These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6921#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 813 fasta sequence [CGGCACGAGGGANNNCGTCGTGGTGAACGCCTGCNGAGCTGCTAAGGGAGCGTATAATGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAAAGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTAGTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTTTAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACCACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTGATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATAGTTACCTCATCACGCACATATATATATACACACACACACCAAATATATGTTTTCTGTACACAGAAATTTTAAAAAAAGATTACAATAATTACAGTATTCTTTTCTAATAATTTGCATGATTTCCTTTTCTATACCATAAATTGGTATGTTCGTGTGTTTGATATATTGACTATGGAGCATAAAGTTCATTGGTGCGTACAAATAATAACTATCCTCCTTTATTCTTTATGTTAAATACAAGATCTATCTATCTATCTACCTATATAAATGTATTATTTACTGTGATTATCTTTACTCCATACTTTGTCCATTTTTGTTTTCTTTAATCTCAGTATTTAATA] [+] EMBL CD081595 [CGGCACGAGGGANNNCGTCGTGGTGAACGCCTGCNGAGCTGCTAAGGGAGCGTATAATGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAAAGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTAGTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTTTAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACCACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTGATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATAGTTACCTCATCACGCACATATATATATACACACACACACCAAATATATGTTTTCTGTACACAGAAATTTTAAAAAAAGATTACAATAATTACAGTATTCTTTTCTAATAATTTGCATGATTTCCTTTTCTATACCATAAATTGGTATGTTCGTGTGTTTGATATATTGACTATGGAGCATAAAGTTCATTGGTGCGTACAAATAATAACTATCCTCCTTTATTCTTTATGTTAAATACAAGATCTATCTATCTATCTACCTATATAAATGTATTATTTACTGTGATTATCTTTACTCCATACTTTGTCCATTTTTGTTTTCTTTAATCTCAGTATTTAATA] [-] EMBL CD152448 [ CAAATCAACTTAATATCTAATCCAACCCTAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCACTTATCAACAAACCCCCCCCTACCATTGATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCG TTTTTTTTGTTAGATAATAGTTACCTCATCACGCACATATATATATACACACACACACCAAATATATGTTTTCTGTACACAGAAATTTTAAAAAAAGATTACAATAATTACAGTATTCTTT ] consensusID : consensus_6921#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 551 fasta sequence [TCGGCACGAGGCGAAATAGGCAACGTGCACATGACTCACATCTTAAGTTAATGCACAGTCAACGACAGGAAGCAGCTCAAAATCGTCGTGGTGAACGCCTGCGAGCTGCTAGGAGCGTATATGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAAAGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTAGTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTTTAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACCACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTGATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATAGTTACCTCATCACGC] [+] EMBL CD083705 [TCGGCACGAGGCGAAATAGGCAACGTGCACATGACTCACATCTTAAGTTAATGCACAGTCAACGACAGGAAGCAGCTCAAAATCGTCGTGGTGAACGCCTGCGAGCTGCTAGGAGCGTATATGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAAAGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTAGTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTTTAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACCACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTGATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATAGTTACCTCATCACGC] [-] EMBL CD169651 [ attttggGTAGTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTTTAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACCACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTTTTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAA CCCCCCCTACCATTGATCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6921#0 ------------------------------------------------------------ consensus_6921#1 TCGGCACGAGGCGAAATAGGCAACGTGCACATGACTCACATCTTAAGTTAATGCACAGTC 60 consensus_6921#0 --CGGCACGAGG------GANNNCGTCGTGGTGAACGCCTGCNGAGCTGCTAAGGGAGCG 52 consensus_6921#1 AACGACAGGAAGCAGCTCAAAATCGTCGTGGTGAACGCCTGCG-AGCTGCTA--GGAGCG 117 ** ** ** * * ******************* ******** ****** consensus_6921#0 TATAATGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAA 112 consensus_6921#1 TATA-TGGCTGAGGATGATCCTGAGAAAGCTCGAAAGCTGGAAGAGAAAGAACAACGTAA 176 **** ******************************************************* consensus_6921#0 AGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTA 172 consensus_6921#1 AGAAAAATCGAAGAAAATGCCAAAAATGAAAATGCTCAAAATGAAATAGTTGCAATAGTA 236 ************************************************************ consensus_6921#0 GTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTT 232 consensus_6921#1 GTATTAGTTGTCGGCATTCAAAGAAGATAATATCATCATACTAGAGAAGTGAGGAATGTT 296 ************************************************************ consensus_6921#0 TAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACC 292 consensus_6921#1 TAGAAAAAAAAACAGCCCGAAATTTGGATGGTACTATTAATCGATAACAATACAAGCACC 356 ************************************************************ consensus_6921#0 ACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTT 352 consensus_6921#1 ACACCCAAATCAACTTAATATCTAATCCAACCCAAAATTTTTATCCGGCTAGTCATTGTT 416 ************************************************************ consensus_6921#0 TTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTG 412 consensus_6921#1 TTTTTTCAAAAAATATTTTAGTGTTCGTTCCATTTATCAACAAACCCCCCCCTACCATTG 476 ************************************************************ consensus_6921#0 ATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATA 472 consensus_6921#1 ATCTTTTTGTCCCTCTGTTCTAAAAAATTCATCTCATTCGTTTTTTTTTGTTAGATAATA 536 ************************************************************ consensus_6921#0 GTTACCTCATCACGCACATATATATATACACACACACACCAAATATATGTTTTCTGTACA 532 consensus_6921#1 GTTACCTCATCACGC--------------------------------------------- 551 *************** consensus_6921#0 CAGAAATTTTAAAAAAAGATTACAATAATTACAGTATTCTTTTCTAATAATTTGCATGAT 592 consensus_6921#1 ------------------------------------------------------------ consensus_6921#0 TTCCTTTTCTATACCATAAATTGGTATGTTCGTGTGTTTGATATATTGACTATGGAGCAT 652 consensus_6921#1 ------------------------------------------------------------ consensus_6921#0 AAAGTTCATTGGTGCGTACAAATAATAACTATCCTCCTTTATTCTTTATGTTAAATACAA 712 consensus_6921#1 ------------------------------------------------------------ consensus_6921#0 GATCTATCTATCTATCTACCTATATAAATGTATTATTTACTGTGATTATCTTTACTCCAT 772 consensus_6921#1 ------------------------------------------------------------ consensus_6921#0 ACTTTGTCCATTTTTGTTTTCTTTAATCTCAGTATTTAATA 813 consensus_6921#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||