These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [TTGATTTTTTTTTATTTTTTTTTGTCTAAAGTTTATATTCGACTTTGAATTGGTAAAATACATTACGTAAGTAAAGCAAAAAAATTTCCTTTATGTTCAATACCATCCACAAGTGTGAAAAAGGTCACTCCAACACACCTTAAGACGAAATTGACACGTTTAATTGCCACTGTGCGTTTTAGCAATGAGTCAAAAAAGATACGTTAGGCACGTATATTGCGTATGACATTGATCCTATTTATGTTGTTCTAGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTCATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAAAAGCATGTTATTTCTAGGTAATTGACTAAGAAATTTGGTGATGTGTACTCCAGACAGACAACTTCCAGGGAATGCCAGCGGGCAGCAGCACAGATCCGTATGCATGCAAATATAGGAATCTACAAGTTTTCGGTTACCTGGGGCGGATTAAATCTGAACTTACAGAATAGTAATGGCAGATGA] [+] EMBL AI395372 [TTGATTTTTTTTTATTTTTTTTTGTCTAAAGTTTATATTCGACTTTGAATTGGTAAAATACATTACGTAAGTAAAGCAAAAAAATTTCCTTTATGTTCAATACCATCCACAAGTGTGAAAAAGGTCACTCCAACACACCTTAAGACGAAATTGACACGTTTAATTGCCACTGTGCGTTTTAGCAATGAGTCAAAAAAGATACGTTAGGCACGTATATTGCGTATGACATTGATCCTATTTATGTTGTTCTAGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTCATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAAAAGCATGTTATTTCTAGGTAATTGACTAAGAAATTTGGTGATGTGTACTCCAGACAGACAACTTCCAGGGAATGCCAGCGGGCAGCAGCACAGATCCGTATGCATGCAAATATAGGAATCTACAAGTTTTCGGTTACCTGGGGCGGATTAAATCTGAACTTACAGAATAGTAATGGCAGATGA] consensusID : consensus_6943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 484 fasta sequence [TATGTTGTTCTAGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTCATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAGAAGCATGTTATTTCTAGGTAATCGACTAAGAAATTTGGTGATGTGTAGTCGAGACAGACAACTTCCAGGGAATGCCAGCGGCCAGCAACACAGATCCGTATGCATGCAAATATAGGAATAGAATAGTTAATGCTAGATGAGACCACGGATTAGGTACCACTTAATGTGATCATCAAATGTAAAGATGATACTGATCTGCATATAGACAAACGGCTAGGACTCTCCCTACGTCTTCAAAATATTCCCAGTGTTTGT----TAAGAACTCTGGCGTCTTACAGACGGTACAAAAACAAAGGTTGACGAGACCTCAATTCCTTAAAACATATCACTTACGTTGGCAGGGACAATATTTCCGAGAGGCCTTGTCTGTGCACGAATACTGGACAGCGGTA] [-] EMBL CD154561 [TATGTTGTTCTAGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTCATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAGAAGCATGTTATTTCTAGGTAATCGACTAAGAAATTTGGTGATGTGTAGTCGAGACAGACAACTTCCAGGGAATGCCAGCGGCCAGCAACACAGATCCGTATGCATGCAAATATAGGAATAGAATAGTTAATGCTAGATGAGACCACGGATTAGGTACCACTTAATGTGATCATCAAATGTAAAGATGATACTGATCTGCATATAGACAAACGGCTAGGACTCTCCCTACGTCTTCAAAATATTCCCAGTGTTTGT TAAGAACTCTGGCGTCTTACAGACGGTACAAAAACAAAGGTTGACGAGACCTCAATTCCTTAAAACATATCACTTACGTTGGCAGGGACAATATTTCCGAGAGGCCTTGTCTGTGCACGAATACTGGACAGCGGTA] [+] EMBL CD094117 [ GATCCGTATGCATGCAAATATAGGAATAGAATAGTTAATGCTAGATGAGACCACGGATTAGGTACCACTTAATGTGATCATCAAATGTAAAGATGATACTGATCTGCATATAGACAAAAGGCTATGACTCTCCCTACGTCTTCAAAATATTCCCAGTGTTTGTCTACTAAGAACTCTGGCGTCTTACAGACGGTACAAAAACAAAGGTTGACGAGACCTCAATTCCTTAAAACATATCACTTA ] consensusID : consensus_6943#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [TGTGTTCTGGTGTTTAGTCTATGCATTTTATTATGTAGTTGCGCATTGTTTTCCAAGATTTCTGTTTTGTTGTTAAGTCATGTAACTTCAACTTGCACAAGACAAAGGGTTGGCTGTGATCTTCTATCTATGTAGGTCAACAACAACATTTGCCAGTGCCCGTCCGGATACCGCTGTCCAGTATTCGTGCACAGACAAGGCCTCTCGGAAATATTGTCCCTGCCAACGTACCTCGACCACCCATGGTTAACCAGGTGTACTTGCTCCCTAAATCTGGGATAACTAATAATGTCCTTCCAAGTGCTCCGAGTGTGATGCAAGTTAGGAGTTTGCCAGTTGGACAAACTGTACCCCACCCC] [+] EMBL CD200833 [TGTGTTCTGGTGTTTAGTCTATGCATTTTATTATGTAGTTGCGCATTGTTTTCCAAGATTTCTGTTTTGTTGTTAAGTCATGTAACTTCAACTTGCACAAGACAAAGGGTTGGCTGTGATCTTCTATCTATGTAGGTCAACAACAACATTTGCCAGTGCCCGTCCGGATACCGCTGTCCAGTATTCGTGCACAGACAAGGCCTCTCGGAAATATTGTCCCTGCCAACGTACCTCGACCACCCATGGTTAACCAGGTGTACTTGCTCCCTAAATCTGGGATAACTAATAATGTCCTTCCAAGTGCTCCGAGTGTGATGCAAGTTAGGAGTTTGCCAGTTGGACAAACTGTACCCCACCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6943#0 TTGATTTTTTTTTATTTTTTTTTGTCTAAAGTTTATATTCGACTTTGAATTGGTAAAATA 60 consensus_6943#1 ------------------------------------------------------------ consensus_6943#2 ------------------------------------------------------------ consensus_6943#0 CATTACGTAAGTAAAGCAAAAAAATTTCCTTTATGTTCAATACCATCCACAAGTGTGAAA 120 consensus_6943#1 ------------------------------------------------------------ consensus_6943#2 ------------------------------------------------------------ consensus_6943#0 AAGGTCACTCCAACACACCTTAAGACGAAATTGACACGTTTAATTGCCACTGTGCGTTTT 180 consensus_6943#1 ------------------------------------------------------------ consensus_6943#2 ------------------------------------------------------------ consensus_6943#0 AGCAATGAGTCAAAAAAGATACGTTAGGCACGTATATTGCGTATGACATTGATCCTATTT 240 consensus_6943#1 -----------------------------------------------------------T 1 consensus_6943#2 ------------------------------------TGTGTTCTGGTGTTTAGTCTATGC 24 consensus_6943#0 ATGTTGTTCT--AGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTC 298 consensus_6943#1 ATGTTGTTCT--AGCTTCGTGCTATAATGCAAGCCAAATGTGTAGCGTGGTAAAGCATTC 59 consensus_6943#2 ATTTTATTATGTAGTTGCGCATTGTTTTCCAAGATTTCTGTTTTGT-TGTTAAGTCATGT 83 ** ** ** * ** * ** * * * **** *** * * ** *** *** consensus_6943#0 ATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAAAAGCATGTTATTTCTAGGTAA-TTGA 357 consensus_6943#1 ATGTTCCTACTTTGCGAATGTTAAAGCTGAGAAGAAGCATGTTATTTCTAGGTAA-TCGA 118 consensus_6943#2 AACTTC--AACTTGCACAAGACAAAGGGTTGGCTGTG-ATCTTCTATCTATGTAGGTCAA 140 * *** * **** * * **** * * ** ** * **** *** * * consensus_6943#0 CTAAGAAATTTGGTGATGTGTACTCCAGACAGACAACTTCCAGGGAATGCCAGCGGGCA- 416 consensus_6943#1 CTAAGAAATTTGGTGATGTGTAGTCGAGACAGACAACTTCCAGGGAATGCCAGCGGCCA- 177 consensus_6943#2 CAACAACATTTGCCAGTGC-CCGTCCGGATAC-CGCTGTCCAGTATTCGTGCACAGACAA 198 * * * ***** ** ** ** * * ***** * * * ** consensus_6943#0 -GCAGCACAGATCCGT-ATGCATGCAAATATAGGAATCTACAAGTTTTCGGTTACCTGGG 474 consensus_6943#1 -GCAACACAGATCCGT-ATGCATGCAAATATAGGAATAGAATAGTTAATGCTAGATGAGA 235 consensus_6943#2 GGCCTCTCGGAAATATTGTCCCTGCCAACGTACC--TCGACCA-CCCATGGTTAACCAGG 255 ** * * ** * * * *** ** ** * * * * * * consensus_6943#0 --GCGGATTAAATCTGAACTTACAGAATAGT--AATG-GCAGATGA-------------- 515 consensus_6943#1 CCACGGATTAGGTACCACTTAATGTGATCATCAAATGTAAAGATGATACTGATCTGCATA 295 consensus_6943#2 ---TGTACTTGCTCCCTAAATCTGGGATAACTAATAATGTCCTTCCAAGTGCTCCGAGTG 312 * * * * ** * * consensus_6943#0 ------------------------------------------------------------ consensus_6943#1 TAGACAAACGGCTAGGACTCTCCCTACGTCTTCAAAATATTCCCAGTGTTTGTTAAGAAC 355 consensus_6943#2 TGATGCAA--GTTAGGAGTTTGCCAGT-TGGACAAACTGTACCCCACCCC---------- 359 consensus_6943#0 ------------------------------------------------------------ consensus_6943#1 TCTGGCGTCTTACAGACGGTACAAAAACAAAGGTTGACGAGACCTCAATTCCTTAAAACA 415 consensus_6943#2 ------------------------------------------------------------ consensus_6943#0 ------------------------------------------------------------ consensus_6943#1 TATCACTTACGTTGGCAGGGACAATATTTCCGAGAGGCCTTGTCTGTGCACGAATACTGG 475 consensus_6943#2 ------------------------------------------------------------ consensus_6943#0 --------- consensus_6943#1 ACAGCGGTA 484 consensus_6943#2 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||