These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6948#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 802 fasta sequence [AATTAATTGTTCAGGTTATGGAATTGTTGGAATGTACAAACGACGAACCGTGGAATCGTACAATATTCGAACATTTAATAAGTGTCATGATTACCTTCATGCTAAACAGCACGGTTAGATTTAATGAAATCGTCGTCAAACTTAATTCAAAATTGGAAGGTCGTACGTGGACTAAGTCAAGCCATTATGTAATGTGGTTCGTGCTAAATGCTACTTCAGGATTCATTGGAAAAAATATGTTAACAGATTTCGTCCCTTGCCTCCGGCTTTTCGATATTTTGTTCCCTGAAGCTGAAGATCCTGACCGAGCTATCGATCTTCCTATACCATGCTGTAGTAGAAAAGATTCCACTGGTCAATCAAATGATAGTGAGATTAGTTTGACACAAAAAGATGGAGTTCTGCCCAAAAACATCTTAGGCAAAGAACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTATCTCCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAGATAATGAAAATGAAGTACAAGAACAAAGCTCCACTTCTGCTGAGGATTCAGACAACGAATGTATTCAGAATGAAACCGAGAGTTTACTTCCTCCCCATTTTCGCTCCTTTACAGCTTGCTGGAAACGCCAAGGTCGACTTTTGCAATTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACCCAGGCCGGGCCGGCCAATCACTAGGAA] [+] EMBL CD159320 [AATTAATTGTTCAGGTTATGGAATTGTTGGAATGTACAAACGACGAACCGTGGAATCGTACAATATTCGAACATTTAATAAGTGTCATGATTACCTTCATGCTAAACAGCACGGTTAGATTTAATGAAATCGTCGTCAAACTTAATTCAAAATTGGAAGGTCGTACGTGGACTAAGTCAAGCCATTATGTAATGTGGTTCGTGCTAAATGCTACTTCAGGATTCATTGGAAAAAATATGTTAACAGATTTCGTCCCTTGCCTCCGGCTTTTCGATATTTTGTTCCCTGAAGCTGAAGATCCTGACCGAGCTATCGATCTTCCTATACCATGCTGTAGTAGAAAAGATTCCACTGGTCAATCAAATGATAGTGAGATTAGTTTGACACAAAAAGATGGAGTTCTGCCCAAAAACATCTTAGGCAAAGAACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTATCTCCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAGATAATGA ] [+] EMBL CD096016 [ GCCATTATGTAATGTGGTTCGTGCTAAATGCTACTTCAGGATTCATTGGAAAAAATATGTTAACAGATTTCGTCCCTTGCCTCCGGCTTTTCGATATTTTGTTCCCTGAAGCTGAAGATCCTGACCGAGCTATCGATCTTCCTATACCATGCTGTAGTAGAAAAGATTCCACTGGTCAATCAAATGATAGTGAGATTAGTTTGACACAAAAAGATGGAGTTCTGCCCAAAAACATCTTAGGCAAAGAACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTATCTCCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAGATAATGAAAATGAAGTACAAGAACAAAGCTCCACTTCTGCTGAGGATTCAGACAACGAATGTATTCAGAATGAAACCGAGAGTTTACTTCCTCC ] [-] EMBL CD200879 [ AACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTATCTCCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAGATAATGAAAATGAAGTACAAGAACAAAGCTCCACTTCTGCTGAGGATTCAGACAACGAATGTATTCAGAATGAAACCGAGAGTTTACTTCCTCCCCATTTTCGCTCCTTTACAGCTTGCTGGAAACGCCAAGGTCGACTTTTGCAATTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACCCAGGCCGGGCCGGCCAATCACTAGGAA] consensusID : consensus_6948#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [TGGAAACGCCAAGGTCGACTTTTGCATTTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACTCAGACCAATAGAATCCCGCATATCACGTCGTATGCAAGCACTAGTACAATCTTTTCAAAGTTGACGTGGAACCAACTTTTCGTTGTACTAAATGCTTTTAGTACAGATAATGAAGTTAGTCAGTTAATACAAAGGTTGATAGACATATTCTGGACAAATGAAACTGCAAAGGATAATCAGAAACTGGAACATGGAGTTTTATGGTCACGATTAATAAAAAATGGGAAAGTTGATTTTCCATACGATCTATCTGCCTATGGTCGCTTACAACCTTTATCTCACCATCTTATGCGTACAATGTCCGTTCATGTAAGAATGCTAGTTTTACACTTCTTCCTACAAAAATTCTCGGTCCTTCCGAATTCCAATATGCTGTCTACACCAGCTATTATAGAAACCTTTTGCCGTATTCTA] [-] EMBL CD094364 [TGGAAACGCCAAGGTCGACTTTTGCATTTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACTCAGACCAATAGAATCCCGCATATCACGTCGTATGCAAGCACTAGTACAATCTTTTCAAAGTTGACGTGGAACCAACTTTTCGTTGTACTAAATGCTTTTAGTACAGATAATGAAGTTAGTCAGTTAATACAAAGGTTGATAGACATATTCTGGACAAATGAAACTGCAAAGGATAATCAGAAACTGGAACATGGAGTTTTATGGTCACGATTAATAAAAAATGGGAAAGTTGATTTTCCATACGATCTATCTGCCTATGGTCGCTTACAACCTTTATCTCACCATCTTATGCGTACAATGTCCGTTCATGTAAGAATGCTAGTTTTACACTTCTTCCTACAAAAATTCTCGGTCCTTCCGAATTCCAATATGCTGTCTACACCAGCTATTATAGAAACCTTTTGCCGTATTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6948#0 AATTAATTGTTCAGGTTATGGAATTGTTGGAATGTACAAACGACGAACCGTGGAATCGTA 60 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 CAATATTCGAACATTTAATAAGTGTCATGATTACCTTCATGCTAAACAGCACGGTTAGAT 120 consensus_6948#1 ---------------------------------------TGG-AAACGCCAAGGTCGACT 20 ** **** ** *** * consensus_6948#0 TTAATGAAATCGTCGTCAAACTTAATTCAAAATTGGAAGGTCGTACGTGGACTAAGTCAA 180 consensus_6948#1 TT--TGCATTTGGCTACAGCTCCTGTTTGCCTCTGGCAACATGTTTTACGTAAAAGTCGA 78 ** ** * * * * ** ** *** * ** * ***** * consensus_6948#0 GCCATT--ATGTAATGTGGTTCGTGCTAAATGCTACTTCAGGATTCATTGGAAAAAATAT 238 consensus_6948#1 CTTGGTCAAGATCACTTGCCACGTGTTA--TGCCAC--CAGCACTCA--GACCAATAGAA 132 * * * * ** **** ** *** ** *** * *** * ** * * consensus_6948#0 GTTAACAGATTTCGTCCCTTGCCTCCGGCTTTTCGATATTTTGTTCCCTGAAGCTGAAGA 298 consensus_6948#1 TCCCGCATATCACGTCGTATGCAAGCACTAGTACAATCTTTT------CAAAGTTGACG- 185 ** ** **** *** * * * ** **** *** *** * consensus_6948#0 TCCTGACCGAGCTATCGATCTTCCTATACCATGCTGTAGTAGAAAAGATTCCACTGGTCA 358 consensus_6948#1 --TGGAACCAACTTTTCGTTGTACTAAATGCT--TTTAGTACAGATAATGAAGTTAGTCA 241 ** * * ** * * * *** * * * ***** * * ** * **** consensus_6948#0 ATCAAATGATAGTGAGATTAGTTTGACACAAAAAGATGGAGTTCTGCCCAAAAACATCTT 418 consensus_6948#1 GTTAATACAAAGGTTGATAGACATATTCTGGACAAATGAAA--CTGCAAAGGATAATCAG 299 * ** * ** *** * * * *** * **** * * *** consensus_6948#0 AGGCAAAGA-ACTAAGTAGTACAACAGAAAATACTAAGTTGAGTGTTTCTCAATTTCCTA 477 consensus_6948#1 AAACTGGAACATGGAGTTTTATGGTCACGATTAATAAAAAATGGGAAAGTTGATTTTCCA 359 * * * * *** ** * ** *** * * * **** * * consensus_6948#0 TCTCCAAAAAGATGGATATCGATAGCTCTGATCTCAATCGTGAACTTGTTACCTATAGAG 537 consensus_6948#1 TA-CGATCTATCTGCCTATGGTCGCTTACAACCTTTATC-TCACCATCTTATGCGTACAA 417 * * * * ** *** * * * ** *** * * * * *** ** * consensus_6948#0 ATAATGAAAATGAAGTACAAGAACAAAGCTCCACTTCTGCTGAGGATTCAGACAACGAAT 597 consensus_6948#1 TGTCCGTTCATGTA--AGAATGCTAGTTTTACACTTCTTCCTACAA---AAATTCTCGGT 472 * *** * * ** * * ******* * * * * * * consensus_6948#0 GTATTCAGAATGAAACCGAGAGTTTACTTCCTCCCCATTTTCGCTCCTTTACAGCTTGCT 657 consensus_6948#1 CCTTCCGAATTCCAATATGCTGTCTACACCAGCTATTATAGAAACCTTTTGCCGTATTCT 532 * * * * ** ** *** * * * * *** * * * ** consensus_6948#0 GGAAACGCCAAGGTCGACTTTTGCAATTGGCTACAGCTCCTGTTTGCCTCTGGCAACATG 717 consensus_6948#1 A----------------------------------------------------------- 533 consensus_6948#0 TTTTACGTAAAAGTCGACTTGGTCAAGATCACTTGCCACGTGTTATGCCACCAGCACCCA 777 consensus_6948#1 ------------------------------------------------------------ consensus_6948#0 GGCCGGGCCGGCCAATCACTAGGAA 802 consensus_6948#1 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||