACTCTACACA
GTGGTACTACTTATACCACAACCCCAGTCATTTTAGTACTTCACAAGCACAAACGATGCT
ACAAATTCAAAATTTCAACGAGTATTCTACATGATAGTTGGATTGATCAGTTTAATGGCA
ATCAATTGATGAAAGAAGACTTATTTTTTGTAATCAATGTATAACTAGTTTCATGTATTT
CATAATACAATTCATTTGGATGATTATAGTGGTTGATAGTTACAACTCTATTCTGTATAT
GACATCTTTTATTGATTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6843#0      -------------------------------------------------------CGGAT 5
consensus_6843#1      ATTATACAGATAGACTCTACTACGGATCCTACCACTTTCGATAATACAACAGTGACCAGT 60
                                                                             *   *

consensus_6843#0      CCTACCACTT--TTCGATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACA 63
consensus_6843#1      ACAACAACTGAGTTCAATAATACAACAGTGACCAGTACAACAACTGAGTTCAATAATACA 120
                       * ** ***   *** ********************************************

consensus_6843#0      ACAGTGACCAGTACAACAACTGAGTTC--ACTAATAAACCAAAAGTGGAAAACTCTACCA 121
consensus_6843#1      ACAGTGACCAGTACAACAACTGAGTTCTCATCATTAAACCAAATGTGGAAA-CTCTAC-A 178
                      ***************************  *  * ********* ******* ****** *

consensus_6843#0      CAGATGGTACTACTTATACCACAACCCCCAGTCATTTTAGTACTTCCACAAGCACAAACG 181
consensus_6843#1      CAG-TGGTACTACTTATACCACAACCCC-AGTCATTTTAGTACTTC-ACAAGCACAAACG 235
                      *** ************************ ***************** *************

consensus_6843#0      ATGCTACAAATTCAAAATTTCAACGAATATTCTACATGATAGTTGGATTGATCAGTTTAA 241
consensus_6843#1      ATGCTACAAATTCAAAATTTCAACGAGTATTCTACATGATAGTTGGATTGATCAGTTTAA 295
                      ************************** *********************************

consensus_6843#0      TGGCAATCAATTGATGAAAAGAAGCACTTATTTTTTGTAATCAATGTATAACTAGTTTCA 301
consensus_6843#1      TGGCAATCAATTGATGAAAGAAG--ACTTATTTTTTGTAATCAATGTATAACTAGTTTCA 353
                      *******************  *   ***********************************

consensus_6843#0      TGTATTTCATAATACAATTCATTTGAATGATTAATAGTGATTGAATAGTTACCATCTCTA 361
consensus_6843#1      TGTATTTCATAATACAATTCATTTGGATGATTA-TAGTGGTTGA-TAGTTACAA-CTCTA 410
                      ************************* ******* ***** **** ******* * *****

consensus_6843#0      TTCTGTAATATGAACATCCTTTTAATTGATTATAATCAGTAATTAGTTACAAAATTGAAT 421
consensus_6843#1      TTCTGTA-TATGA-CATCTTTT--ATTGATTTTAT------------------------- 441
                      ******* ***** **** ***  ******* **                          

consensus_6843#0      TATGTATATTAAATTTTTTCTCAAGATTATAATGGAGATATATAATAAGCAATTCGATAA 481
consensus_6843#1      ------------------------------------------------------------
                                                                                  

consensus_6843#0      GCAAAAATAAAATA 495
consensus_6843#1      --------------