cluster # 6844

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Schistosoma mansoni
cluster # 6844 cluster # 6844 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6844#0 length = 715 sequences # 3

consensus_6844#1 length = 261 sequences # 1

consensusID : consensus_6844#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 715
fasta sequence

                              [ACGCATACGGTAATGCAGCTGCATGGCATGTNNNTTTTTTTTTTTTTTTTTTTTTTTAATGGCCTATTCCTTTATTATCATTGTTCTCTTTCTCTGTTCAAAGTTTAGTTCTGAAAAGTTATTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAATGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAGTTGTTTGCCAGGATTTTCAATGCATTGATAATGTCTGAACTCTAAAGGATCGTCAATGCAACGAAAAGGAATATGTACAGAGTTCAGCTTGTTTGCAAGTTCTTGCAGACTCCACGATTCACATGTTTGTCGGTTATTTACATCTTCCAAACTATGAACTAATTTCACTGTTAATTGTTGTACTCGAGGATGTTTTAACAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAG--CCATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCTTCTCAACCCGAAGCACTTTGCCAGAACGCATGGACAACATGCCTTTATTAATCCGATCCCCTACCCCCCCCCATTTTTGGGTGGCCTGGTAAAATGCCTTTGTCCCCCCAATGAGGCCCTATTTTTTTTTTCTTGACAGAAAAATTTTTTTACCCAGACTGGGTCCCCCCAGGAAGTTTTTTAACAATTTTTCTC]

[+] EMBL AW017229             [ACGCATACGGTAATGCAGCTGCATGGCATGTNNNTTTTTTTTTTTTTTTTTTTTTTTAATGGCCTATTCCTTTATTATCATTGTTCTCTTTCTCTGTTCAAAGTTTAGTTCTGAAAAGTTATTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAATGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAGTTGTTTGCCAGGATTTTCAATGCATTGATAATGTCTGAACTCTAAAGGATCGTCAATGCAACGAAAAGGAATATGTACAGAGTTCAGCTTGTTTGCAAGTTCTTGCAGACTCCACGATTCACATGTTTGTCGGTTATTTACATCTTCCAAACTATGAACTAATTTCACTGTTAATTGTTGTACTCGAGGATGTTTTAACAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAG  CCATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGC                                                                                                                                                                                                    ]
[+] EMBL CD076903             [                                                            GGCCTATTCCTTTATTATCATTGGTCTCTTTCTCTGTTCAAAGTTTAGTTCTGAAAAGTTTTTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAATGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAATTGTTTGCCAGGATTTTCAATGCATTGATAATGTCTGAACTCTAAAGGATCGTCAATGCAACGAAAAGGAATATGTACAGAGTTCAGCTTGTTTGCAAGTTCTTGCAGACTCCACGATTCACATGTTTGTCGGTTATTTACATCTTCCAAACTATGAACTAATTTCACTGTTAATTGTTGTACTCCAGGATGTTTTAACAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCCTTAAATGGAGCTTTTGCCGCGCCCCTTTCAG ACCACAAAAATGTTGCCAGATGCTCTTCTGGCTTCTCAACCCGAAGCACTTTGCCAGAACGCATGGACAACATGCCTTTATTAATCCGATCCCCTACCCCCCCCCATTTTTGGGTGGCCTGGTAAAATGCCTTTGTCCCCCCAATGAGGCCCTATTTTTTTTTTCTTGACAGAAAAATTTTTTTACCCAGACTGGGTCCCCCCAGGAAGTTTTTTAACAATTTTTCTC]
[+] EMBL AI067047             [                                                                                                           GTTCTGAAAAGTTATTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAATGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAGTTGTTTGCCAt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_6844#0
ACGCATACGGTAATGCAGCTGCATGGCATGTNNNTTTTTTTTTTTTTTTTTTTTTTTAAT
GGCCTATTCCTTTATTATCATTGTTCTCTTTCTCTGTTCAAAGTTTAGTTCTGAAAAGTT
ATTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAA
TGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAGTTGTTTGCCAGGATTTTC
AATGCATTGATAATGTCTGAACTCTAAAGGATCGTCAATGCAACGAAAAGGAATATGTAC
AGAGTTCAGCTTGTTTGCAAGTTCTTGCAGACTCCACGATTCACATGTTTGTCGGTTATT
TACATCTTCCAAACTATGAACTAATTTCACTGTTAATTGTTGTACTCGAGGATGTTTTAA
CAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAGCC
ATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCTTCTCAACCCGAAGCACTTTG
CCAGAACGCATGGACAACATGCCTTTATTAATCCGATCCCCTACCCCCCCCCATTTTTGG
GTGGCCTGGTAAAATGCCTTTGTCCCCCCAATGAGGCCCTATTTTTTTTTTCTTGACAGA
AAAATTTTTTTACCCAGACTGGGTCCCCCCAGGAAGTTTTTTAACAATTTTTCTC

consensusID : consensus_6844#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 261
fasta sequence

                              [TTTAACCAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAGCCATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCATACTCAGCCGAAGCACTTTGCCAGAACGCATGAACAACATTACTTTTATAATCGCATCCACATACAGTCCCGTATTTTGTGTTGCCTGTTAAACTGCCATTGCACCAATTCAATTCATCAAACAGATATCCTGGAAATGTAGTTTCTAGAGAACG]

[-] EMBL SM756                [TTTAACCAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAGCCATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCATACTCAGCCGAAGCACTTTGCCAGAACGCATGAACAACATTACTTTTATAATCGCATCCACATACAGTCCCGTATTTTGTGTTGCCTGTTAAACTGCCATTGCACCAATTCAATTCATCAAACAGATATCCTGGAAATGTAGTTTCTAGAGAACG]




>consensus_6844#1
TTTAACCAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGAC
CGAGCCATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCATACTCAGCCGAAGC
ACTTTGCCAGAACGCATGAACAACATTACTTTTATAATCGCATCCACATACAGTCCCGTA
TTTTGTGTTGCCTGTTAAACTGCCATTGCACCAATTCAATTCATCAAACAGATATCCTGG
AAATGTAGTTTCTAGAGAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6844#0      ACGCATACGGTAATGCAGCTGCATGGCATGTNNNTTTTTTTTTTTTTTTTTTTTTTTAAT 60
consensus_6844#1      ------------------------------------------------------------
                                                                                  

consensus_6844#0      GGCCTATTCCTTTATTATCATTGTTCTCTTTCTCTGTTCAAAGTTTAGTTCTGAAAAGTT 120
consensus_6844#1      ------------------------------------------------------------
                                                                                  

consensus_6844#0      ATTTCAATTCATGGAAGTATAAAAAGTTAAACAAATGACTAGCGGAAAAAGTATGAGTAA 180
consensus_6844#1      ------------------------------------------------------------
                                                                                  

consensus_6844#0      TGTCTCGACGTTTGACCTCGTCGAAGCTGAAAACTGACATAGTTGTTTGCCAGGATTTTC 240
consensus_6844#1      ------------------------------------------------------------
                                                                                  

consensus_6844#0      AATGCATTGATAATGTCTGAACTCTAAAGGATCGTCAATGCAACGAAAAGGAATATGTAC 300
consensus_6844#1      ------------------------------------------------------------
                                                                                  

consensus_6844#0      AGAGTTCAGCTTGTTTGCAAGTTCTTGCAGACTCCACGATTCACATGTTTGTCGGTTATT 360
consensus_6844#1      ------------------------------------------------------------
                                                                                  

consensus_6844#0      TACATCTTCCAAACTATGAACTAATTTCACTGTTAATTGTTGTACTCGAGGATGTTTTAA 420
consensus_6844#1      ------------------------------------------------------TTTAAC 6
                                                                            *** * 

consensus_6844#0      CAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAGCC 480
consensus_6844#1      CAATGGTAGTTCTATTTTTCCAAAAGTTTTATTTTCATTAAATGGAGCTTTGACCGAGCC 66
                      ************************************************************

consensus_6844#0      ATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCTTCTCAACCCGAAGCACTTTG 540
consensus_6844#1      ATTCAGTACCACAAAGATGTTACCAGATGCTCTCCTGGCATACTCAGCCGAAGCACTTTG 126
                      *************************************** *    * *************

consensus_6844#0      CCAGAACGCATGGACAACATGCCTTTATTAATCCGATCCCCTACCCCCCCCCATTTTTGG 600
consensus_6844#1      CCAGAACGCATGAACAACATTACTTTTATAATCGCATCCACATACAGTCCCGTATTTTGT 186
                      ************ *******  ****  *****  **** *   *   ***   ***** 

consensus_6844#0      GTGGCCTGGTAAAATGCCTTTGTCCCCCCAATGAGGCCCTATTTTTTTTTTCTTGACAGA 660
consensus_6844#1      GTTGCCTGTTAAACTGCCATTG--CACCAATTCAATTCATCAAACAGATATCCTGGAAAT 244
                      ** ***** **** **** ***  * ** * * *   * *        * ** **  *  

consensus_6844#0      AAAATTTTTTTACCCAGACTGGGTCCCCCCAGGAAGTTTTTTAACAATTTTTCTC 715
consensus_6844#1      GTAGTTTCTAGAGAACG-------------------------------------- 261
                        * *** *  *    *