cluster # 6900

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Schistosoma mansoni
cluster # 6900 cluster # 6900 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6900#0 length = 665 sequences # 1

consensus_6900#1 length = 590 sequences # 3

consensusID : consensus_6900#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence

                              [GACGTGGCGACCTAGGTATTAGTATTATTGTTTAGAGTATAGTATATTACTCTGACGTGAAAATTTGATGTAATTTGCTAGTTAGCTGTCTGAAATAACATTTATCAGCAAACAGACTTATCGTGTATCCAGAATTAGTGATTAAATCCGATTAGTATCATAGGTGAGAAGAAGGAAATATAGAACTTGCTTCGCTATTCGGTGAATTAATTTTCATGCTTTTAGCGAGTACTTGTTATATTTTACGTTTAATCTGCAATAAACACGAAACCCATTTCTATTATGTAACGCTGCTTAATATGATTAGGACATATATATGTGCGCTTTCTATTGACGTTTGTGTCAGTATACAAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTAAACTATAGAATCAAGACCATATGCTCTGGAGATACGGTTGAAGAAGAAACAAAAGCATAATACACGACCCTGAGAGAAAATGGATACCCAGAGAAATTTTTAAATAAAAACAACTAGTAAAAGAGATCATAAAGAATGTTTAATTGTGAATCANAAGCCTCTGTATATGCGTCTACAATTCAGAGGCGACGCACCTAGCGAGATGTNTAGACTGAAGTTACGAAGATCAATCGANAGGACTTTTAATGGCAGTAAACTA]

[+] EMBL CD079348             [GACGTGGCGACCTAGGTATTAGTATTATTGTTTAGAGTATAGTATATTACTCTGACGTGAAAATTTGATGTAATTTGCTAGTTAGCTGTCTGAAATAACATTTATCAGCAAACAGACTTATCGTGTATCCAGAATTAGTGATTAAATCCGATTAGTATCATAGGTGAGAAGAAGGAAATATAGAACTTGCTTCGCTATTCGGTGAATTAATTTTCATGCTTTTAGCGAGTACTTGTTATATTTTACGTTTAATCTGCAATAAACACGAAACCCATTTCTATTATGTAACGCTGCTTAATATGATTAGGACATATATATGTGCGCTTTCTATTGACGTTTGTGTCAGTATACAAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTAAACTATAGAATCAAGACCATATGCTCTGGAGATACGGTTGAAGAAGAAACAAAAGCATAATACACGACCCTGAGAGAAAATGGATACCCAGAGAAATTTTTAAATAAAAACAACTAGTAAAAGAGATCATAAAGAATGTTTAATTGTGAATCANAAGCCTCTGTATATGCGTCTACAATTCAGAGGCGACGCACCTAGCGAGATGTNTAGACTGAAGTTACGAAGATCAATCGANAGGACTTTTAATGGCAGTAAACTA]




>consensus_6900#0
GACGTGGCGACCTAGGTATTAGTATTATTGTTTAGAGTATAGTATATTACTCTGACGTGA
AAATTTGATGTAATTTGCTAGTTAGCTGTCTGAAATAACATTTATCAGCAAACAGACTTA
TCGTGTATCCAGAATTAGTGATTAAATCCGATTAGTATCATAGGTGAGAAGAAGGAAATA
TAGAACTTGCTTCGCTATTCGGTGAATTAATTTTCATGCTTTTAGCGAGTACTTGTTATA
TTTTACGTTTAATCTGCAATAAACACGAAACCCATTTCTATTATGTAACGCTGCTTAATA
TGATTAGGACATATATATGTGCGCTTTCTATTGACGTTTGTGTCAGTATACAAACTTTCT
TAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTAAACTATAGAATCAA
GACCATATGCTCTGGAGATACGGTTGAAGAAGAAACAAAAGCATAATACACGACCCTGAG
AGAAAATGGATACCCAGAGAAATTTTTAAATAAAAACAACTAGTAAAAGAGATCATAAAG
AATGTTTAATTGTGAATCANAAGCCTCTGTATATGCGTCTACAATTCAGAGGCGACGCAC
CTAGCGAGATGTNTAGACTGAAGTTACGAAGATCAATCGANAGGACTTTTAATGGCAGTA
AACTA

consensusID : consensus_6900#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 590
fasta sequence

                              [CAACGACTATACTGACTTAATGGAGACACTACAGCTATTCAATACAGCCCATCCGTCTATTAACTTCTCATGTGAGGAGGAAAATGGAGGTAGGATCGCTTTTCTATATGTTCTCCTTACAGAGAGAAAAGACGGTTCATTAAGGAGAAATATAAACAGGAAAAAATCGTGGACGGGTCAGTATACTAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTACACTATAGAATTAAGACCATATGCTCTGAAGATACGGTCGAGGAAGAAACAAAAGCATTATATAGGACCCTGAGAGAAAATGGATACCCGGAGAAATTTATAAATAAAAACATTACTAATAGAAGAGACCATAAAGAATGTTTGATTGTGAATAAAAAACCTCTGTATATACGTCTACAATCCAGAGGTGACGCACCTGGTGAAATGGTAAGATTGAAACTACGAAGATCAATCGAAAGGACTTTTAATGAAGGTAAACTACAACTAATGTTTTCCACACGCCCAATGATCACGCCGACATTGAAAGATAAATTGCCTAGACTAGCCACTTCTTTCTGTATCTATCAAT]

[+] EMBL CD115442             [CAACGACTATACTGACTTAATGGAGACACTACAGCTATTCAATACAGCCCATCCGTCTATTAACTTCTCATGTGAGGAGGAAAATGGAGGTAGGATCGCTTTTCTATATGTTCTCCTTACAGAGAGAAAAGACGGTTCATTAAGGAGAAATATAAACAGGAAAAAATCGTGGACGGGTCAGTATACTAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTACACTATAGAATTAAGACCATATGCTCTGAAGATACGGTCGAGGAAGAAACAAAAGCATTATATAGGACCCTGAGAGAAAATGGATACCCGGAGAAATTTATAAATAAAAACATTACTAATAGAAGAGACCATAAAGAATGTTTGATTGTGAATAAAAAACCTCTGTATATACGTCTACAATCCAGAGGTGACGCACCTGGTGAAATGGTAAGATTGAAACTACGAAGATCAATCGAAAGGACTTTTAATGAAGGTAAACTACAACTAATGTTTTCCACACGCCCAATGATCACGCCGACATTGAAAGATAAATTGCCTAGACTAGCCACTTCTTTCTGTATCTATCAAT]
[+] EMBL CD115517             [                                                             AACTT ACATGTGAGGAGGAAAATGGAGGTAGGATCGCTTTTCTATATGTTCTCCTTACAAAGAGAAAAGACGGTTCATTAAGGAGAAATATAAACAGGAAAAAATCGTGGACGGGTCAGTATACTAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTACACTATAGAATTAAGACCATATGCTCTGAAGATACGGTCGAGGAAGAAACAAAAGCATTATATAGGACCCTGAGAGAAAATGGATACCCGGAGAAATTTATAAATAAAAACATTACTAATAAAAGAGACCATAAAGAATGTTTGATTGTGAATAAAAAACCTCTGTATATACGTCTACAATTCAGAGGTGACGCACCTGGTGAAATGGTAAGATTGAAACTACGAAGATCAATCGAAAGGACTTTTAATGAAGGTAAACTACAACTAATGTTTTCCACACGCCCAATGATCACGCCGACATTGAAAGATAAATTGCC                                ]
[-] EMBL CD166868             [                                                                                                                                             AAGGAGAAATATAAACAGGAAAACATCGTGGACGGGTCAGTATACTAACTTTCTTAGTTTTGTTCCTCTACAGTAC AAAGGAACCTAATTAAGACATTACACTATAGAATCAAGACCA                                                                                                                                                                                                                                                                                                                                          ]




>consensus_6900#1
CAACGACTATACTGACTTAATGGAGACACTACAGCTATTCAATACAGCCCATCCGTCTAT
TAACTTCTCATGTGAGGAGGAAAATGGAGGTAGGATCGCTTTTCTATATGTTCTCCTTAC
AGAGAGAAAAGACGGTTCATTAAGGAGAAATATAAACAGGAAAAAATCGTGGACGGGTCA
GTATACTAACTTTCTTAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATT
ACACTATAGAATTAAGACCATATGCTCTGAAGATACGGTCGAGGAAGAAACAAAAGCATT
ATATAGGACCCTGAGAGAAAATGGATACCCGGAGAAATTTATAAATAAAAACATTACTAA
TAGAAGAGACCATAAAGAATGTTTGATTGTGAATAAAAAACCTCTGTATATACGTCTACA
ATCCAGAGGTGACGCACCTGGTGAAATGGTAAGATTGAAACTACGAAGATCAATCGAAAG
GACTTTTAATGAAGGTAAACTACAACTAATGTTTTCCACACGCCCAATGATCACGCCGAC
ATTGAAAGATAAATTGCCTAGACTAGCCACTTCTTTCTGTATCTATCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6900#0      GACGTGGCGACCTAGGTATTAGTATTATTGTTTAGAGTATAGTATATTACTCTGACGTGA 60
consensus_6900#1      ------------------------------------------------------------
                                                                                  

consensus_6900#0      AAATTTGATGTAATTTGCTAGTTAGCTGTCTGAAATAACATTTATCAGCAAACAGACTTA 120
consensus_6900#1      ------------------------------------------------------------
                                                                                  

consensus_6900#0      TCGTGTATCCAGAATTAGTGATTAAATCCGATTAGTATCATAGGTGAGAAGAAGGAAATA 180
consensus_6900#1      ----------------------------CAACGACTAT-ACTGACTTAATGGAGACACTA 31
                                                  * *  * *** *  *     * * **  * **

consensus_6900#0      TAGAACTTGCTTCGCTATTCGGTGAATTAATTTTCATGCTTTTAGCGAGTACTTGTTATA 240
consensus_6900#1      CAG------CTATTCAATACAGCCCATCCGTCTATTAACTTCT--CATGTGAGGAGGAAA 83
                       **      **   * ** * *   **   * *     *** *  *  **       * *

consensus_6900#0      TTTTACGTTTAATCTGCAATAAACACGAAACCCATTTCTATTATGTAACGCTGCTTAATA 300
consensus_6900#1      ATGGAGGTAGGATCGCTTTTCTATATGTT-CTCCTTACAGAGAGAAAAGACGGTTCATTA 142
                       *  * **   ***     *  * * *   * * ** *    *   **  * * * * **

consensus_6900#0      TGATTAGGACATATATATGTGCGCTTTCTATTGACGTTTGTGTCAGTATACAAACTTTCT 360
consensus_6900#1      AG---GAGAAATATAAACAGGAAAAAATCGTGGACGG----GTCAGTATACTAACTTTCT 195
                       *     ** ***** *   *         * ****     ********** ********

consensus_6900#0      TAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTAAACTATAGAATCAA 420
consensus_6900#1      TAGTTTTGTTCCTCTACAGTACAAAAGGAACCTAATTAAGACATTACACTATAGAATTAA 255
                      ********************************************** ********** **

consensus_6900#0      GACCATATGCTCTGGAGATACGGTTGAAGAAGAAACAAAAGCATAATACACGACCCTGAG 480
consensus_6900#1      GACCATATGCTCTGAAGATACGGTCGAGGAAGAAACAAAAGCATTATATAGGACCCTGAG 315
                      ************** ********* ** **************** *** * *********

consensus_6900#0      AGAAAATGGATACCCAGAGAAATTTTTAAATAAAAACA--ACTAGTAAAAGAGATCATAA 538
consensus_6900#1      AGAAAATGGATACCCGGAGAAATTTATAAATAAAAACATTACTAATAGAAGAGACCATAA 375
                      *************** ********* ************  **** ** ****** *****

consensus_6900#0      AGAATGTTTAATTGTGAATCANAAGCCTCTGTATATGCGTCTACAATTCAGAGGCGACGC 598
consensus_6900#1      AGAATGTTTGATTGTGAATAAAAAACCTCTGTATATACGTCTACAATCCAGAGGTGACGC 435
                      ********* ********* * ** *********** ********** ****** *****

consensus_6900#0      ACCTAGCGAGATGTNTAGACTGAAGTTACGAAGATCAATCGANAGGACTTTTAATGGCAG 658
consensus_6900#1      ACCTGGTGAAATGGTAAGATTGAAACTACGAAGATCAATCGAAAGGACTTTTAATGAAGG 495
                      **** * ** ***   *** ****  **************** *************   *

consensus_6900#0      TAAACTA----------------------------------------------------- 665
consensus_6900#1      TAAACTACAACTAATGTTTTCCACACGCCCAATGATCACGCCGACATTGAAAGATAAATT 555
                      *******                                                     

consensus_6900#0      -----------------------------------
consensus_6900#1      GCCTAGACTAGCCACTTCTTTCTGTATCTATCAAT 590