|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence
[TATTAAGCGTGTGTTATACGACTCTTATAAGAAAACAGATGAGGAGTTTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTGCGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAATCCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTAATTCATGTTTATTTCTCTTTAATGTTGTGTTCGATACTTTGTTGTAACATTGTTTACTTTTTATGGTTAAGGTGTTATCTGTCAACCACCAGGGACTTCGGTGGTCAGACAGTATGTTGCAAGTAAGTTCGAGAGTATTGTGGTTTATTTCTAATTATGCTCCTTTTATGTGGAGTGATCATTTATGTATATATGAAACGATTTGCAGTCTCCTGTCAGTGGTTCCCTTCGCTGTCGGGACTCCACTAAGATAGTGTACACTGAAGGAAATAACTTGGATCACTGGTCAGTCATTTAATGAAGCAGTACAATATT]
[+] EMBL CD117198 [TATTAAGCGTGTGTTATACGACTCTTATAAGAAAACAGATGAGGAGTTTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTGCGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAATCCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTAATTCATGTTTATTTCTCTTTAATGTTGTGTTCGATACTTTGTTGTAACATTGTTTACTTTTTATGGTTAAGGTGTTATCTGTCAACCACCAGGGACTTCGGTGGTCAGACAGTATGTTGCAAGTAAGTTCGAGAGTATTGTGGTTTATTTCTAATTATGCTCCTTTTATGTGGAGTGATCATTTATGTATATATGAAACGATTTGCAGTCTCCTGTCAGTGGTTCCCTTCGCTGTCGGGACTCCACTAAGATAGTGTACACTGAAGGAAATAACTTGGATCACTGGTCAGTCATTTAATGAAGCAGTACAATATT]
consensusID : consensus_6934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 331 fasta sequence
[AGGTAGAAAAGGATATTAAGCGTGTGTTATACGACTCTTAAAGAAAACAGATGAGGAGTTTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTGCGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAATCCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTTGTCCTAGCCAGATTGGATGAGTCCCCATCTGAATCTAATAAAGTTGATGTCAATAGTAGCAATACTTTAAGTAATCCGAAATTGAATGCAATCTGTTTAA]
[+] EMBL CD179370 [AGGTAGAAAAGGATATTAAGCGTGTGTTATACGACTCTTAAAGAAAACAGATGAGGAGTTTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTGCGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAATCCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTTGTCCTAGCCAGATTGGATGAGTCCCCATCTGAATCTAATAAAGTTGATGTCAATAGTAGCAATACTTTAAGTAATCCGAAATTGAATGCAATCTGTTTAA]
[+] EMBL CD179376 [AGGTAGAAAAGGATATTAAGCGTGTGTTATACGACTCTTAAAGAAAACAGATGAGGAGTTTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTGCGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAATCCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTTGTCCTAGCCAGATTGGATGAGTCCCCATCTGAATCTAATAAAGTTGATGTCAATAGTAGCAATACTTTAAGTAATCCGAAATTGAATGCAATCTGTTTAA]
consensusID : consensus_6934#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence
[ATATTCGGCACGAGAGCCCGATGGTTGTTTTATTCAGTTTATTTTGCTGGTATTAGGTTGTCCTAGCCAGATTGGATGAGTCCCCATCTGAATCTAATAAAGTTGATGTCAATAGTAGCAATACTTTAAGTAATCCCAAATTGAATGCAATCTGTTTAACGAAAGACCACAACCCTATGGATTATGAAGAACTAC]
[+] EMBL CD082636 [ATATTCGGCACGAGAGCCCGATGGTTGTTTTATTCAGTTTATTTTGCTGGTATTAGGTTGTCCTAGCCAGATTGGATGAGTCCCCATCTGAATCTAATAAAGTTGATGTCAATAGTAGCAATACTTTAAGTAATCCCAAATTGAATGCAATCTGTTTAACGAAAGACCACAACCCTATGGATTATGAAGAACTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6934#0 -------------TATTAAGCGTGTGTTATACGACTCTTATAAGAAAACAGATGAGGAGT 47
consensus_6934#1 AGGTAGAAAAGGATATTAAGCGTGTGTTATACGACTCTTA-AAGAAAACAGATGAGGAGT 59
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 TTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTG 107
consensus_6934#1 TTTTGAGAGAGGCTTGTCAGCAGTAGGAATCCAACCATTATGTTTCATTCACCTTTTTTG 119
consensus_6934#2 ------------ATATTCGGCA-CGAGAGCCCGATGGTT--GTTTTATTCAGTTTATTT- 44
* ** *** ** ** * ** **** ***** ** ***
consensus_6934#0 CGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAAT 167
consensus_6934#1 CGCCCCTTTCTATTTTTCCAGGCGCCCTCACTGGAGAGATGGTAGTACAGCAGCAACAAT 179
consensus_6934#2 TGCTGGTATTAGGTTGTCCTAG---CCAGATTGGATGAGTCCCCATCTGAATCTAATAAA 101
** * * ** *** * ** * **** * * ** **
consensus_6934#0 CCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTAATTCATGT 227
consensus_6934#1 CCTATTGGTCAATAACACACTATACATTGCAAATCTTGGTGACTCTAAAGTTGTCCTAGC 239
consensus_6934#2 GTTGATG-TCAATAGTA-GCAATAC--------TTTAAGTAATCCCAAATTGAATGCAAT 151
* ** ****** * * **** * * ** * * *** *
consensus_6934#0 TTATTTCTCTTTAATGTTGTGTTCGATACTTTGTTGTAACATTGTTTACTTTTTATGGTT 287
consensus_6934#1 CAGATT--------GGATGAGTCCC-CATCTGAATCTAATAAAGTTGA-TGTCAATAGTA 289
consensus_6934#2 CTGTTTAACGAAAGACCACAACCCTATGGATTA-TGAAGAACTAC--------------- 195
** * * * * *
consensus_6934#0 AAGGTGTTATCTGTCAACCACCAGGGACTTCGGTG-GTCAGACAGTATGTTGCAAGTAAG 346
consensus_6934#1 GCAATACTTTAAGTAATCCGAAATTGAATGCAATCTGTTTAA------------------ 331
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 TTCGAGAGTATTGTGGTTTATTTCTAATTATGCTCCTTTTATGTGGAGTGATCATTTATG 406
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 TATATATGAAACGATTTGCAGTCTCCTGTCAGTGGTTCCCTTCGCTGTCGGGACTCCACT 466
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 AAGATAGTGTACACTGAAGGAAATAACTTGGATCACTGGTCAGTCATTTAATGAAGCAGT 526
consensus_6934#1 ------------------------------------------------------------
consensus_6934#2 ------------------------------------------------------------
consensus_6934#0 ACAATATT 534
consensus_6934#1 --------
consensus_6934#2 --------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||