cluster # 6860

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Schistosoma mansoni
cluster # 6860 cluster # 6860 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6860#0 length = 894 sequences # 3

consensus_6860#1 length = 507 sequences # 1

consensusID : consensus_6860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 894
fasta sequence

                              [GTGAGAACCAACTGACCGCAGACTAACATCACCTAAAATAGAATTTTGATGCAACTTTAGTCTCCATTCTTGGCGTAGATGCATTAGTGCTTTATGGAAGGAGTTATGAGTATTATCAAATTGAGGGGGAACTAATGAATTCGATCGTCGAACTCTGGCATCAATCAATTCACTATGTCTACGACGGAGACGCTCAGCACCTTTCATTAAGATATCAGCGGCTGCAGCGATAGATCGTTTTTTTCCAGATAGGTAAAGAGAAAGGTTAGTTTCTTGCGAATCATCAGCAACAGGATTAATGGCCAGATATTTTCCTTCTTTGATGATAGAAAGAACGTCAACCAAAGCGTTGATCTCAATCAATGTAGTACGTAGGCTCTCTTTAACATTCTCCCATATTTTTGGTGTGAAGTTCTTTAGGAAAGATTCGGACTCTTTATTCTGAGAACAATTATCACCATAACTGCTGCTCTCAGAAAAGTCGATGTGATTAATAATCCTCTGGAAGTTTGCAGCTGGAGTTAGTGGTTTTTCAAGAATTTCATGACCATCCAAGAGTATTTCACGGATATCATATTCAGAGAGCGCTTCAATAGGGATCGGATGTTGGGGATAAGGGACAGGCATTGTTTCGATGATTATCTTCCACGGGGAAACCCAATTGAGTATAAGCTTTTTAAAGTATTTTTAACACAGGTCCAACTGTCAACTTCAGGTTTTTGTTTATTTTCATTGAACGATATTTTAGGAGAGATTCCTCCGAGAAGAGATGGCTTTTGAAAAGTCTGCGACGAATATAAGATATCGATTAGCAGCTTTTTGGCAGCTAAGTAAACTTAAGAACTACAATGTAGTGAAATTCGAAATTTTAACATTCATTCCTTGTCGCGGATT]

[-] EMBL CD162726             [GTGAGAACCAACTGACCGCAGACTAACATCACCTAAAATAGAATTTTGATGCAACTTTAGTCTCCATTCTTGGCGTAGATGCATTAGTGCTTTATGGAAGGAGTTATGAGTATTATCAAATTGAGGGGGAACTAATGAATTCGATCGTCGAACTCTGGCATCAATCAATTCACTATGTCTACGACGGAGACGCTCAGCACCTTTCATTAAGATATCAGCGGCTGCAGCGATAGATCGTTTTTTTCCAGATAGGTAAAGAGAAAGGTTAGTTTCTTGCGAATCATCAGCAACAGGATTAATGGCCAGATATTTTCCTTCTTTGATGATAGAAAGAACGTCAACCAAAGCGTTGATCTCAATCAATGTAGTACGTAGGCTCTCTTTAACATTCTCCCATATTTTTGGTGTGAAGTTCTTTAGGAAAGATTCGGACTCTTTATTCTGAGAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD188242             [                                                                                                                                                                                                                                                                                                                                TGATGATAGAAAGAACGTCAACCAAAGCGTTGATCTCAATCAATGTAGTACGTAGGGTCTCTTTAACATTCTCCCATATTTTTGGTGTGAAGTTCTTTAGGAAAGATTCGGACTCTTTATTCTGAGAACAATTATCACCATAACTGCTGCTCTCAGAAAAGTCGATGTGATTAATAATCCTCTGGAAGTTTGCAGCTGGAGTTAGTGGTTTTTCAAGAATTTCATGACCATCCAAGAGTATTTCACGGATATCATATTCAGAGAGCGCTTCAATAGGGATCGGATGTTGGGGATAAGGGACAGGCATTGTTTCGATGATTATCTTCCACGGGGAAACCCAATTGAGTATAAGCTTTTTAAAGTATTTTTAACACAGGTCCAACTGTCAACTTCAGGTTTTTGTTTATTTTCATTGAACGATATTTTAGGA                                                                                                                                                ]
[+] EMBL CD197098             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       aATATCATATTCAGAGAGCGCTTCAATAGGGATCGGATGTTGGGGATAAGGGACAGGCATTGTTTCGATGATTATCTTCCACGGGGAAACCCAATTGAGTATAAGCTTTTTAAAGTATTTTTAACACAGGTCCAACTGTCAACTTCAGGTTTTTGTTTATTTTCATTGAACGATATTTTAGGAGAGATTCCTCCGAGAAGAGATGGCTTTTGAAAAGTCTGCGACGAATATAAGATATCGATTAGCAGCTTTTTGGCAGCTAAGTAAACTTAAGAACTACAATGTAGTGAAATTCGAAATTTTAACATTCATTCCTTGTCGCGGATT]




>consensus_6860#0
GTGAGAACCAACTGACCGCAGACTAACATCACCTAAAATAGAATTTTGATGCAACTTTAG
TCTCCATTCTTGGCGTAGATGCATTAGTGCTTTATGGAAGGAGTTATGAGTATTATCAAA
TTGAGGGGGAACTAATGAATTCGATCGTCGAACTCTGGCATCAATCAATTCACTATGTCT
ACGACGGAGACGCTCAGCACCTTTCATTAAGATATCAGCGGCTGCAGCGATAGATCGTTT
TTTTCCAGATAGGTAAAGAGAAAGGTTAGTTTCTTGCGAATCATCAGCAACAGGATTAAT
GGCCAGATATTTTCCTTCTTTGATGATAGAAAGAACGTCAACCAAAGCGTTGATCTCAAT
CAATGTAGTACGTAGGCTCTCTTTAACATTCTCCCATATTTTTGGTGTGAAGTTCTTTAG
GAAAGATTCGGACTCTTTATTCTGAGAACAATTATCACCATAACTGCTGCTCTCAGAAAA
GTCGATGTGATTAATAATCCTCTGGAAGTTTGCAGCTGGAGTTAGTGGTTTTTCAAGAAT
TTCATGACCATCCAAGAGTATTTCACGGATATCATATTCAGAGAGCGCTTCAATAGGGAT
CGGATGTTGGGGATAAGGGACAGGCATTGTTTCGATGATTATCTTCCACGGGGAAACCCA
ATTGAGTATAAGCTTTTTAAAGTATTTTTAACACAGGTCCAACTGTCAACTTCAGGTTTT
TGTTTATTTTCATTGAACGATATTTTAGGAGAGATTCCTCCGAGAAGAGATGGCTTTTGA
AAAGTCTGCGACGAATATAAGATATCGATTAGCAGCTTTTTGGCAGCTAAGTAAACTTAA
GAACTACAATGTAGTGAAATTCGAAATTTTAACATTCATTCCTTGTCGCGGATT

consensusID : consensus_6860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 507
fasta sequence

                              [GTCTACGACGGAGACGCTCAGCACCTTTCATTAAGATATCAGCGCCTGCAGCGATAGACTATTCGTTTCNAAATAAATAAGGGAAGAATTTGATTAAACTAACTCGTTTTTTCCCAGATAGGTAAAGAGAAAGGTTAGTTTCTTGCGAATCATCAGCAACAGGATTAATGGCCAGATATTTTCCTTCTTTGATGATAGAAAGAACGTCAACCAAAGCGTTGATCTCAATCAATGTAGTACTAAAAACAATGAGATATACTTGATACGATATACCGTAGGGTCTCTTTAACATTCTCCCATATTTTTGGTGTGAAGTTCTTCAGGAAAGATTCGGACTCTTTATTCTGAGAACAATTATCACCATAACTGCTGCTCTCAGAAAAGTCGATGTGATTAATAATCCTCTGGAAGTTTGCAGCTGGAGTTAGTGGTCTGATTATTTTCAATTAATGGATACACTAACATACTTTTCAAGATATTTCATGACCACTACCTAAAGTATATCAC]

[-] EMBL CD060887             [GTCTACGACGGAGACGCTCAGCACCTTTCATTAAGATATCAGCGCCTGCAGCGATAGACTATTCGTTTCNAAATAAATAAGGGAAGAATTTGATTAAACTAACTCGTTTTTTCCCAGATAGGTAAAGAGAAAGGTTAGTTTCTTGCGAATCATCAGCAACAGGATTAATGGCCAGATATTTTCCTTCTTTGATGATAGAAAGAACGTCAACCAAAGCGTTGATCTCAATCAATGTAGTACTAAAAACAATGAGATATACTTGATACGATATACCGTAGGGTCTCTTTAACATTCTCCCATATTTTTGGTGTGAAGTTCTTCAGGAAAGATTCGGACTCTTTATTCTGAGAACAATTATCACCATAACTGCTGCTCTCAGAAAAGTCGATGTGATTAATAATCCTCTGGAAGTTTGCAGCTGGAGTTAGTGGTCTGATTATTTTCAATTAATGGATACACTAACATACTTTTCAAGATATTTCATGACCACTACCTAAAGTATATCAC]




>consensus_6860#1
GTCTACGACGGAGACGCTCAGCACCTTTCATTAAGATATCAGCGCCTGCAGCGATAGACT
ATTCGTTTCNAAATAAATAAGGGAAGAATTTGATTAAACTAACTCGTTTTTTCCCAGATA
GGTAAAGAGAAAGGTTAGTTTCTTGCGAATCATCAGCAACAGGATTAATGGCCAGATATT
TTCCTTCTTTGATGATAGAAAGAACGTCAACCAAAGCGTTGATCTCAATCAATGTAGTAC
TAAAAACAATGAGATATACTTGATACGATATACCGTAGGGTCTCTTTAACATTCTCCCAT
ATTTTTGGTGTGAAGTTCTTCAGGAAAGATTCGGACTCTTTATTCTGAGAACAATTATCA
CCATAACTGCTGCTCTCAGAAAAGTCGATGTGATTAATAATCCTCTGGAAGTTTGCAGCT
GGAGTTAGTGGTCTGATTATTTTCAATTAATGGATACACTAACATACTTTTCAAGATATT
TCATGACCACTACCTAAAGTATATCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6860#0      GTGAGAACCAACTGACCGCAGACTAACATCACCTAAAATAGAATTTTGATGCAACTTTAG 60
consensus_6860#1      ------------------------------------------------------------
                                                                                  

consensus_6860#0      TCTCCATTCTTGGCGTAGATGCATTAGTGCTTTATGGAAGGAGTTATGAGTATTATCAAA 120
consensus_6860#1      ------------------------------------------------------------
                                                                                  

consensus_6860#0      TTGAGGGGGAACTAATGAATTCGATCGTCGAACTCTGGCATCAATCAATTCACTATGTCT 180
consensus_6860#1      ----------GTCTACGACGGAGACGCTCAGCACCTTTCATTAAGATAT---CAGCGCCT 47
                                    * **    **   **     **  *** **   **   *   * **

consensus_6860#0      ACGACGGAGACGCTCAGCACCTTTCATTAAGATATCAGCGGCTGCAGCGA---TAGATCG 237
consensus_6860#1      GCAGCG-ATAGACTATTCGTTTCNAAATAAATAAGGGAAGAATTTGATTAAACTAACTCG 106
                       *  ** * *  **   *   *   * ***   *     *  *      *   **  ***

consensus_6860#0      TTTTTTTCCAGATAGGTAAAGAGAAAGGTTAGTTTCTTGCGAATCATCAGCAACAGGATT 297
consensus_6860#1      TTTTTTCCCAGATAGGTAAAGAGAAAGGTTAGTTTCTTGCGAATCATCAGCAACAGGATT 166
                      ****** *****************************************************

consensus_6860#0      AATGGCCAGATATTTTCCTTCTTTGATGATAGAAAGAACGTCAACCAAAGCGTTGATCTC 357
consensus_6860#1      AATGGCCAGATATTTTCCTTCTTTGATGATAGAAAGAACGTCAACCAAAGCGTTGATCTC 226
                      ************************************************************

consensus_6860#0      AATCAATGTAGTAC----------------------------------GTAGGCTCTCTT 383
consensus_6860#1      AATCAATGTAGTACTAAAAACAATGAGATATACTTGATACGATATACCGTAGGGTCTCTT 286
                      **************                                  ***** ******

consensus_6860#0      TAACATTCTCCCATATTTTTGGTGTGAAGTTCTTTAGGAAAGATTCGGACTCTTTATTCT 443
consensus_6860#1      TAACATTCTCCCATATTTTTGGTGTGAAGTTCTTCAGGAAAGATTCGGACTCTTTATTCT 346
                      ********************************** *************************

consensus_6860#0      GAGAACAATTATCACCATAACTGCTGCTCTCAGAAAAGTCGATGTGATTAATAATCCTCT 503
consensus_6860#1      GAGAACAATTATCACCATAACTGCTGCTCTCAGAAAAGTCGATGTGATTAATAATCCTCT 406
                      ************************************************************

consensus_6860#0      GGAAGTTTGCAGCTGGAGTTAGTGGTTTTTCAAGAAT---TTCATGACCATCCAAGAGTA 560
consensus_6860#1      GGAAGTTTGCAGCTGGAGTTAGTGGTCTGATTATTTTCAATTAATGGATACACTAACATA 466
                      ************************** *    *   *   ** ***   *  * *   **

consensus_6860#0      TTTCACGGATATCATATTCAGAGAGCGCTTCAATAGGGATCGGATGTTGGGGATAAGGGA 620
consensus_6860#1      CTTTTCAAG----ATATTTCATGACCACTACCTAAAGTATATCAC--------------- 507
                       **  *       *****    ** * ** *   * * **   *                

consensus_6860#0      CAGGCATTGTTTCGATGATTATCTTCCACGGGGAAACCCAATTGAGTATAAGCTTTTTAA 680
consensus_6860#1      ------------------------------------------------------------
                                                                                  

consensus_6860#0      AGTATTTTTAACACAGGTCCAACTGTCAACTTCAGGTTTTTGTTTATTTTCATTGAACGA 740
consensus_6860#1      ------------------------------------------------------------
                                                                                  

consensus_6860#0      TATTTTAGGAGAGATTCCTCCGAGAAGAGATGGCTTTTGAAAAGTCTGCGACGAATATAA 800
consensus_6860#1      ------------------------------------------------------------
                                                                                  

consensus_6860#0      GATATCGATTAGCAGCTTTTTGGCAGCTAAGTAAACTTAAGAACTACAATGTAGTGAAAT 860
consensus_6860#1      ------------------------------------------------------------
                                                                                  

consensus_6860#0      TCGAAATTTTAACATTCATTCCTTGTCGCGGATT 894
consensus_6860#1      ----------------------------------