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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6924#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence
[GGAGCCATANCGGCACGAGCGCTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACANATTTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTAGGAGATAATGCTTTGGAGATTCCCCTCTTTCTTTAATTTATTAGTTCTTTCCTATTATTTTGTGTTAATCATAATGCATTTTTGTAAACTTTTCCATTGTGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGGCTCTCTATTCTCAACTGCTTTAATGCTTTAGCATATTTTATCCGTCCTAACATTTTTTTATATCTACCCACTAACCTTGATTATATATGAAATTTATAGAAGAATCAATGGTGTAATTTCTCCTTCGTTGCATTATTAACTTTGGAAAAAAAAAATACCCGAAATTT]
[+] EMBL CD081712 [GGAGCCATANCGGCACGAGCGCTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACANATTTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTAGGAGATAATGCTTTGGAGATTCCCCTCTTTCTTTAATTTATTAGTTCTTTCCTATTATTTTGTGTTAATCATAATGCATTTTTGTAAACTTTTCCATTGTGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGGCTCTCTATTCTCAACTGCTTTAATGCTTTAGCATATTTTATCCGTCCTAACATTTTTTTATATCTACCCACTAACCTTGATTATATATGAAATTTATAGAAGAATCAATGGTGTAATTTCTCCTTCGTTGCATTATTAACTTTGGAAAAAAAAAATACCCGAAATTT]
[-] EMBL BG930530 [ TTGGCGTACAGGTGATTATACAAAACATATGCTTCTTATCAATGTAAATTGTGATGACGATAGTGAAGAATTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACAAATTTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTAGGAGATAATGCTTTGGAGAg ]
consensusID : consensus_6924#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[TCTACAAAAGGCTCAATTTTCTCATCACACTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACGAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACAAATTTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTTAGGAGATAATGCTTTGGAGATTTCCCTCTTTCTTTAATTTATTAGNTCTTTTCCTATTATTTTGTGTTAAACATAATGCATTTTTGTAACTTTTCCATTGGGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGGCCTCTCTATTCT]
[+] EMBL AI977212 [TCTACAAAAGGCTCAATTTTCTCATCACACTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACGAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACAAATTTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTTAGGAGATAATGCTTTGGAGATTTCCCTCTTTCTTTAATTTATTAGNTCTTTTCCTATTATTTTGTGTTAAACATAATGCATTTTTGTAACTTTTCCATTGGGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGGCCTCTCTATTCT]
consensusID : consensus_6924#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[ACTAATACAAAAGGCTCAATTTTCTCATCACACTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTTATCATATTCTTTCCGTTTTTACAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGAC]
[-] EMBL BG930807 [ACTAATACAAAAGGCTCAATTTTCTCATCACACTTAACGTCGCTTTTGGATGATAGTTATGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCAGTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAAAAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATTATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTTATCATATTCTTTCCGTTTTTACAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTTATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATACTCATACTTATGATGATTGGGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6924#0 ------------GGAGCCATANCGGCACGAGCGCTTAACGTCGCTTTTGGATGATAGTTA 48
consensus_6924#1 ---TCTACAAAAGGCTCAATTTTCTCATCA-CACTTAACGTCGCTTTTGGATGATAGTTA 56
consensus_6924#2 ACTAATACAAAAGGCTCAATTTTCTCATCA-CACTTAACGTCGCTTTTGGATGATAGTTA 59
** * ** ** * * ***************************
consensus_6924#0 TGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCA 108
consensus_6924#1 TGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCA 116
consensus_6924#2 TGGACGTCAGTGCCGATAAATCACCATTAATTCAACCTGAAGATACTTCGAACAAACCCA 119
************************************************************
consensus_6924#0 GTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAA 168
consensus_6924#1 GTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAA 176
consensus_6924#2 GTCTTCCTTCTATTACAGTTATCAAACCAAAACATCCAAGGCGCTATAAACTTTTACCAA 179
************************************************************
consensus_6924#0 AAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATT 228
consensus_6924#1 AAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATT 236
consensus_6924#2 AAGATAAACTCCGTTTCCCTAAAAATGATACTTCAAATCAATTTTGGCGTACAGGTGATT 239
************************************************************
consensus_6924#0 ATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGT------------- 275
consensus_6924#1 ATACGAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGT------------- 283
consensus_6924#2 ATACAAAACATATGCCTCTTATCAATGTAAATTGTGATGACGATAGTTATCATATTCTTT 299
**** ******************************************
consensus_6924#0 -------------GAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTT 322
consensus_6924#1 -------------GAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTT 330
consensus_6924#2 CCGTTTTTACAGTGAAGAGTTTGATGGCGCATTATTTCAAAAAGTTGCCAATAAAGGCTT 359
***********************************************
consensus_6924#0 ATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATAC 382
consensus_6924#1 ATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATAC 390
consensus_6924#2 ATGTGATTATTTAAAAAATGATCGACTGTCGTCTCATAATCGATCAAATTTAACAAATAC 419
************************************************************
consensus_6924#0 TCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACANAT 442
consensus_6924#1 TCATACTTATGATGATTGGGATTTGCATCTTTCAACACCCGTTCAACGTAGAACACAAAT 450
consensus_6924#2 TCATACTTATGATGATTGGGAC-------------------------------------- 441
*********************
consensus_6924#0 TTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTT-AGGAGATAATGCTTTGGAGA 501
consensus_6924#1 TTGTTGTCCATTCAGTTGTACATTATCATGAATTTTTTTTAGGAGATAATGCTTTGGAGA 510
consensus_6924#2 ------------------------------------------------------------
consensus_6924#0 TTCCCCTCTTTCTTTAATTTATTAGTTCTTT-CCTATTATTTTGTGTTAATCATAATGCA 560
consensus_6924#1 TTTCCCTCTTTCTTTAATTTATTAGNTCTTTTCCTATTATTTTGTGTTAAACATAATGCA 570
consensus_6924#2 ------------------------------------------------------------
consensus_6924#0 TTTTTGTAAACTTTTCCATTGTGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGG 620
consensus_6924#1 TTTTTGTAA-CTTTTCCATTGGGCATTTCCACTTTGCCCATGTTTAACATATTTCTCGGG 629
consensus_6924#2 ------------------------------------------------------------
consensus_6924#0 C-TCTCTATTCTCAACTGCTTTAATGCTTTAGCATATTTTATCCGTCCTAACATTTTTTT 679
consensus_6924#1 CCTCTCTATTCT------------------------------------------------ 641
consensus_6924#2 ------------------------------------------------------------
consensus_6924#0 ATATCTACCCACTAACCTTGATTATATATGAAATTTATAGAAGAATCAATGGTGTAATTT 739
consensus_6924#1 ------------------------------------------------------------
consensus_6924#2 ------------------------------------------------------------
consensus_6924#0 CTCCTTCGTTGCATTATTAACTTTGGAAAAAAAAAATACCCGAAATTT 787
consensus_6924#1 ------------------------------------------------
consensus_6924#2 ------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||