These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 737 fasta sequence [TACTGGAATCCAACCCATACGTTTAATAGTGCCCACCATAGCCTTTGGTAATCACTTCACTGGTANAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTTTCTCGATTTATATCAATAAGTTCAGCCGTATCTCTATCTCCACCCTGAAATCCATTTGGACATGGACCCGTACCAATGCCAGTTGGTGTTTCATATGGCTGCATGTCTATATCCCAATCGAAAGATGAGGGTTCGTCAAAAATCTCTTCTTTTCTTAGTGGGTCTAACTTCTCCCAAGTACGTTGGTCAGTGTGGAAAACTAGGCCAGATCCACCCTTTTACCAAACAAGTTCAATTTTACTTTCATACTTTAACTGTGCCTTGTTTCCCCTGTCTAAATTGTACGGGTCGTCATGCAACGCCTCGAAACGATCCCATTCTTCTGGGATATCATCTTCATCCTCAAAATTAACTGGGTCCGAAACTAATTCTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAATATAAGAATTGCAGACGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCACATTTTCATCCCCTGAACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATATTTGCGGATCTTAGCTTGCGTAGAGAAGTCCAAATTAAGCTTCGAAATAATTGAACTCTCCAGTTTACAGTCTTTGATCAGACTGAAAAAGTACTGAGTA] [-] EMBL CD080072 [TACTGGAATCCAACCCATACGTTTAATAGTGCCCACCATAGCCTTTGGTAATCACTTCACTGGTANAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTTTCTCGATTTATATCAATAAGTTCAGCCGTATCTCTATCTCCACCCTGAAATCCATTTGGACATGGACCCGTACCAATGCCAGTTGGTGTTTCATATGGCTGCATGTCTATATCCCAATCGAAAGATGAGGGTTCGTCAAAAATCTCTTCTTTTCTTAGTGGGTCTAACTTCTCCCAAGTACGTTGGTCAGTGTGGAAAACTAGGCCAGATCCACCCTTTTACCAAACAAGTTCAATTTTACTTTCATACTTTAACTGTGCCTTGTTTCCCCTGTCTAAATTGTACGGGTCGTCATGCAACGCCTCGAAACGATCCCATTCTTCTGGGATATCATCTTCATCCTCAAAATTAACTGGGTCCGAAACTAATTCTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAATATAAGAATTGCAGACGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCACATTTTCATCCCCTGAACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATATTTGCGGATCTTAGCTTGCGTAGAGAAGTCCAAATTAAGCTTCGAAATAATTGAACTCTCCAGTTTACA ] [+] EMBL CD095454 [ aGGGTGCGAAACTAATTCTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAATATAAGAATTGCAGACGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCACATTTTCATCCCCTGAACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATATTTGCGGATCTTAGCTTGCGTAGAGAAGTCCAAATTAAGCTTCGAAATAATTGAACTCTGCAGTTTACAGTCTTTGATCAGACTGAAAAAGTACTGAGTA] [+] EMBL CD095453 [ CTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAATATAAGAATTGCAGACGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCACATTTTCATCCCCTGAACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATATTTGCGGATCTTAGCTTGCGTAGAGAAGTCCAAATTAAGCTTCGAAATAATTGAACTCTCCAGTTTACAGTCTTTGATCAGACTGAAAAAGTACTGAGTA] consensusID : consensus_6912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence [TTAGNNATTTATTTTAAGCATAAAAGTGTAAAGATAAAATATAAAACTACGGACGAATTATAAAATCTCTGANTTTATATACATTGAATTACGACAGAATATATATACATTGAAANANAGTTATGACGGGTTTAAGTAACCACCAGATACAAAAGAAATACCCTCTTTAGATAGATTACTGTAAGTGTTCAGAATAACAGTACGATTTCTTATTGGAAGTCTCTCATATAAAGGTTTAGAGGATATCGGATGACTCAATGATTCTTCTCTATCATTTAACCATTTTACGACCATCCCAGGATCATTACGTCTCAAAATACTGGGAGAAAAACCAAGTCCACTACGATGAGCAACAGTCTGTGGAGAATCAAACACAGATCGGATGTAAACAGATTTTGTTGCGTATCCTATTTTGCAGGATTTTGATTCCCCGCTTAATAACTGCTTGTTATAATTGCGTGAAATTGGCGCCCCGTAGTAACCAAGACCCTTCCGGACTCCGGGTGGAAGACTACCTTCACAAGTTATAGGAACTTTTATCCCCGAAGAAAATCTAGGATGACCTCTTTTAGCTCCGAGTCCAGTACCTGGAATCCAACCCATACGTTTTAATAGTTGCCCACCATAGCCTTTGGTAATCACTTCACTGGTAAAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTCCTCGTGCCGAATTATTGGCCTNCGAG] [-] EMBL CD080534 [TTAGNNATTTATTTTAAGCATAAAAGTGTAAAGATAAAATATAAAACTACGGACGAATTATAAAATCTCTGANTTTATATACATTGAATTACGACAGAATATATATACATTGAAANANAGTTATGACGGGTTTAAGTAACCACCAGATACAAAAGAAATACCCTCTTTAGATAGATTACTGTAAGTGTTCAGAATAACAGTACGATTTCTTATTGGAAGTCTCTCATATAAAGGTTTAGAGGATATCGGATGACTCAATGATTCTTCTCTATCATTTAACCATTTTACGACCATCCCAGGATCATTACGTCTCAAAATACTGGGAGAAAAACCAAGTCCACTACGATGAGCAACAGTCTGTGGAGAATCAAACACAGATCGGATGTAAACAGATTTTGTTGCGTATCCTATTTTGCAGGATTTTGATTCCCCGCTTAATAACTGCTTGTTATAATTGCGTGAAATTGGCGCCCCGTAGTAACCAAGACCCTTCCGGACTCCGGGTGGAAGACTACCTTCACAAGTTATAGGAACTTTTATCCCCGAAGAAAATCTAGGATGACCTCTTTTAGCTCCGAGTCCAGTACCTGGAATCCAACCCATACGTTTTAATAGTTGCCCACCATAGCCTTTGGTAATCACTTCACTGGTAAAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTCCTCGTGCCGAATTATTGGCCTNCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6912#0 TACTGGAATCCAACCCATACGTTTAATAGTGCCCACCATAGCCTTTGGTAATCACTTCAC 60 consensus_6912#1 --TTAGNNATTTATTT-TAAGCATAAAAGTGTA-AAGATAAAATATAA-AACTACGG-AC 54 * * * ** * *** **** * *** * * ** ** ** consensus_6912#0 TGGTANAAAGGGCGTATGGATTATGTGCAAGGTCTTGAACATGAATAGATTCCCTTTCTC 120 consensus_6912#1 GAATTATAAAATCTCTGANTTTATATACATTGAATTACGACAGAATATATATACATTGAA 114 * ** * **** * ** * ** ***** ** * ** consensus_6912#0 GATTTATATCAATAAGTTCAGCCGTATCTCTATCTCCACCCTGAAATCCATTTGGACATG 180 consensus_6912#1 ANANAGTTATGACGGGTTTAAGTA-ACCACCAGATACAAAAGAAATACCCTCTTTAGATA 173 * * *** * * * * * * ** ** ** * * * ** consensus_6912#0 GACCCGTACCAATGC-CAGT----TGGTGTTTCATATGGCTGCATGTCTATATCCCAA-- 233 consensus_6912#1 GATTACTGTAAGTGTTCAGAATAACAGTACGATTTCTTATTGGAAGTCTCTCATATAAAG 233 ** * * ** *** ** * * ** * **** * ** consensus_6912#0 --TCGAAAGATGAGGGTTCGTCAAAAATCTCTTCTTTTC---TTAGTGGGTCTAACTTC- 287 consensus_6912#1 GTTTAGAGGATATCGGATGACTCAATGATTCTTCTCTATCATTTAACCATTTTACGACCA 293 * * *** ** * ** ****** * *** * ** * consensus_6912#0 TCCCAAGTACGTTGGTCAGTGTGGAAAACTAGGCCAGATCCACCCTTTTACCAAACAAGT 347 consensus_6912#1 TCCCAGGATCATTA--CGTCTCAAAATACTGGG--AGAAAAACCAAGTCCACTACGATGA 349 ***** * * ** * ** *** ** *** *** * * * * * consensus_6912#0 TCAATTTTACTTTCATACTTTAAC-TGTGCCTTGTTTCCCCTGTCTAAATTGTACGGGTC 406 consensus_6912#1 GCAACAGTCTGTGGAGAATCAAACACAGATCGGATGTAAACAGATTTTGTTGCGTATCCT 409 *** * * * * * *** * * * * * * *** consensus_6912#0 GTCATGCAACGCCTCGAAACGATCCCATTCTTCTGGGATATCATCTTCATC-CTCAAAAT 465 consensus_6912#1 ATTTTGCAGGATTTTGAT----TCCCCGCTTAATAACTGCTTGTTATAATTGCGTGAAAT 465 * **** * ** **** * * * * * ** * **** consensus_6912#0 TAACTGGGTCCGAAACTAATTCTAAAACGTTACTGGAGGGTACGCGGCGCCTATTAGGAA 525 consensus_6912#1 TGGC---GCCCCGTAGTAA--CCAAGACCCTTCCGGAC--TCCGGGTGGAAGACTACCTT 518 * * * ** * *** * ** ** * * *** * ** * * * ** consensus_6912#0 TATAAGAATTGCAGACGACACCATATTCAAAGTCAACATCATTTGATTCCGAAGAATGCA 585 consensus_6912#1 CACAAG--TTATAGGAACTTTTATCCCCGAAGAAAATCTAGGATGACCTCTTTTAGCTC- 575 * *** ** ** ** * *** ** * *** * * * consensus_6912#0 CATTTTCATCCCCTGAACTTGAACTTTCATAAGTGAAAGGAACTGCGCCATA---TTTGC 642 consensus_6912#1 CGAGTCCAGTACCTGGAATCCAACCCATACGTTTTAATAGTTGCCCACCATAGCCTTTGG 635 * * ** **** * * *** * * ** * * ***** **** consensus_6912#0 GGATC--TTAGCTTGCGTAGAGAA-GTCCAAATTAAGCTTCGAAATAATTGAACTCTCCA 699 consensus_6912#1 TAATCACTTCACTGGTAAAAAGGGCGTATGGATTATG-TGCAAGGTC-TTGAACATGAAT 693 *** ** ** * * ** ** **** * * * * * ****** consensus_6912#0 GTTTACAGTCTTTGATCAGACTGAAAAAGTACTGAGTA 737 consensus_6912#1 AGATTCCCTCCTCGTGCCGAATTATTGGCCTNCGAG-- 729 * * ** * * * ** * * *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||