These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6916#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [ATTATGGACATCAAGGTTAATATCGACGGAGTACTCAGAGAAGTTTGTGGGATTAATGAAGGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTTTATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATTATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGTTGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCACGATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAACTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCCCGATTCGGTGGTAATAACAACATAGTGATAGTAATAAATATATAAAGATGGTTATTCTACATTGG] [+] EMBL CD080654 [ATTATGGACATCAAGGTTAATATCGACGGAGTACTCAGAGAAGTTTGTGGGATTAATGAAGGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTTTATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATTATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGTTGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCACGATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAACTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCCCGATTCGGTGGTAATAACAACATAGTGATAGTAATAAATATATAAAGATGGTTATTCTACATTGG] consensusID : consensus_6916#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 653 fasta sequence [TCGAGGCCAGNATTCGGCACGAGGGTTTGTGGGATTAATGAAGGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTTTATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATTATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGTTGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCACGATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAACTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCCCGATTCGGTGG] [+] EMBL CD080553 [TCGAGGCCAGNATTCGGCACGAGGGTTTGTGGGATTAATGAAGGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTTTATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATTATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGTTGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCACGATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAACTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCCCGATTCGGTGG] [+] EMBL AA958276 [ AGTTTGCCTGGATTTTATACTCTGGTTGCCAGCTGCAGAGAT AAG AATTACATTATCTCCAGAAG AAGAATTAT AACTTCATCAAAGAAACTAAAG AAATCCATCTAACATATGTTTTATTCTTCGTCGATTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTCCCTCTACTTCATCATCCTTACCAATTCC ] [-] EMBL CD112654 [ GGCTGTATCTCCATTCTCTCTAAAAATTCCTAAAGCATATCCTCCTGTTCCCAATCATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAACGTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATTCCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTACTCGTTGTGATCCTAGTTGTGAATTAATTCACTCTTCCTTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6916#0 ATTATGGACATCAAGGTTAATATCGACGGAGTACTCAGAGAAGTTTGTGGGATTAATGAA 60 consensus_6916#1 ----------TCGAGGCCAGNATT--CGG------CACGAGGGTTTGTGGGATTAATGAA 42 ** *** * ** *** ** ****************** consensus_6916#0 GGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTT 120 consensus_6916#1 GGAACAACGTGTGAAGAAGTGATTTTCAAGCTTGCACAGATCGCTAGTTTGCCTGGATTT 102 ************************************************************ consensus_6916#0 TATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATT 180 consensus_6916#1 TATACTCTGGTTGCCAGCTGCAGAGATAAAGAAATTACATTATCTCCAGAAGAAAGAATT 162 ************************************************************ consensus_6916#0 ATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGA 240 consensus_6916#1 ATAAACTTCATCAAAGAAACTAAAGAAAATCCATCTAACATATGTTTTATTCTTCGTCGA 222 ************************************************************ consensus_6916#0 TTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAAT 300 consensus_6916#1 TTGGAGGCTGTATCTCCATTCTCTCCAAAAATTCCTAAAGCATATCCTCCTGTTCCCAAT 282 ************************************************************ consensus_6916#0 CATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAAC 360 consensus_6916#1 CATCAACCTACAAGTCGTCCTCATCAACAGCCCTCTCGTAGTTCATCACGACGCTCTAAC 342 ************************************************************ consensus_6916#0 GTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATT 420 consensus_6916#1 GTTCCAGTGACATCTGAAAACAAAGAATTATGTTCCTCTACTTCATCATCCTTACCAATT 402 ************************************************************ consensus_6916#0 CCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGT 480 consensus_6916#1 CCAGCTCAGCATTGTGTTAGCTCTACAAAGCAATCAAGAATTTATCGTTGTGATCCTAGT 462 ************************************************************ consensus_6916#0 TGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCAC 540 consensus_6916#1 TGTGAATTAATTCACTCTTCCTTAGTAACCAGTGCTGCCGGTGAAGAAAAATCATATCAC 522 ************************************************************ consensus_6916#0 GATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAA 600 consensus_6916#1 GATGTTGATCAATATAATCAACTTAAAGATCAATTGGCATATCAAGAACAACAAGTTGAA 582 ************************************************************ consensus_6916#0 CTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCC 660 consensus_6916#1 CTCAATCGAATACGGTTGCTTCGATTAGACAAGGAAATCAATCATTTAGAACAGTCAGCC 642 ************************************************************ consensus_6916#0 CGATTCGGTGGTAATAACAACATAGTGATAGTAATAAATATATAAAGATGGTTATTCTAC 720 consensus_6916#1 CGATTCGGTGG------------------------------------------------- 653 *********** consensus_6916#0 ATTGG 725 consensus_6916#1 ----- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||