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Schistosoma mansoni
cluster # 6877 cluster # 6877       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6877#0 length = 726 sequences # 3  
consensus_6877#1 length = 444 sequences # 1  

consensusID : consensus_6877#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 726
fasta sequence
                              [GCTATGAAAGTACGCAGCTCGAGACCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGAGGAACTGGCGCGTTTCTATCCACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGATCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCACTTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTTGACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAGTGGCAACCTTATGCAGCACTTGCGGCGGCATCTTTTATGAAGTCTATAATTCTACAACTGCCTCTGATTCCAATTAACGAAGATTGAAGGAAGAGCTTACTAGAAAGTTCTTATATGCTTGACATAAAAACTACGTTAATAATCTAGGTTAATTCATCATACATCACCTCTTGTACAGTTCGATATCTCCCACAGACATCAGAATGATTGCAACATACATAACTTTCCATGCAACTTTATTTTTCATC]

[+] EMBL CD078210             [GCTATGAAAGTACGCAGCTCGAGACCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGAGGAACTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD136768             [                                                       CTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGAGGAACTGGCGCGTTTCTATCCACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGATCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCACTTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTTGACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAGTGGCAACCTTATGCAGCACTTGCGG                                                                                                                                                                                                                               ]
[+] EMBL CD169224             [                                                                                                                                                                                                                                               AGGAACTGGCGCGTTTCTATCCACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGATCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCACTTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTTGACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAGTGGCAACCTTATGCAGCACTTGCGGCGGCATCTTTTATGAAGTCTATAATTCTACAACTGCCTCTGATTCCAATTAACGAAGATTGAAGGAAGAGCTTACTAGAAAGTTCTTATATGCTTGACATAAAAACTACGTTAATAATCTAGGTTAATTCATCATACATCACCTCTTGTACAGTTCGATATCTCCCACAGACATCAGAATGATTGCAACATACATAACTTTCCATGCAACTTTATTTTTCATC]


>consensus_6877#0 GCTATGAAAGTACGCAGCTCGAGACCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGA TCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGAC TGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAA ACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGA GGAACTGGCGCGTTTCTATCCACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGATC TGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCACTT ACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTTGA CTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAGTG GCAACCTTATGCAGCACTTGCGGCGGCATCTTTTATGAAGTCTATAATTCTACAACTGCC TCTGATTCCAATTAACGAAGATTGAAGGAAGAGCTTACTAGAAAGTTCTTATATGCTTGA CATAAAAACTACGTTAATAATCTAGGTTAATTCATCATACATCACCTCTTGTACAGTTCG ATATCTCCCACAGACATCAGAATGATTGCAACATACATAACTTTCCATGCAACTTTATTT TTCATC



consensusID : consensus_6877#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 444
fasta sequence
                              [ACGAATTTGAGAAACATTCTCGCCTGGGTGATATTGTAGTGAGTGCTGTGGCACGTTCAAGTGGATTGCATTCTTCAGCTATGAACAATCATACAAATCATTCTGTATCAAATGGTGTAGGAGACTCTATCTACATTTACTGTGATCGATTGATTGAACCTCCAGAAGATGCAGTTGATATGAAAACACCAAGATTTGTCCTAAGAAAGTACGCTGCTCGAGATCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAGTAAGTCCCAAAAGTGTATTTATTAGATAATAGTATATGATGTNTGGTGAGC]

[-] EMBL CD128895             [ACGAATTTGAGAAACATTCTCGCCTGGGTGATATTGTAGTGAGTGCTGTGGCACGTTCAAGTGGATTGCATTCTTCAGCTATGAACAATCATACAAATCATTCTGTATCAAATGGTGTAGGAGACTCTATCTACATTTACTGTGATCGATTGATTGAACCTCCAGAAGATGCAGTTGATATGAAAACACCAAGATTTGTCCTAAGAAAGTACGCTGCTCGAGATCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAAACTAAAACTTAAAGTAAGTCCCAAAAGTGTATTTATTAGATAATAGTATATGATGTNTGGTGAGC]


>consensus_6877#1 ACGAATTTGAGAAACATTCTCGCCTGGGTGATATTGTAGTGAGTGCTGTGGCACGTTCAA GTGGATTGCATTCTTCAGCTATGAACAATCATACAAATCATTCTGTATCAAATGGTGTAG GAGACTCTATCTACATTTACTGTGATCGATTGATTGAACCTCCAGAAGATGCAGTTGATA TGAAAACACCAAGATTTGTCCTAAGAAAGTACGCTGCTCGAGATCCGACTTTAGTGAACT GTGTAGAGAAAGTTCTTGATCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGA TTTTAAAGACTGCTTTGACTGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGAC CGCCGCCTGATACAGACAAACTAAAACTTAAAGTAAGTCCCAAAAGTGTATTTATTAGAT AATAGTATATGATGTNTGGTGAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6877#0      GCTATGAAAGTACGCAGCTCGAGACCCGACTTTAGTGAACTGTGTAGAGAAAGTTCTTGA 60
consensus_6877#1      ------------------------------------------------------------
                                                                                  

consensus_6877#0      TCGCTTCGAAGCAGCTCCAGAAAAATGTGAATGGGATCAGATTTTAAAGACTGCTTTGAC 120
consensus_6877#1      ------------------------------------------------------------
                                                                                  

consensus_6877#0      TGTACTAGGCGGGGAGGATGATCCCATTGATTTTGCCCGACCGCCGCCTGATACAGACAA 180
consensus_6877#1      --------------------------------------------------------ACGA 4
                                                                              ** *

consensus_6877#0      ACTAAAACTTAAAATCAACGAAGGTGTAACATTCGACATCAAGCATCCGGATGTGCCCGA 240
consensus_6877#1      ATTTGAG--AAACATTCTCGCCTGGGTGATATT--GTAGTGAGTGCTGTGGCACGTTCAA 60
                      * *  *    ** **   **   * ** * ***    *   **      *    *  * *

consensus_6877#0      GGAACTGGCGCGTTTCTATCC--ACCAGGCGTACCAGCCGTACGCCTTGGTTGTATGGGA 298
consensus_6877#1      GTGGATTGCATTCTTCAGCTATGAACAATCATACAAATCAT---TCTGTATCAAATGGTG 117
                      *    * **    ***       * **  * *** *  * *    **   *   ****  

consensus_6877#0      TCTGGTAGACCAGTTACGGATAATGACGCATTGATGAGTGACTTTGCTAAAGAACACCAC 358
consensus_6877#1      TAGGAGACTCTATCTACATTTACTG-TGATCGATTGATTGAACCTCCAGAAGA------- 169
                      *  *  *  * *  ***   ** **  *      *** ***   * *  ****       

consensus_6877#0      TTACTGTGTTATGATGCTGAATACGATCAAGTTTTGGAGTCCGTTATGGGAAATGGCCTT 418
consensus_6877#1      -TGCAGT----TGATA-TGAAAAC-ACCAAGATTTG-------TCCTAAGAAAGTACGCT 215
                       * * **    ****  **** ** * **** ****       *  *  ****   *  *

consensus_6877#0      GACTCTTTTATTCTTATCCGTGGAATAGCTGACTATATGGAAGGTAGACAAGGTACACAG 478
consensus_6877#1      G---CTCGAGATCCGACTT------TAGTGAACTGT-------GTAGAGAAAGTTCTTGA 259
                      *   **     **  *         ***   *** *       ***** ** ** *    

consensus_6877#0      TGGCAACCTTATGCAGCACTTGCGGCGGCATCTTTTATGAAGTCTATAATTCTACAACTG 538
consensus_6877#1      TCGC-----TTCGAAGCAGCTCCAGAAAAATGTGA-ATGGGATC-AGATTTTAAAGACTG 312
                      * **     *  * ****  * * *    ** *   ***   ** * * **  *  ****

consensus_6877#0      CCTCTGATTCCAATTAACGAAGATTGAAGGAAGAGCTTACTAGAAAGTTCTTATA--TGC 596
consensus_6877#1      CTT-TGACTGTACTAGGCGGGGA-----GGATGATCCCATTGATTTTGCCCGACCGCCGC 366
                      * * *** *  * *   **  **     *** ** *  * *        *  *     **

consensus_6877#0      TTGACATAAAAACTACGTTAATAATCTAGGTTAATTCATCATACATCACCTCTTGTACAG 656
consensus_6877#1      CTGATACAGA---CAAACTAA-AACTTAAAGTAAGTCCCAAAAGTGTATTTATTAGATAA 422
                       *** * * *    *   *** **  **   *** **   * *    *  * **  * * 

consensus_6877#0      TTCGATATCTCCCACAGACATCAGAATGATTGCAACATACATAACTTTCCATGCAACTTT 716
consensus_6877#1      TAGTATATGATGTNTGGTGAGC-------------------------------------- 444
                      *   ****        *  * *                                      

consensus_6877#0      ATTTTTCATC 726
consensus_6877#1      ----------
                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)