These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6920#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 661 fasta sequence [CCTCCGAGGCCAANAATTCGGCACGAGGCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCATGTGTGCGTGCGTGTGTATTAACGCGAGCAGCTATCCATCCATATTATTACATCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGAAAGTAAAAAAAAACATTGTGTATGCGTCCCTCTCTGTGTATATCGATAAACTTTTCGACTGGCTTCTCAGTTATTTTATTCGATTGGTTTTTAAAGAGTTTATTATATTGACGTCGTTCACTTGTTTCTAGTTGTTGCTGTTATTGTCGTTATCGTCTTCGTTGTTGTAAGATTCAGTCAGTTTTTACCTATGAATTTTTAGGAGCTGCCTCATATATACTGTTTCTCATTATTATTTCTCTCGCCCACTCGCACATACATTTATATATATATATATATATATATATATATATATATATACATATATATAGNAAGTTTATTTAAATGCATCTNTCTTTTAATGTGCATCTGCTTCACGATCGACTT] [+] EMBL CD081391 [CCTCCGAGGCCAANAATTCGGCACGAGGCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCATGTGTGCGTGCGTGTGTATTAACGCGAGCAGCTATCCATCCATATTATTACATCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGAAAGTAAAAAAAAACATTGTGTATGCGTCCCTCTCTGTGTATATCGATAAACTTTTCGACTGGCTTCTCAGTTATTTTATTCGATTGGTTTTTAAAGAGTTTATTATATTGACGTCGTTCACTTGTTTCTAGTTGTTGCTGTTATTGTCGTTATCGTCTTCGTTGTTGTAAGATTCAGTCAGTTTTTACCTATGAATTTTTAGGAGCTGCCTCATATATACTGTTTCTCATTATTATTTCTCTCGCCCACTCGCACATACATTTATATATATATATATATATATATATATATATATATATACATATATATAGNAAGTTTATTTAAATGCATCTNTCTTTTAATGTGCATCTGCTTCACGATCGACTT] [-] EMBL CD152322 [ CCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCGTGTGTGCGTGCGTGTGTATTAACGCGAGCAGCAATCCATCCATATTATTACATCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGAAAGTAAAAAAAAACATTGTGTATGCGTCCCTCTCTGTGTATATCGATAAACTTTTCGACTGGCTTCTCAGTTATTTTATTCGATTGGTTTTCAAAGAGTTTATTATATTGACGTCGTTCACTTGTTTCTAGTTGTTGCTGTTATTGTCGTTATCGTCTTCGTTGTTGTAAGATTCAGTCAGTTTTTACCTATGAATTTTTAGGAGCTGCCTCAT ] consensusID : consensus_6920#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence [ATATGGCTCGGTGTGAATGCTGGACGTCTTAACAATTGTCATGTTAATGTTGCCGCTGTCATTTCACGTTCATCTATCCAAATATTAAATGAAAAAGCTTCAGCTGGTGGCGATGGTCCTCTTAACCATCCAGGCTATCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTCCAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCGTGTGTGCGTGCGTGTGTATTAACGCGAGCAGCAATCCATCCATATTATTACATCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGTAAATCACAGGAAACATTGTGTATGCGTCCCTCTCCGTGTAAATCGATAAACTTTTACTGAGCTAGGCTTCTCAGTATATCTATTATTACGGACTTGGTTGTGCTAAGACGCTATTATGATATCGACGTCGTTCACTTGTTTCTAGTTGTTGCTGGTATGGTCGTGATCGTGTTGCGTGGGTGTAAGATTCAGTCAGTTTTTACTTATGATATCTTTAAGGAGCTGCACTTCAT] [-] EMBL CD181611 [ATATGGCTCGGTGTGAATGCTGGACGTCTTAACAATTGTCATGTTAATGTTGCCGCTGTCATTTCACGTTCATCTATCCAAATATTAAATGAAAAAGCTTCAGCTGGTGGCGATGGTCCTCTTAACCATCCAGGCTATCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTCC ] [-] EMBL CD152243 [ TCTTAACTAT CAGGCTATCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACTAACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGGCTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCGTGTGTGCGTGCGTGTGTATTAACGCGAGCAGCAATCCATCCATATTATTACATCAAGAAATAGGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGTAAATCACAGGAAACATTGTGTATGCGTCCCTCTCCGTGTAAATCGATAAACTTTTACTGAGCTAGGCTTCTCAGTATATCTATTATTACGGACTTGGTTGTGCTAAGACGCTATTATGATATCGACGTCGTTCACTTGTTTCTAGTTGTTGCTGGTATGGTCGTGATCGTGTTGCGTGGGTGTAAGATTCAGTCAGTTTTTACTTATGATATCTTTAAGGAGCTGCACTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6920#0 ------------------------------------------------------------ consensus_6920#1 ATATGGCTCGGTGTGAATGCTGGACGTCTTAACAATTGTCATGTTAATGTTGCCGCTGTC 60 consensus_6920#0 ----------------------------------------CCTCCGAGGCCAANAATTC- 19 consensus_6920#1 ATTTCACGTTCATCTATCCAAATATTAAATGAAAAAGCTTCAGCTGGTGGCGATGGTCCT 120 * * * * * * * * consensus_6920#0 ----GGCA-CGAGGC----GTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACT 70 consensus_6920#1 CTTAACCATCCAGGCTATCGTATAGACCTATGTTAAGCAAAAACGTGTCAGCATGTCACT 180 ** * **** ***************************************** consensus_6920#0 AACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGG 130 consensus_6920#1 AACGTACATAATTCATTTTTAACTGATGAATCTCAGTCATCTTTTCATCAGTTGTATCGG 240 ************************************************************ consensus_6920#0 CTTTAAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCATG 190 consensus_6920#1 CTTCCAAAAAACAATAGTGTTTCATTTCTATATCTTCATGTGTGTGTATGTGTGTGCGTG 300 *** **************************************************** ** consensus_6920#0 TGTGCGTGCGTGTGTATTAACGCGAGCAGCTATCCATCCATATTATTACATCAAGAAATA 250 consensus_6920#1 TGTGCGTGCGTGTGTATTAACGCGAGCAGCAATCCATCCATATTATTACATCAAGAAATA 360 ****************************** ***************************** consensus_6920#0 GGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGAAAGTAAAAAAAAACA 310 consensus_6920#1 GGATAGGAATCTTACAGTATGAAAGTGTTTTTCGAAGACATTAGTAAATCACAGGAAACA 420 ******************************************** ** * * * ***** consensus_6920#0 TTGTGTATGCGTCCCTCTCTGTGTATATCGATAAACTTTTC----GACTGGCTTCTCAGT 366 consensus_6920#1 TTGTGTATGCGTCCCTCTCCGTGTAAATCGATAAACTTTTACTGAGCTAGGCTTCTCAGT 480 ******************* ***** ************** * *********** consensus_6920#0 TATTTTATT----CGA--TTGGTTTT--TAAAGAGTT--TATTATATTGACGTCGTTCAC 416 consensus_6920#1 ATATCTATTATTACGGACTTGGTTGTGCTAAGACGCTATTATGATATCGACGTCGTTCAC 540 * **** ** ****** * *** * * *** **** ************ consensus_6920#0 TTGTTTCTAGTTGTTGCTGTTATTGTCGTTATCGTCTT-CGTTGTTGTAAGATTCAGTCA 475 consensus_6920#1 TTGTTTCTAGTTGTTGCTGGTATGGTCGTGATCGTGTTGCGTGGGTGTAAGATTCAGTCA 600 ******************* *** ***** ***** ** *** * *************** consensus_6920#0 GTTTTTACCTATGA-ATTTTTA-GGAGCTGCCTCATATATACTGTTTCTCATTATTATTT 533 consensus_6920#1 GTTTTTACTTATGATATCTTTAAGGAGCTGCACTTCAT---------------------- 638 ******** ***** ** **** ******** ** consensus_6920#0 CTCTCGCCCACTCGCACATACATTTATATATATATATATATATATATATATATATATATA 593 consensus_6920#1 ------------------------------------------------------------ consensus_6920#0 TACATATATATAGNAAGTTTATTTAAATGCATCTNTCTTTTAATGTGCATCTGCTTCACG 653 consensus_6920#1 ------------------------------------------------------------ consensus_6920#0 ATCGACTT 661 consensus_6920#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||