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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 966 fasta sequence
[TGTCTTACATTTATGCAGAAAATAAAGTTACAAATTATTGATAATTGTCATATACAGCATCAGTATTCATTCAAAAGGGTTACTTTTCATATATACATAAAGTGTTCATAATGAGACAACCATTTCGTTGAAGGATATACAATCGGATATAAATTGTTCATTACAAAAACATGTACAAAGTAAAATAGTTTATCTATCTATTTTTGGAAATTTCAGCCATCCGTTTCCGCCATTCTGGCAAACTTTTTAAATATCCTAAACCAGATCCAATAGTGGTTCCAGCTGATAAAAGCCATACAACTTTTAGGTATTCGTAGTTAGGGAGTCCATACAAAGGATATGTCATGCTAAGTATGATACTTGATAATTGACAAAGAGTATTCAGCTTACTGATATTTGATGCATTCATTTCAACTTTCTCGGTGAATATCTTAGGCGTAAGTGTACCGAAATTCCGGAACATTATAAACAAAACTGTGATAACTATTCCTAAATCACGGAAAATAAAGAGACAAGCAAGGCTGACTGGGAAAAAATCCATCACTGTCAACGACAAAACCAAAGATGTCACAAGTAGTTTGTCAGCAAGAGGGTCCAAGAAACTTCCAACATTCGAGGCCTGGTTTGACACTTTTCGGGCTATAGACCCATTGCATCGGTTACGCCAGCAACGACAGTAAGACCTAAAGCCATGCTCGAATCACTACTAAAAATAGATTTAACAATAAACGGAGTAAGTGTGATTCGCGAAGCTGTAATTAAATTAGGAATTGTGAATATTTTAATATGATTATCTTTTCTAGGTGTTGAAAAAAAGTGGTTTGCTGGTACTGTCAAAACATGACAGTGGACGATTGTCCTATTAAGTATTTTCAAGCGCCACAGAGTACAAAGTCCGCTAACATGAAAAGTTGGACATGAATTGAGTTGCCGAACGACCTTCATCTTTAAAGGCCCCAGCCNCGG]
[+] EMBL CD077112 [TGTCTTACATTTATGCAGAAAATAAAGTTACAAATTATTGATAATTGTCATATACAGCATCAGTATTCATTCAAAAGGGTTACTTTTCATATATACATAAAGTGTTCATAATGAGACAACCATTTCGTTGAAGGATATACAATCGGATATAAATTGTTCATTACAAAAACATGTACAAAGTAAAATAGTTTATCTATCTATTTTTGGAAATTTCAGCCATCCGTTTCCGCCATTCTGGCAAACTTTTTAAATATCCTAAACCAGATCCAATAGTGGTTCCAGCTGATAAAAGCCATACAACTTTTAGGTATTCGTAGTTAGGGAGTCCATACAAAGGATATGTCATGCTAAGTATGATACTTGATAATTGACAAAGAGTATTCAGCTTACTGATATTTGATGCATTCATTTCAACTTTCTCGGTGAATATCTTAGGCGTAAGTGTACCGAAATTCCGGAACATTATAAACAAAACTGTGATAACTATTCCTAAATCACGGAAAATAAAGAGACAAGCAAGGCTGACTGGGAAAAAATCCATCACTGTCAACGACAAAACCAAAGATGTCACAAGTAGTTTGTCAGCAAGAGGGTCCAAGAAACTTCC ]
[+] EMBL CD077110 [TGTCTTACATTTATGCAGAAAATAAAGTTACAAATTATTGATAATTGTCATATACAGCATCAGTATTCATTCAAAAGGGTTACTTTTCATATATACATAAAGTGTTCATAATGAGACAACCATTTCGTTGAAGGATATACAATCGGATATAAATTGTTCATTACAAAAACATGTACAAAGTAAAATAGTTTATCTATCTATTTTTGGAAATTTCAGCCATCCGTTTCCGCCATTCTGGCAAACTTTTTAAATATCCTAAACCAGATCCAATAGTGGTTCCAGCTGATAAAAGCCATACAACTTTTAGGTATTCGTAGTTAGGGAGTCCATACAAAGGATATGTCATGCTAAGTATGATACTTGATAATTGACAAAGAGTATTCAGCTTACTGATATTTGATGCATTCATTTCAACTTTCTCGGTGAATATCTTAGGCGTAAGTGTACCGAAATTCCGGAACATTATAAACAAAACTGTGATAACTATTCCTAAATCACGGAAAATAAAGAGACAAGCAAGGCTGACTGGGAAAAAATCCATCACTGTCAACGACAAAACCAAAGATGTCACAAGTAGTT ]
[+] EMBL CD200553 [ ATCCATCACTGTCAACGACAAAACCATAGATGTCACAAGTAGTTTGTCAGCAAGAGGGTCCAAGAAACTTCCAACATTCGAGGCCTGGTTTGACACTTTTCGGGCTATAGACCCATTGCATCGGTTACGCCAGCAACGACAGTAAGACCTAAAGCCATGCTCGAATCACTACTAAAAATAGATTTAACAATAAACGGAGTAAGTGTGATTCGCGAAGCTGTAATTAAATTAGGAATTGTGAATATTTTAATATGATTATCTTTTCTAGGTGTTGAAAAAAAGTGGTTTGCTGGTACTGTCAAAACATGACAGTGGACGATTGTCCTATTAAGTATTTTCAAGCGCCACAGAGTACAAAGTCCGCTAACATGAAAAGTTGGACATGAATTGAGTTGCCGAACGACCTTCATCTTTAAAGGCCCCAGCCNCGG]
consensusID : consensus_6848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[ANACTAAGAAGCAAATGAGGACAAAGTTACCATAAAGGCACCGTAATATATCTTCATGGAGATAACTACACCAAACTAACATTCAAAGGTGTGCAATAAATTGTAAAGGGCAGTAGAACGTTAAACAGGATATTGAGTTAAGCTACAGATAAAACCAAGCTAATCTGAGAGAATTTCATACCACCGAATTAACTGTAAATAATAATAATAAGTAAACATACCTTACTGATATTTGATGCATTCATTTCAACTTTCTCGGTGAATATCTTAGGCGTAAGTGTACCGAAATTCCGGAACATTATAAACAAAACTGTGATAACTATTCCTAAATCACGGAAAATAAAGAGACAAGCAAGGCTGACTGGGAAAAAATCCATCACTGTCAACGACAAAACCAAAGATGTCACAAGTAGTTTGTCAGCAAGAGGGTCCAAGAAACTTCCAACATTCGAGGCCTG]
[-] EMBL CD183370 [ANACTAAGAAGCAAATGAGGACAAAGTTACCATAAAGGCACCGTAATATATCTTCATGGAGATAACTACACCAAACTAACATTCAAAGGTGTGCAATAAATTGTAAAGGGCAGTAGAACGTTAAACAGGATATTGAGTTAAGCTACAGATAAAACCAAGCTAATCTGAGAGAATTTCATACCACCGAATTAACTGTAAATAATAATAATAAGTAAACATACCTTACTGATATTTGATGCATTCATTTCAACTTTCTCGGTGAATATCTTAGGCGTAAGTGTACCGAAATTCCGGAACATTATAAACAAAACTGTGATAACTATTCCTAAATCACGGAAAATAAAGAGACAAGCAAGGCTGACTGGGAAAAAATCCATCACTGTCAACGACAAAACCAAAGATGTCACAAGTAGTTTGTCAGCAAGAGGGTCCAAGAAACTTCCAACATTCGAGGCCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6848#0 TGTCTTACATTTATGCAGAAAATAAAGTTACAAATTATTGATAATTGTCATATACAGCAT 60
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 CAGTATTCATTCAAAAGGGTTACTTTTCATATATACATAAAGTGTTCATAATGAGACAAC 120
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 CATTTCGTTGAAGGATATACAATCGGATATAAATTGTTCATTACAAAAACATGTACAAAG 180
consensus_6848#1 ------------------ANACTAAGAAGCAAA----TGAGGACAAAGTTACCATAAAGG 38
* * * ** *** * * ***** * ** *
consensus_6848#0 TAAAATAGTTTATCTATCTATTTTTGGAAATTTCAGCCATCCGTTTCCGCCATTCTGGCA 240
consensus_6848#1 CACCGTAATATATCT------TCATGGAGAT---AACTA--------CACCAAACTAACA 81
* ** * ***** * **** ** * * * * *** ** **
consensus_6848#0 AACTTTTTAAATATCCTAAACCAGATCCAATAGTGGTTCCAGCTGATAAAAGCCATACAA 300
consensus_6848#1 -----TTCAAAGGTGTGCAATAAATTGTAAAGGGCAGTAGAAC-GTTAAACAGGATATTG 135
** *** * ** * * ** * * * * * **** ***
consensus_6848#0 CTTTTAGGTATTCGTAGTTAGGGAGTCCATACAAAGGATATGTCATGCTAA-GTATGATA 359
consensus_6848#1 AGTTAAGCTACAGATAA--AACCAAGCTAATCTGAGAGAATTTCATACCACCGAATTAAC 193
** ** ** ** * * * * * ** ** **** * * * ** *
consensus_6848#0 CTTGATAATTGACAAAGAGTATTCAG--CTTACTGATATTTGATGCATTCATTTCAACTT 417
consensus_6848#1 TGTAAATAATAATAATAAGTAAACATACCTTACTGATATTTGATGCATTCATTTCAACTT 253
* * * * * ** **** ** ********************************
consensus_6848#0 TCTCGGTGAATATCTTAGGCGTAAGTGTACCGAAATTCCGGAACATTATAAACAAAACTG 477
consensus_6848#1 TCTCGGTGAATATCTTAGGCGTAAGTGTACCGAAATTCCGGAACATTATAAACAAAACTG 313
************************************************************
consensus_6848#0 TGATAACTATTCCTAAATCACGGAAAATAAAGAGACAAGCAAGGCTGACTGGGAAAAAAT 537
consensus_6848#1 TGATAACTATTCCTAAATCACGGAAAATAAAGAGACAAGCAAGGCTGACTGGGAAAAAAT 373
************************************************************
consensus_6848#0 CCATCACTGTCAACGACAAAACCAAAGATGTCACAAGTAGTTTGTCAGCAAGAGGGTCCA 597
consensus_6848#1 CCATCACTGTCAACGACAAAACCAAAGATGTCACAAGTAGTTTGTCAGCAAGAGGGTCCA 433
************************************************************
consensus_6848#0 AGAAACTTCCAACATTCGAGGCCTGGTTTGACACTTTTCGGGCTATAGACCCATTGCATC 657
consensus_6848#1 AGAAACTTCCAACATTCGAGGCCTG----------------------------------- 458
*************************
consensus_6848#0 GGTTACGCCAGCAACGACAGTAAGACCTAAAGCCATGCTCGAATCACTACTAAAAATAGA 717
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 TTTAACAATAAACGGAGTAAGTGTGATTCGCGAAGCTGTAATTAAATTAGGAATTGTGAA 777
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 TATTTTAATATGATTATCTTTTCTAGGTGTTGAAAAAAAGTGGTTTGCTGGTACTGTCAA 837
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 AACATGACAGTGGACGATTGTCCTATTAAGTATTTTCAAGCGCCACAGAGTACAAAGTCC 897
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 GCTAACATGAAAAGTTGGACATGAATTGAGTTGCCGAACGACCTTCATCTTTAAAGGCCC 957
consensus_6848#1 ------------------------------------------------------------
consensus_6848#0 CAGCCNCGG 966
consensus_6848#1 ---------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||