These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6877#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 726 fasta sequence [GCTATGAAAGTACGCAGCTCGAGACCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGAGGAACTGGCGCGTTTCTATCCACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGATCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCACTTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTTGACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAGTGGCAACCTTATGCAGCACTTGCGGCGGCATCTTTTATGAAGTCTATAATTCTACAACTGCCTCTGATTCCAATTAACGAAGATTGAAGGAAGAGCTTACTAGAAAGTTCTTATATGCTTGACATAAAAACTACGTTAATAATCTAGGTTAATTCATCATACATCACCTCTTGTACAGTTCGATATCTCCCACAGACATCAGAATGATTGCAACATACATAACTTTCCATGCAACTTTATTTTTCATC] [+] EMBL CD078210 [GCTATGAAAGTACGCAGCTCGAGACCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGAGGAACTGGC ] [+] EMBL CD136768 [ CTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGAGGAACTGGCGCGTTTCTATCCACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGATCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCACTTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTTGACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAGTGGCAACCTTATGCAGCACTTGCGG ] [+] EMBL CD169224 [ AGGAACTGGCGCGTTTCTATCCACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGATCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCACTTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTTGACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAGTGGCAACCTTATGCAGCACTTGCGGCGGCATCTTTTATGAAGTCTATAATTCTACAACTGCCTCTGATTCCAATTAACGAAGATTGAAGGAAGAGCTTACTAGAAAGTTCTTATATGCTTGACATAAAAACTACGTTAATAATCTAGGTTAATTCATCATACATCACCTCTTGTACAGTTCGATATCTCCCACAGACATCAGAATGATTGCAACATACATAACTTTCCATGCAACTTTATTTTTCATC] consensusID : consensus_6877#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [ACGAATTTGAGAAACATTCTCGCCTGGGTGATATTGTAGTGAGTGCTGTGGCACGTTCAAGTGGATTGCATTCTTCAGCTATGAACAATCATACAAATCATTCTGTATCAAATGGTGTAGGAGACTCTATCTACATTTACTGTGATCGATTGATTGAACCTCCAGAAGATGCAGTTGATATGAAAACACCAAGATTTGTCCTAAGAAAGTACGCTGCTCGAGATCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAGTAAGTCCCAAAAGTGTATTTATTAGATAATAGTATATGATGTNTGGTGAGC] [-] EMBL CD128895 [ACGAATTTGAGAAACATTCTCGCCTGGGTGATATTGTAGTGAGTGCTGTGGCACGTTCAAGTGGATTGCATTCTTCAGCTATGAACAATCATACAAATCATTCTGTATCAAATGGTGTAGGAGACTCTATCTACATTTACTGTGATCGATTGATTGAACCTCCAGAAGATGCAGTTGATATGAAAACACCAAGATTTGTCCTAAGAAAGTACGCTGCTCGAGATCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAGTAAGTCCCAAAAGTGTATTTATTAGATAATAGTATATGATGTNTGGTGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6877#0 GCTATGAAAGTACGCAGCTCGAGACCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGA 60 consensus_6877#1 ------------------------------------------------------------ consensus_6877#0 TCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGAC 120 consensus_6877#1 ------------------------------------------------------------ consensus_6877#0 TGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAA 180 consensus_6877#1 --------------------------------------------------------ACGA 4 ** * consensus_6877#0 ACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGA 240 consensus_6877#1 ATTTGAG--AAACATTCTCGCCTGGGTGATATT--GTAGTGAGTGCTGTGGCACGTTCAA 60 * * * ** ** ** * ** * *** * ** * * * * consensus_6877#0 GGAACTGGCGCGTTTCTATCC--ACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGA 298 consensus_6877#1 GTGGATTGCATTCTTCAGCTATGAACAATCATACAAATCAT---TCTGTATCAAATGGTG 117 * * ** *** * ** * *** * * * ** * **** consensus_6877#0 TCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCAC 358 consensus_6877#1 TAGGAGACTCTATCTACATTTACTG-TGATCGATTGATTGAACCTCCAGAAGA------- 169 * * * * * *** ** ** * *** *** * * **** consensus_6877#0 TTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTT 418 consensus_6877#1 -TGCAGT----TGATA-TGAAAAC-ACCAAGATTTG-------TCCTAAGAAAGTACGCT 215 * * ** **** **** ** * **** **** * * **** * * consensus_6877#0 GACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAG 478 consensus_6877#1 G---CTCGAGATCCGACTT------TAGTGAACTGT-------GTAGAGAAAGTTCTTGA 259 * ** ** * *** *** * ***** ** ** * consensus_6877#0 TGGCAACCTTATGCAGCACTTGCGGCGGCATCTTTTATGAAGTCTATAATTCTACAACTG 538 consensus_6877#1 TCGC-----TTCGAAGCAGCTCCAGAAAAATGTGA-ATGGGATC-AGATTTTAAAGACTG 312 * ** * * **** * * * ** * *** ** * * ** * **** consensus_6877#0 CCTCTGATTCCAATTAACGAAGATTGAAGGAAGAGCTTACTAGAAAGTTCTTATA--TGC 596 consensus_6877#1 CTT-TGACTGTACTAGGCGGGGA-----GGATGATCCCATTGATTTTGCCCGACCGCCGC 366 * * *** * * * ** ** *** ** * * * * * ** consensus_6877#0 TTGACATAAAAACTACGTTAATAATCTAGGTTAATTCATCATACATCACCTCTTGTACAG 656 consensus_6877#1 CTGATACAGA---CAAACTAA-AACTTAAAGTAAGTCCCAAAAGTGTATTTATTAGATAA 422 *** * * * * *** ** ** *** ** * * * * ** * * consensus_6877#0 TTCGATATCTCCCACAGACATCAGAATGATTGCAACATACATAACTTTCCATGCAACTTT 716 consensus_6877#1 TAGTATATGATGTNTGGTGAGC-------------------------------------- 444 * **** * * * consensus_6877#0 ATTTTTCATC 726 consensus_6877#1 ---------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||