These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence [GCCGAAAATGACGAGATAAAAACCCACTATATTAAGACAAAATAATTAAGAAAATGCTTGAAATGAAAATAAAGGGAAAGAATACATGTTTCCACATCAGCAGACCGATTTCGAGCTAAATCACAGAAATTCTCCAACCTGTAAGTCATTCTAACATGAGAGCTTTGTGGTTGCTAACAACGGAAAAAAGTTTAGTAGTACCTAACTAGTAATTCACTCATATACATTGCTCACATCACTAGGATAGACTTATTTCCGGATTAAAAGTTTATGTTTATAACAAAGCAATGCAATATTTAGCTTATACTGACTATCATGGTAGTCATATTACTAAATGAGCTCTAAAAAACAAGTATAGTCACTTTTTCGAGTTCTTATGACCCCTTTATCTTTACAGGTAACTCATCCTGACTTTATGTTA] [+] EMBL CD080013 [GCCGAAAATGACGAGATAAAAACCCACTATATTAAGACAAAATAATTAAGAAAATGCTTGAAATGAAAATAAAGGGAAAGAATACATGTTTCCACATCAGCAGACCGATTTCGAGCTAAATCACAGAAATTCTCCAACCTGTAAGTCATTCTAACATGAGAGCTTTGTGGTTGCTAACAACGGAAAAAAGTTTAGTAGTACCTAACTAGTAATTCACTCATATACATTGCTCACATCACTAGGATAGACTTATTTCCGGATTAAAAGTTTATGTTTATAACAAAGCAATGCAATATTTAGCTTATACTGACTATCATGGTAGTCATATTACTAAATGAGCTCTAAAAAACAAGTATAGTCACTTTTTCGAGTTCTTATGACCCCTTTATCTTTACAGGTAACTCATCCTGACTTTATGTTA] consensusID : consensus_6910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 209 fasta sequence [CTTGAACGAGTTTCCAAAATTAGTTTCTTTCAAAAAGTGTATTGAAGATTTACCACAAATCAAGAACTACTTAAATTCTAGCAGGTACATAAAATGGCCTCTGCAAGGTTGGGATGCTACGTTTGGTGGTGGAGATACTCCTCCAAAATAGATTAACAGTAAATCTGGTAAATAACATAAAAAGCCTGTTATATGTTTACTAAATAAAA] [+] EMBL SMGSTA [CTTGAACGAGTTTCCAAAATTAGTTTCTTTCAAAAAGTGTATTGAAGATTTACCACAAATCAAGAACTACTTAAATTCTAGCAGGTACATAAAATGGCCTCTGCAAGGTTGGGATGCTACGTTTGGTGGTGGAGATACTCCTCCAAAATAGATTAACAGTAAATCTGGTAAATAACATAAAAAGCCTGTTATATGTTTACTAAATAAAA] [+] EMBL SMGST26 [CTTGAACGAGTTTCCAAAATTAGTTTCTTTCAAAAAGTGTATTGAAGATTTACCACAAATCAAGAACTACTTAAATTCTAGCAGGTACATAAAATGGCCTCTGCAAGGTTGGGATGCCACGTTTGGTGGTGGAGATACTCCTCCAAAATAGATTAACAGTAAATCTGGTAAATAACATAAAAAGCCTGTTATATGTTTACTAAA ] [+] EMBL AW017133 [CTTGAACGAGTTTCCAAAATTAGTTTCTTTCAAAAAGTGTATTGAAGATTTACCACAAATCAAGAACTACTTAAATTCTAGCAGGTACATAAAATGGCCTCTGCAAGGTTGGGATGCTACGTTTGGTGGTGGAGATACTCCTNCAAAATAGATTAACAGTAAATCTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6910#0 GCCGAAAATGACGAGATAAAAACCCACTATATTAAGACAAAATAATTAAGAAAATGCTTG 60 consensus_6910#1 ------------------------------------------------------------ consensus_6910#0 AAATGAAAATAAAGGGAAAGAATACATGTTTCCACATCAGCAGACCGATTTCGAGCTAAA 120 consensus_6910#1 ------------------------------------------------------------ consensus_6910#0 TCACAGAAATTCTCCAACCTGTAAGTCATTCTAACATGAGAGCTTTGTGGTTGCTAACAA 180 consensus_6910#1 CTTGAACGAGTTTCCAAAAT-TAGTTTCTTTCAA----AAAGTGTATTGAAGATTTACCA 55 * * * ***** * ** * ** ** * ** * ** * ** * consensus_6910#0 CGGAAAAAAGTTTAGTAGTACCTAACTAGTAATTCACTCATATACATTGCTCACATCACT 240 consensus_6910#1 C------AAATCAAGAACTACTTAAATTCTAGCAGGTACATA-AAATGGCCTCTGCAAGG 108 * ** * ** * *** *** * ** **** * ** ** * consensus_6910#0 AGGATAGACTTATTTCCGGATTAAAAGTTTATGTTTATAACAAAGCAATGCAATATTTAG 300 consensus_6910#1 TTGGGATGCTACGTTTGGTGGTGGAGATACTCCTCCAAAATAGATTAACAGTAAATCTGG 168 * * ** ** * * * * * * ** * * ** * ** * * consensus_6910#0 CTTATACTGACTATCATGGTAGTCATATTACTAAATGAGCTCTAAAAAACAAGTATAGTC 360 consensus_6910#1 -------TAAATAACATAAAAAGCCTGTTAT---ATGTTTACTAAATAAAA--------- 209 * * ** *** * * * *** *** ***** ** * consensus_6910#0 ACTTTTTCGAGTTCTTATGACCCCTTTATCTTTACAGGTAACTCATCCTGACTTTATGTT 420 consensus_6910#1 ------------------------------------------------------------ consensus_6910#0 A 421 consensus_6910#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||