These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence [TTTGTGAGTGTATATGAATTAGAGCCAGCATATGGGGGTAATGATCTGGGGAAGTTCATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACGGGGGGGCATACAGGTTGAGAAAAAGATGTATGATTATTGAGAGTTAAAGGATGTTGAAAGGTATTTGAGGAATACGAATGGTAAGGTAAATTGCTGGCCGGATGCGATTCTAAGTTATTTGAAGTATGAACTCGTTTCCTTTCGGTAGGTGGTTCATTAACACCTAGAAAATCAGCAATAGCAGATAGTCGTCTTCCAGTTGAGTTGTGGAAATGGGAGTTCGCCGCTGAACCCTGGTTAACTTCACCTCTCATTCCACGCCTGAAATATCTCGGGGTTTTTATCCAGCTCTGCTTTTGAGCTTTTTTAAGTTCACAGCGCTTTGAAAATATGGCGTACGCGTCGAATATTTTTTCATCATTGGTAAGGTTATCTGATGCTGGTTGATGCATTATATTCTGTGGTTCATATGGGTTAATAAGTGACTTTAAAGGAGGATTGTTTTGCGCATGCCGATTAAATGACGTTGAAACGACTTGATTTTTATGAAACTCAACACCTCTTTGAGGTGAATTCGGGATTTTATTCAGTCCTTCTCTGTTTATGGGTACGGGAGCATAAACAGGCCT] [-] EMBL CD078072 [TTTGTGAGTGTATATGAATTAGAGCCAGCATATGGGGGTAATGATCTGGGGAAGTTCATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACGGGGGGGCATACAGGTTGAGAAAAAGATGTATGATTATTGAGAGTTAAAGGATGTTGAAAGGTATTTGAGGAATACGAATGGTAAGGTAAATTGCTGGCCGGATGCGATTCTAAGTTATTTGAAGTATGAACTCGTTTCCTTTCGGTAGGTGGTTCATTAACACCTAGAAAATCAGCAATAGCAGATAGTCGTCTTCCAGTTGAGTTGTGGAAATGGGAGTTCGCC ] [+] EMBL CD156604 [ GTAAATTGCTGGCCGGATGCGATTCTAAGTTATTTGAAGTATGAACTCGTTTCCTTTCGGTAGGTGGTTCATTAACACCTAGAAAATCAGCAATACCAGATAGTCGTCTTCCAGTTGAGTTGTGGAAATGGGAGTTCGTGGCTGAACCCTGGTTAACTTCACCTCTCATTCCACGCCTGAAATATCTCGGGGTTTTTATCCAGCTCTGCTTTTGAGCTTTTTTAAGTTCACAGCGCTTTGAAAATATGGCGTACGCGTCGAATATTTTTTCATCATTGGTAAGGTTATCTG ] [-] EMBL CD165338 [ AACTTCACCTCTCATTCCACGCCTGAAATATCTCGGGGTTTTTATCCAGCTCTGCTTTTGAGCTTTTTTAAGTTCACAGCGTTTTGAAAATATGGTGTACGCGTCGAATATTTTTTCATCATTGGTAAGGTTATCTGATGCTGGTTGATGCATTATATTCTGTGGTTCATATGGGTTAATAAGTGACTTTAAAGGAGGATTGTTTTGCGCATGCCGATTAAATGACGTTGAAACGACTTGATTTTTATGAAACTCAACACCTCTTTGAGGTGAATTCGGGATTTTATTCAGTCCTTCTCTGTTTATGGGTACGGGAGCATAAACAGGCCT] consensusID : consensus_6862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [AACCTGTATGCCCGCCCGTGTATGCTAATCAGCCTACTAACCATAAAATCCCTTCATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACTCCCTTTAATGCCACTCAATCTAATGAACTTCCCCAGATCATTACCCCCATATGCTGCTCCTAATTCATATACACTCACAAACCCACATACCAATAGTTCTTTTTGGCCTGGTCATCTCAATCTTGATTCATCTGTTCCAAGTGCCTCACAGTCATTACAGTACTATAATTCTTCGTTTCTTCCTACATTCAAGTACTTCATTTAATTGGATTTATTGGGGCCGTTTTCCAGGGTCCTTGGACGGTTTAAAAACTTTGTTTTAACCGGCCTTAAAAAGTTCCGCCCTGGTTTTAGAATGGAAATTTT] [+] EMBL CD077754 [AACCTGTATGCCCGCCCGTGTATGCTAATCAGCCTACTAACCATAAAATCCCTTCATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACTCCCTTTAATGCCACTCAATCTAATGAACTTCCCCAGATCATTACCCCCATATGCTGCTCCTAATTCATATACACTCACAAACCCACATACCAATAGTTCTTTTTGGCCTGGTCATCTCAATCTTGATTCATCTGTTCCAAGTGCCTCACAGTCATTACAGTACTATAATTCTTCGTTTCTTCCTACATTCAAGTACTTCATTTAATTGGATTTATTGGGGCCGTTTTCCAGGGTCCTTGGACGGTTTAAAAACTTTGTTTTAACCGGCCTTAAAAAGTTCCGCCCTGGTTTTAGAATGGAAATTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6862#0 ----TTTGTGAGTGTATATGAATTAGAGCCAGCATATGGGGGTAATGATCTGGGGAAGTT 56 consensus_6862#1 AACCTGTATGCCCGCCCGTGTATGCTAATCAGCCTACTAACCATAAAATCCC------TT 54 * * ** * ** ** * **** ** * *** ** consensus_6862#0 CATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACGGG 116 consensus_6862#1 CATTAGATTGAGTGGAATTGAAGGGATTTTATGGTTAGTAGACTGATTAGCATACACTCC 114 ********************************************************* consensus_6862#0 GGGGCATACAGGTTGAGAAAAAGATGTATGATTATTGAGAGTTAAAGGATGTTGAAAGGT 176 consensus_6862#1 CTTTAATGCCACTCAATCTAATGAACTTCCCCAGATCATTACCCCCATATGCTGCTCC-T 173 ** * * * ** ** * * * *** ** * consensus_6862#0 ATTTGAGGAATACGAATGGTAAGGTAAATTGCTGGCCGGATGCGATTCTAAGTTATTTGA 236 consensus_6862#1 AATTCATATACACTCACAAACCCACATACCAATAGTTCTTTTTGGCCT--GGTCATCTCA 231 * ** * * ** * * * * * * * ** ** * * consensus_6862#0 AGTATGAACTCGTTTCCTTTCGGTAGGTGGTTCATTAACACCTAGAAAATCAGCAATAGC 296 consensus_6862#1 A-TCTTGATTCATCTGTTCC----AAGTGCCTCACAGTCAT-TACAGTACTATAATTCTT 285 * * * * ** * * * * *** *** ** ** * * * * * consensus_6862#0 AGATAGTCGTCTTCCAGTTGAGTTGTGGAAATGGGAGTTCGCCGCTGAACCCTGGTTAAC 356 consensus_6862#1 CGTT--TCTTCCTACATTCAAGTACTTCATTTAATTG------GATTTATTGGGGCCGTT 337 * * ** ** * ** * *** * * * * * * * ** consensus_6862#0 TTCACCTCTCATTCCACGCCTGAAATATCTCGGGGTTTTTATCCAGCTCTGCTTTTGAGC 416 consensus_6862#1 TTCCAGGGTCCTTGGACGGTTTAAAAACTTTG----TTTTAACCGGCCTTAAA---AAGT 390 *** ** ** *** * *** * * * ***** ** ** * ** consensus_6862#0 TTTTTTAAGTTCACAGCGCTTTGAAAATATGGCGTACGCGTCGAATATTTTTTCATCATT 476 consensus_6862#1 TCCGCCCTGGTTTTAGAA---TGGAAATTTT----------------------------- 418 * * * ** ** **** * consensus_6862#0 GGTAAGGTTATCTGATGCTGGTTGATGCATTATATTCTGTGGTTCATATGGGTTAATAAG 536 consensus_6862#1 ------------------------------------------------------------ consensus_6862#0 TGACTTTAAAGGAGGATTGTTTTGCGCATGCCGATTAAATGACGTTGAAACGACTTGATT 596 consensus_6862#1 ------------------------------------------------------------ consensus_6862#0 TTTATGAAACTCAACACCTCTTTGAGGTGAATTCGGGATTTTATTCAGTCCTTCTCTGTT 656 consensus_6862#1 ------------------------------------------------------------ consensus_6862#0 TATGGGTACGGGAGCATAAACAGGCCT 683 consensus_6862#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||