These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 613 fasta sequence [GAGGCTTTATTCCTAATAGGTCATCAACAAACATGTGCCGAGCGCGGCATGTAATTCGGAAATGCAACGAAGATCCATCAAATGAAGAGGCTGTTGATTATCAACAAGCTGTAGCAGATAGTTTAAATACTAATGACTGTCCTGGAAGTCGAATCCTCCGCTATAATGCTGCCATTCGAGATAGTGGTAATGTACACTGCCCCACAAATAGCTCAGTATCGACTGTAAAGGGACTCTATAAGCGCGCTATACCCCAGATGCCAGAGAAAGTTCTTGATGCTCCGGACATTATTGATGATTTTTATCTTAATATTTTGGACTGGTCTGTGGACAATATTTTGGCTGTCGCGTTAAATCAAGAAGTTTATCTTTGGAACTCATCTTCAGGAGATATCACTTGTCTTATGTCCTGTGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCG--TACCAGCCGTCACTTGGCGTGAGTATTTAGTTTCCAGTGC] [+] EMBL CD083074 [GAGGCTTTATTCCTAATAGGTCATCAACAAACATGTGCCGAGCGCGGCATGTAATTCGGAAATGCAACGAAGATCCATCAAATGAAGAGGCTGTTGATTATCAACAAGCTGTAGCAGATAGTTTAAATACTAATGACTGTCCTGGAAGTCGAATCCTCCGCTATAATGCTGCCATTCGAGATAGTGGTAATGTACACTGCCCCACAAATAGCTCAGTATCGACTGTAAAGGGACTCTATAAGCGCGCTATACCCCAGATGCCAGAGAAAGTTCTTGATGCTCCGGACATTATTGATGATTTTTATCTTAATATTTTGGACTGGTCTGTGGACAATATTTTGGCTGTCGCGTTAAATCAAGAAGTTTATCTTTGGAACTCATCTTCAGGAGATATCACTTGTCTTATGTCCTGTGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCG TACCAGCCGTCACTTGGCGTGAGTATTTAGTTTCCAGTGC] [+] EMBL CD133221 [ CCTCCGCTATAATGCTGCCATTCGAGATAGTGGTAATGTACACTGCCCCACAAATAGCTCAGTATCGACTGTAAAGGGACTCTATAAGCGCGCTATACCCCAGATGCCAGAGAAAGTTCCTGATGCTCCGGACATTATTGATGATTTTTATCTTAATATTTTGGACTGGTCTGTGGACAATATTTTGGCTGTCGCGTTAAATCAAGAAGTTTATCTTTGGAACTCATCTTCAGGAGATATCACTTGTCTTATGTCCTGTGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCGTCTACTCGCCGTCACTTGGCGTGAGTATTTAGTTTCCAG ] [-] EMBL CD133382 [ CTCCGCTATAATGCTGCCATTCGAGATAGTGGTAATGTACACTGCCCCACAAATAGCTCAGTATCGACTGTAAAGGGACTCTATAAGCGCGCTATACCCCAGATGCCAGAGAAAGTTCTTGATGCTCCGGACATTATTGATGATTTTTATCTTAATATTTTGGACTGGTCTGTGGACAATATTTTGGCTGTCGCGTTAAATCAAGAAGTTTATCTTTGGAACTCATCTTCAGGAGATATCACTTGTCTTATGTCCTGTGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCG TACCAGCCGTCACTTGGCGTGAGTATTTAGTTTCCAGT ] consensusID : consensus_6936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence [GCCCTCGAGAGCCAGAATTCGGCACGAGGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCGTACCAGCCGTCACTTGGCGTGAGTATTTAGTTTCCAGTGCATCTAAATCAGGACATATTAGACATCACGATACGCGGATCGCTCATCATGAAGTTGGAGTTAGTGATTTTCATACCCAGGAAGTTTGTGGATTGAGTTGGTCGCCAGATAAACGTTTCCTTGCATCAGGAGCAAATGACAACTTTGTTTGTGTTTGGCCTTTTAGTGATCTCTCAAAGCCTGAACATGTGCTTAGAGATCACCAGGCTGCAGTTAAGGCATTATCATGGTGCCC] [+] EMBL CD083338 [GCCCTCGAGAGCCAGAATTCGGCACGAGGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTACGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCGTACCAGCCGTCACTTGGCGTGAGTATTTAGTTTCCAGTGCATCTAAATCAGGACATATTAGACATCACGATACGCGGATCGCTCATCATGAAGTTGGAGTTAGTGATTTTCATACCCAGGAAGTTTGTGGATTGAGTTGGTCGCCAGATAAACGTTTCCTTGCATCAGGAGCAAATGACAACTTTGTTTGTGTTTGGCCTTTTAGTGATCTCTCAAAGCCTGAACATGTGCTTAGAGATCACCAGGCTGCAGTTAAGGCATTATCATGGTGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6936#0 GAGGCTTTATTCCTAATAGGTCATCAACAAACATGTGCCGAGCGCGGCATGTAATTCGGA 60 consensus_6936#1 -------------------------------------------GCCCTCGAGAGCCAGAA 17 ** * * * consensus_6936#0 AATGCAACGAAGATCCATCAAATGAAGAGGCTGTTGATTATCAACAAGCTGTAG---CAG 117 consensus_6936#1 TTCGGCACGAGGGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTC 77 * **** * * ***** * * * ** ** ** * * consensus_6936#0 ATAGTTTAAATACTAATGACTGTCCTGGAAGTCGAATCCTCCGCTATAATGCTGCCATTC 177 consensus_6936#1 CCAATATCATTGCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCC 137 * * * * * * * ** * * **** * * * * *** * *** * consensus_6936#0 GAGATAGTGGTAATGTACACTGCCCCACAAATAGCTCAGTATCGACTGTAAAGGGACTCT 237 consensus_6936#1 -AGTCACTAGTA-CGTACGATGCGACTTGGA------GGTGTCAGCTCTGCCGGCCGCGT 189 ** * * *** **** *** * * ** ** ** * ** * consensus_6936#0 ATAAGCGCGCTATACCCCAGATGCCAG-AGAAAGTTCTTGATGCTCCGGACATTATTGAT 296 consensus_6936#1 ACCAGC-CGTCA----CTTGGCGTGAGTATTTAGTTTCCAGTGCATCTAAATCAGGACAT 244 * *** ** * * * * ** * **** *** * * ** consensus_6936#0 GATTTTTATCTTAATATTTTGGACTGGTCTGTGGACAATATTTTGGCTGTCGCGTTAAAT 356 consensus_6936#1 ATTAGACATCACGATACGC-GGATCGCTCATC--ATGAAGTTGGAGTTAGTGATTTTCAT 301 * *** *** *** * ** * * ** * * * ** ** consensus_6936#0 ---CAAGAAGTTTATCTTTGGAACTCATCTTCAGGAGATATCACTTGTCTTATGTCCTGT 413 consensus_6936#1 ACCCAGGAAGTTTGTGGATTGAGTTGGTCGCCAG---ATAAACGTTTCCTTGCATCA--- 355 ** ******* * * ** * ** *** *** ** *** ** consensus_6936#0 GGTTTTGACGATGAATATGTTTCGAGTTTGGAATGGTCTCCTGATTCTCCCAATATCATT 473 consensus_6936#1 GGAGCAAATGACAACTTTGTTT-GTGTTTGGCCT--TTTAGTGAT-CTCTCAAAGCC--T 409 ** * ** * * ***** * ****** * * * **** *** *** * * consensus_6936#0 GCCATTGGACTTAGCGCTGGTCGTGTTCAACTTTGGGATGTTTCCAGCCAGTCACTAGTA 533 consensus_6936#1 GAACATGTGCTTAGAGATCACCAGGCTGCAGTTAAGGCATTATCATGGTGCCC------- 462 * ** ***** * * * * * * ** ** * ** * * consensus_6936#0 CGTACGATGCGACTTGGAGGTGTCAGCTCTGCCGGCCGCGTACCAGCCGTCACTTGGCGT 593 consensus_6936#1 ------------------------------------------------------------ consensus_6936#0 GAGTATTTAGTTTCCAGTGC 613 consensus_6936#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||