cluster # 693

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Schistosoma mansoni
cluster # 693 cluster # 693 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_693#0 length = 379 sequences # 1

consensus_693#1 length = 298 sequences # 1

consensusID : consensus_693#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 379
fasta sequence

                              [GGGCTCTAGGTTTAGATCTCCTCACGTTGGTGTTGTGAAAAATGAGCAGGGTACCTAAAGTTTTTGGCAAGACCTATGCGACTCCGAAAACACTTTAGGGAGGGTTNNNATATAAGNNNNNTTAAAGCTCTTGGGTGAATATGGTCTGCGCAACAAACGCGAAGTGTGGAGAGTAAAATACGTCTTANCCAATATATTAAGTCACCCCGCGAGCTGTTGACATTGAATAATAAACACCCCACACTTCTTTTTGGAGGGTCCGTTCTGATGACACTCTTATTTTGAGGTGGGGTACTTCCCGAAGATAGGATGAAACTGGATTTCGTTTTGGGCTTGAAGATAGAAGACTTTTTAGAACGAAGACTTNCAACNNTCAGTT]

[+] EMBL CD155072             [GGGCTCTAGGTTTAGATCTCCTCACGTTGGTGTTGTGAAAAATGAGCAGGGTACCTAAAGTTTTTGGCAAGACCTATGCGACTCCGAAAACACTTTAGGGAGGGTTNNNATATAAGNNNNNTTAAAGCTCTTGGGTGAATATGGTCTGCGCAACAAACGCGAAGTGTGGAGAGTAAAATACGTCTTANCCAATATATTAAGTCACCCCGCGAGCTGTTGACATTGAATAATAAACACCCCACACTTCTTTTTGGAGGGTCCGTTCTGATGACACTCTTATTTTGAGGTGGGGTACTTCCCGAAGATAGGATGAAACTGGATTTCGTTTTGGGCTTGAAGATAGAAGACTTTTTAGAACGAAGACTTNCAACNNTCAGTT]




>consensus_693#0
GGGCTCTAGGTTTAGATCTCCTCACGTTGGTGTTGTGAAAAATGAGCAGGGTACCTAAAG
TTTTTGGCAAGACCTATGCGACTCCGAAAACACTTTAGGGAGGGTTNNNATATAAGNNNN
NTTAAAGCTCTTGGGTGAATATGGTCTGCGCAACAAACGCGAAGTGTGGAGAGTAAAATA
CGTCTTANCCAATATATTAAGTCACCCCGCGAGCTGTTGACATTGAATAATAAACACCCC
ACACTTCTTTTTGGAGGGTCCGTTCTGATGACACTCTTATTTTGAGGTGGGGTACTTCCC
GAAGATAGGATGAAACTGGATTTCGTTTTGGGCTTGAAGATAGAAGACTTTTTAGAACGA
AGACTTNCAACNNTCAGTT

consensusID : consensus_693#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [CGAGTTGGTGTACTTCCCGAAGATAGGATGAAACTGGATTTCGTTTTGGGCTTGAAGATAGAAGACTTTTTAGAACGAAGACTTCAAACTCAAGTTTTTAAACTTGGCTTGGCCAGAAGCATCCATCATGCCAGGGCAGTAACTGATATGAACGGAACAATCATAGGTTCCAAGCCTCTATATGTTGCACTAGCCCAGAGGAAAAAAGATCGTCGGGCGAAGTTAATTGAAGAACATCAGCAGCGAATGGCTCAATACCGGAATCCAGTCGCCTCAATGATTCCAGCAGTTCCTGGCC]

[+] EMBL CD110777             [CGAGTTGGTGTACTTCCCGAAGATAGGATGAAACTGGATTTCGTTTTGGGCTTGAAGATAGAAGACTTTTTAGAACGAAGACTTCAAACTCAAGTTTTTAAACTTGGCTTGGCCAGAAGCATCCATCATGCCAGGGCAGTAACTGATATGAACGGAACAATCATAGGTTCCAAGCCTCTATATGTTGCACTAGCCCAGAGGAAAAAAGATCGTCGGGCGAAGTTAATTGAAGAACATCAGCAGCGAATGGCTCAATACCGGAATCCAGTCGCCTCAATGATTCCAGCAGTTCCTGGCC]




>consensus_693#1
CGAGTTGGTGTACTTCCCGAAGATAGGATGAAACTGGATTTCGTTTTGGGCTTGAAGATA
GAAGACTTTTTAGAACGAAGACTTCAAACTCAAGTTTTTAAACTTGGCTTGGCCAGAAGC
ATCCATCATGCCAGGGCAGTAACTGATATGAACGGAACAATCATAGGTTCCAAGCCTCTA
TATGTTGCACTAGCCCAGAGGAAAAAAGATCGTCGGGCGAAGTTAATTGAAGAACATCAG
CAGCGAATGGCTCAATACCGGAATCCAGTCGCCTCAATGATTCCAGCAGTTCCTGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_693#0      GGGCTCTAGGTTTAGATCTCCTCACGTTGGTGTTGTGAAAAATGAGCAGGGTACCTAAAG 60
consensus_693#1      ------------------------------------------------------------
                                                                                 

consensus_693#0      TTTTTGGCAAGACCTATGCGACTCCGAAAACACTTTAGGGA-GGGTTNNNATATAAGNNN 119
consensus_693#1      ------------------CGAGTTGGTGTACTTCCCGAAGATAGGATGAAACTGGATTTC 42
                                       *** *  *   **        **  ** *   *    *    

consensus_693#0      NNTTAAAGCTCTTGGGT-GAATATGGTCTGCGCAACAAACGCGAAGTGTGGAGAGTAAAA 178
consensus_693#1      GTTTTGGGCTTGAAGATAGAAGACTTTTTAGAACGAAGACTTCAAACTCAAGTTTTTAAA 102
                       **   ***    * * *** *   * *       * **   **          * ***

consensus_693#0      TACGTCTTANCCAATATATTAAGTCACCCCGCG--AGCTGTTGACATT----GAATAATA 232
consensus_693#1      CTTGGCTTGGCCAGAAGCATCCATCATGCCAGGGCAGTAACTGATATGAACGGAACAATC 162
                        * ***  ***  *   *   ***  **  *  **    *** **     *** *** 

consensus_693#0      A-ACACCCCACACTTCTTTTTGGAGGGTCCGTTCTGATGACACTCTTATTTTGAGGTGGG 291
consensus_693#1      ATAGGTTCCAAGCCTCTATATGTTGCACTAGCCCAGAGGAAAAAAGATCGTCGGGCGAAG 222
                     * *    ***  * *** * **  *     *  * ** ** *        * * *    *

consensus_693#0      GTACTTCCCGAAGATAGGATGAAACTGGATTTCGTTTTGGGCTTGAAGATAGAAGACTTT 351
consensus_693#1      TTAATTGAAGAACATCAGCAGCGAATGG------CTCAATACCGGAATCCAGTCGCCTCA 276
                      ** **   *** **  *  *  * ***       *     *  ***   **  * **  

consensus_693#0      TTAGAACGAAGACTTNCAACNNTCAGTT 379
consensus_693#1      ATGATTCCAGCAGTTCCTGGCC------ 298
                      *    * *  * ** *