cluster # 6885

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Schistosoma mansoni
cluster # 6885 cluster # 6885 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6885#0 length = 555 sequences # 1

consensus_6885#1 length = 373 sequences # 3

consensusID : consensus_6885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence

                              [CGCGCATCTAGTTGTTGATTACTTTAAATTTAATAAAATTATCAGGGATCAAGACAAAAGAAGCTTGAAGATCGTTCTAATCGTTTAGCCGAAGAGGAAAAATGTAGAATGGCCATCGATCGTGAAGAGGAGAAATTTCAAGCGGAACGAAGAAAGAAAGCTGTTGATAAAGCGAAGCAGCTATTATATTACGAAACGGATCGTTTTCGATTATTACATGTAAATTCGTAGTATAACCTAATAATCCTAATGATAATTATCGTAATATCAAAACTAAAATTTACAAGTGAACTTCTGCAACTCCTAAAATAAATGTGAGAACGTTTTACCAGGTCCCAGTGATTAGTTTGTAATGGAGAAAATCACAAAAAACGAAAGATCGGGTTTTCGTTAACATTTCAACGTTCTTGTGGTTTACATTCAAACGAAACAACGCTATAGATGTTCATATATTAGGCTAAAATATATTCCTTCACGACTACCCTTATATTGATGTAGTAAATTATTAAGTCATGTCTTTATTGCTTTTACGGACTTATCCTANTAATAATGCTA]

[+] EMBL CD078466             [CGCGCATCTAGTTGTTGATTACTTTAAATTTAATAAAATTATCAGGGATCAAGACAAAAGAAGCTTGAAGATCGTTCTAATCGTTTAGCCGAAGAGGAAAAATGTAGAATGGCCATCGATCGTGAAGAGGAGAAATTTCAAGCGGAACGAAGAAAGAAAGCTGTTGATAAAGCGAAGCAGCTATTATATTACGAAACGGATCGTTTTCGATTATTACATGTAAATTCGTAGTATAACCTAATAATCCTAATGATAATTATCGTAATATCAAAACTAAAATTTACAAGTGAACTTCTGCAACTCCTAAAATAAATGTGAGAACGTTTTACCAGGTCCCAGTGATTAGTTTGTAATGGAGAAAATCACAAAAAACGAAAGATCGGGTTTTCGTTAACATTTCAACGTTCTTGTGGTTTACATTCAAACGAAACAACGCTATAGATGTTCATATATTAGGCTAAAATATATTCCTTCACGACTACCCTTATATTGATGTAGTAAATTATTAAGTCATGTCTTTATTGCTTTTACGGACTTATCCTANTAATAATGCTA]




>consensus_6885#0
CGCGCATCTAGTTGTTGATTACTTTAAATTTAATAAAATTATCAGGGATCAAGACAAAAG
AAGCTTGAAGATCGTTCTAATCGTTTAGCCGAAGAGGAAAAATGTAGAATGGCCATCGAT
CGTGAAGAGGAGAAATTTCAAGCGGAACGAAGAAAGAAAGCTGTTGATAAAGCGAAGCAG
CTATTATATTACGAAACGGATCGTTTTCGATTATTACATGTAAATTCGTAGTATAACCTA
ATAATCCTAATGATAATTATCGTAATATCAAAACTAAAATTTACAAGTGAACTTCTGCAA
CTCCTAAAATAAATGTGAGAACGTTTTACCAGGTCCCAGTGATTAGTTTGTAATGGAGAA
AATCACAAAAAACGAAAGATCGGGTTTTCGTTAACATTTCAACGTTCTTGTGGTTTACAT
TCAAACGAAACAACGCTATAGATGTTCATATATTAGGCTAAAATATATTCCTTCACGACT
ACCCTTATATTGATGTAGTAAATTATTAAGTCATGTCTTTATTGCTTTTACGGACTTATC
CTANTAATAATGCTA

consensusID : consensus_6885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 373
fasta sequence

                              [CTCTCACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCTTCAAGCTTCTTTTGTCTTGATCCCAAAAGTGTATTTGTCCAATTTTTTACCATTTCTCTTGATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGTTTCACTCAAATGACTATCCATTTGGTTTCTTAAACGTTTCCATTCTGATTGACTTATCAGTTTCACTCGTCTTACGTCCACAGGTGTATCATTAACAGGATTTTCAAATAAAAATTCTTTCCTGTCTCTCATTTTGGCAATGTGAAGCGGTCCACGTCTAGACGGAAGGTACTTTGTATACTAAAGGAGCATGTAGAGTA]

[+] EMBL CD147375             [CTCTCACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCTTCAAGCTTCTTTTGTCTTGATCCCAAAAGTGTATTTGTCCAATTTTTTACCATTTCTCTTGATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGTTTCACTCAAATGACTATCCATTTGGTTTCTTAAACGTTTCCATTCTGATTGACTTATCAGTTTCACTCGTCTTACGTCCACAGGTGTATCACTAACAGGATTTTCAAATAAAAATTCTTTCCTGTCTCTCATTTTGGCAATGTGAAGCGGTCCACGTCTAGACGGAAGGTACTTTGTATACTANAGGAGCATGTAGAGT ]
[+] EMBL CD147893             [CTCTCACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCTTCAAGCTTCTTTTGTCTTGATCCCAAAAGTGTATTTGTCCAATTTTTTACCATTTCTCTTGATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGTTTCACTCAAATGACTATCCATTTGGTTTCTTAAACGTTTCCATTCTGATTGACTTATCAGTTTCACTCGTCTTACGTCCACAGGTGTATCATTAACAGGATTTTCAAATAAAAATTCTTTCCTGTCTCTCATTTTGGCAATGTGAAGCGGTCCACGTCTAGACGGAAGGTACTTTGTATACTAAAGGAGCATGTAGAGT ]
[-] EMBL CD147452             [ TCTCACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCTTCAAGCTTCTTTTGTCTTGATCCCAAAAGTGTATTTGTCCAATTTTTTACCATTTCTCTTGATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGTTTCACTCAAATGACTATCCATTTGGTTTCTTAAACGTTTCCATTCTGATTGACTTATCAGTTTCACTCGTCTTACGTCCACAGGTGTATCATTAACAGGATTTTCAAATAAAAATTCTTTCCTGTCTCTCATTTTGGCAATGTGAAGCGGTCCACGTCTAGACGGAAGGTACTTTGTATACTAAAGGAGCATGTAGAGTA]




>consensus_6885#1
CTCTCACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCT
TCAAGCTTCTTTTGTCTTGATCCCAAAAGTGTATTTGTCCAATTTTTTACCATTTCTCTT
GATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGTTTCACTC
AAATGACTATCCATTTGGTTTCTTAAACGTTTCCATTCTGATTGACTTATCAGTTTCACT
CGTCTTACGTCCACAGGTGTATCATTAACAGGATTTTCAAATAAAAATTCTTTCCTGTCT
CTCATTTTGGCAATGTGAAGCGGTCCACGTCTAGACGGAAGGTACTTTGTATACTAAAGG
AGCATGTAGAGTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6885#0      CGCGCATCTAGTTGTTGATTACTTTAAATTTAATAAAATTATCAGGGATCAAGACAAAAG 60
consensus_6885#1      -------------------------------------------------------CTCTC 5
                                                                                  

consensus_6885#0      AAGCTTGAAGATCGTTCTAATCGTTTAGCCGAAGAGGAAAAATGTAGAATGGCCATCGAT 120
consensus_6885#1      ACGATCGATGGCCATTCTACATTTTTCCTCTTCGGCTAAACGATTAGAACGATCTTCAAG 65
                      * * * ** *  * *****    ***   *   *   ***    ***** *  * ** * 

consensus_6885#0      CGTGAAGAGGAGAAATTTCAAGCGGAACGAAGAAAGAAAGCTGTTGATAAAGCGAAGCAG 180
consensus_6885#1      CTTC-----------TTTTGTCTTGATCCCAAAAGTGTATTTGTCCA-ATTTTTTACCAT 113
                      * *            ***      ** *  * **    *  ***  * *      * ** 

consensus_6885#0      CTATTATATTACGAAACGGATCGTTTTCGATTATTACATGTAAATTCGTAGTATAACCTA 240
consensus_6885#1      TTCTCTTGATTGTGTTTTAATTTCTCTAATCTGTAACTTCTTCTCTTCTATTTTAGCAGT 173
                       * *  *  *         **   * *    * * ** * *    *  ** * ** *   

consensus_6885#0      ATAATCCTAATGATAATTATCGTAATATCAAAACTAAAATTTACAAGTGAACTTCTGCAA 300
consensus_6885#1      TTCACTCAAATGACTATCCATTTGGTTTC----TTAAACGTTTCCATTCTGATT----GA 225
                       * *  * *****  **     *  * **     ****  ** * * *    **     *

consensus_6885#0      CTCCTAAAATAAATGTGAGAACGTTTTACCAGGTCCCAGTGATTAGTTTGTAATGGAGAA 360
consensus_6885#1      CTTATCAGTTTCACT------CGTCTTAC---GTCC-----ACAGGTGTATCATTAACAG 271
                      **  * *  *  *        *** ****   ****     *   ** * * **  * * 

consensus_6885#0      AATCACAAAAAACGAAAGATCGGGTTTTCGTTAACATTTCAACGTTCTT--GTGGTTTAC 418
consensus_6885#1      GATTTTCAAATA---AAAATTCTTTCCTGTCTCTCATTTTGGCAATGTGAAGCGGTCCAC 328
                       **    *** *   ** **    *  *   *  *****   *  * *   * ***  **

consensus_6885#0      ATTCAAACGAAACAACGCTATAGATGTTCATATATTAGGCTAAAATATATTCCTTCACGA 478
consensus_6885#1      GTCTAGACGGAA-GGTACTTTGTATACTAAAGGAGCATG-TAGAGTA------------- 373
                       *  * *** **     ** *  **  * *   *  * * ** * **             

consensus_6885#0      CTACCCTTATATTGATGTAGTAAATTATTAAGTCATGTCTTTATTGCTTTTACGGACTTA 538
consensus_6885#1      ------------------------------------------------------------
                                                                                  

consensus_6885#0      TCCTANTAATAATGCTA 555
consensus_6885#1      -----------------