These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6872#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 882 fasta sequence [TATCAAGTAATTTAAACATTGGGCCTGAAGAATATATAAAAGCGGAGGAATGTAATTATGATAACACTATGGATGACAGTCTAATAGATAATAAGTTAGGAATTTTGCGAGATAATCATTCGTTGTATTCGGAGGACAGTTTTAAACATAAATATAACTCTAATGATGGTCATATTGTTAGTGCTTATAACCGTCATAATGGTAGCACAACTTTTAAGCGACGTCAAATCTCATCAGTACAAGATTCTGAAGAGGGAGTGAAACCGTCGTGTGCTTTTTGCAACAAGACGTTTTCAACAAGAGCTGGACGGGACCGCCACATTAAAAGCATTCACAAAAGAATAAAATATCCATGTATTCCATGTGACAGAAAGTTTACAACCAAATTCCATTTAATTGAACACAAGAAAGTTATTCACCAAGGTATTAATCTTTCATGTGATAAATGTGATAGGAACTTCACTACGAAATCTCAGCTAAATAGACACATAAAATCAGCTCATGAAGGGATAAAATATCCATGTAATCAATGTAACAAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAACATCCTTGTAATCAATGTGATAGGAAGTTTGGAACTAAATCCAAATTAAATGACCACATAAAAGTTGCTCACGAAGGTGTAACTTTTCCATGCGATGAATGTGGTAAAATATTCTCTTCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATCAGTGTGACAGATTGTATACATCTAGATTTCATTTANATGAACACTTGAGAGCTAATCATGAAGGTGTAAAATTTACCTGCGAACATATGAGGAGATACTCTA] [-] EMBL CD184978 [TATCAAGTAATTTAAACATTGGGCCTGAAGAATATATAAAAGCGGAGGAATGTAATTATGATAACACTATGGATGACAGTCTAATAGATAATAAGTTAGGAATTTTGCGAGATAATCATTCGTTGTATTCGGAGGACAGTTTTAAACATAAATATAACTCTAATGATGGTCATATTGTTAGTGCTTATAACCGTCATAATGGTAGCACAACTTTTAAGCGACGTCAAATCTCATCAGTACAAGATTCTGAAGAGGGAGTGAAACCGTCGTGTGCTTTTTGCAACAAGACGTTTTCAACAAGAGCTGGACGGGACCGCCACATTAAAAGCATTCACAAAAGAATAAAATATCCATGTATTCCATGTGACAGAAAGTTTACAACCAAATTCCATTTAATTGAACACAAGAAAGTTATTCACCAAGGTATTAATCTTTCATGTGATAAATGTGATAGGAACTTCA ] [+] EMBL CD079102 [ CTCATCAGTACAAGATTCTGAAGAGGGAGTGAAACCGTCGTGTGCTTTTTGCAACAAGACGTTTTCAACAAGAGCTGGACGGGACCGCCACATTAAAAGCATTCACAAAAGAATAAAATATCCATGTATTCAATGTGACAGAAAGTTTACAACCAAATTCCATTTAATTGAACACAAGAAAGTTATTCACCAAGGTATTAATCTTTCATGTGATAAATGTGATAGGAACTTCACTACGAAATCTCAGCTAAATAGACACATAAAATCAGCTCATGAAGGGATAAAATATCCATGTAATCAATGTAACAAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAACATCCTTGTAATCAATGTGATAGGAAGTTTGGAACTAAATCCAAATTAAATGACCACATAAAAGTTGCTCACGAAGGTGTAACTTTTCCATGCGATGAATGTGGTAAAATATTCTCTTCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATCAGTGTGACAGATTGTATACATCTAGATTTCATTTANATGAACACTTGAGAGCTAATCATGA ] [-] EMBL CD061088 [ TAAAATACCCATGTAATCAATGTAACAAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAACATCCTTGTAATCAATGTGATAGGAAGTTTGGAACTAAATCCAAATTAAATGACCACATAAAAGTTGCTCACGAAGGTGTAACTTTTCCATGCGATGAATGTGGTAAAATATTCTCTTCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATCAGTGTGACAGATTGTATACATCTAGATTTCATTTAAATGAACACTTGAGAGCTAATCATGAAGGTGTAAAATTTACCTGCGAACATATGAGGAGATACTCTA] consensusID : consensus_6872#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [ACGGCCCCCTGATATGTTCGCAGGCATGAAGGGATAAAATACCCATGTAATCAATGTAACAAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAACATCCTTGTAATCAATGTGATAGGAAGTTCGGAACTAAATCCAAATTAAATGACCACATAAAAGTTGCTCACGAAAGTGTAACTTTTTCATGCGATGAATGTGGTAAAATATTCTCTTCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATCAGTGTGACAGATTGTATACATCTAGATTTCATTTAAATGAACACTTGAGAGCTAATCATGAAGGT] [+] EMBL CD060980 [ACGGCCCCCTGATATGTTCGCAGGCATGAAGGGATAAAATACCCATGTAATCAATGTAACAAAAAGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAACATCCTTGTAATCAATGTGATAGGAAGTTCGGAACTAAATCCAAATTAAATGACCACATAAAAGTTGCTCACGAAAGTGTAACTTTTTCATGCGATGAATGTGGTAAAATATTCTCTTCGAATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATCAGTGTGACAGATTGTATACATCTAGATTTCATTTAAATGAACACTTGAGAGCTAATCATGAAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6872#0 TATCAAGTAATTTAAACATTGGGCCTGAAGAATATATAAAAGCGGAGGAATGTAATTATG 60 consensus_6872#1 ------------------------------------------------------------ consensus_6872#0 ATAACACTATGGATGACAGTCTAATAGATAATAAGTTAGGAATTTTGCGAGATAATCATT 120 consensus_6872#1 ------------------------------------------------------------ consensus_6872#0 CGTTGTATTCGGAGGACAGTTTTAAACATAAATATAACTCTAATGATGGTCATATTGTTA 180 consensus_6872#1 ------------------------------------------------------------ consensus_6872#0 GTGCTTATAACCGTCATAATGGTAGCACAACTTTTAAGCGACGTCAAATCTCATCAGTAC 240 consensus_6872#1 ------------------------------------------------------------ consensus_6872#0 AAGATTCTGAAGAGGGAGTGAAACCGTCGTGTGCTTTTTGCAACAAGACGTTTTCAACAA 300 consensus_6872#1 ------------------------------------------------------------ consensus_6872#0 GAGCTGGACGGGACCGCCACATTAAAAGCATTCACAAAAGAATAAAATATCCATGTATTC 360 consensus_6872#1 ------------------------------------------------------------ consensus_6872#0 CATGTGACAGAAAGTTTACAACCAAATTCCATTTAATTGAACACAAGAAAGTTATTCACC 420 consensus_6872#1 ------------------------------------------------------------ consensus_6872#0 AAGGTATTAATCTTTCATGTGATAAATGTGATAGGAACTTCACTACGAAATCTCAGCTAA 480 consensus_6872#1 -------------------------------------------------ACGGCCCCCTG 11 * * * consensus_6872#0 ATAGACACATAAAATCAGCTCATGAAGGGATAAAATATCCATGTAATCAATGTAACAAAA 540 consensus_6872#1 ATATGTTCGCAGG-------CATGAAGGGATAAAATACCCATGTAATCAATGTAACAAAA 64 *** * * ***************** ********************** consensus_6872#0 AGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAAC 600 consensus_6872#1 AGCTTTCTACGAAATATGATTTATATGTACACAAAAAAGTTATTCATGAAGGAATAAAAC 124 ************************************************************ consensus_6872#0 ATCCTTGTAATCAATGTGATAGGAAGTTTGGAACTAAATCCAAATTAAATGACCACATAA 660 consensus_6872#1 ATCCTTGTAATCAATGTGATAGGAAGTTCGGAACTAAATCCAAATTAAATGACCACATAA 184 **************************** ******************************* consensus_6872#0 AAGTTGCTCACGAAGGTGTAACTTTTCCATGCGATGAATGTGGTAAAATATTCTCTTCGA 720 consensus_6872#1 AAGTTGCTCACGAAAGTGTAACTTTTTCATGCGATGAATGTGGTAAAATATTCTCTTCGA 244 ************** *********** ********************************* consensus_6872#0 ATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATC 780 consensus_6872#1 ATGGCGCTCTTTGCAGACATCTACAATCAGTTCATCAAGGAATAAAATATCCATGTAATC 304 ************************************************************ consensus_6872#0 AGTGTGACAGATTGTATACATCTAGATTTCATTTANATGAACACTTGAGAGCTAATCATG 840 consensus_6872#1 AGTGTGACAGATTGTATACATCTAGATTTCATTTAAATGAACACTTGAGAGCTAATCATG 364 *********************************** ************************ consensus_6872#0 AAGGTGTAAAATTTACCTGCGAACATATGAGGAGATACTCTA 882 consensus_6872#1 AAGGT------------------------------------- 369 ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||