cluster # 6952

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Schistosoma mansoni
cluster # 6952 cluster # 6952 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6952#0 length = 569 sequences # 3

consensus_6952#1 length = 369 sequences # 1

consensusID : consensus_6952#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 569
fasta sequence

                              [CAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCCCGCATCAGACAAACCCACAGGTGACCTCGTATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACA]

[+] EMBL CD096849             [CAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCCCGCATCAGACAAACCCACAGGTGACCTCGTATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCGTCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACA]
[-] EMBL CD094664             [               CCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATC                                                                                                                 ]
[+] EMBL CD094534             [                                                                                                                                                                                                                          AACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCAT                                                                                       ]




>consensus_6952#0
CAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACC
CACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGG
TGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCC
CGCATCAGACAAACCCACAGGTGACCTCGTATCAGACAAACCCACAGGTGACCTCGCATC
AGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAA
ACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCAC
AGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGA
CCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGC
ATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGA
CAAACCCACAGGTGACCTCGCATCAGACA

consensusID : consensus_6952#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 369
fasta sequence

                              [GTATCTGTTCATCTTGCATAGTGTAGCTAATAATACAATCCTGCTAAATTCAGATTATCCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCGTCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCT]

[-] EMBL CD121044             [GTATCTGTTCATCTTGCATAGTGTAGCTAATAATACAATCCTGCTAAATTCAGATTATCCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCGTCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCT]




>consensus_6952#1
GTATCTGTTCATCTTGCATAGTGTAGCTAATAATACAATCCTGCTAAATTCAGATTATCC
CACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGG
TGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCT
CGCGTCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATC
AGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAA
ACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCAC
AGGTGACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6952#0      CAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACC 60
consensus_6952#1      ------------------------------------------------------------
                                                                                  

consensus_6952#0      CACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGG 120
consensus_6952#1      ------------------------------------------------------------
                                                                                  

consensus_6952#0      TGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCC 180
consensus_6952#1      ------------------------------------------------------------
                                                                                  

consensus_6952#0      CGCATCAGACAAACCCACAGGTGACCTCGTATCAGACAAACCCACAGGTGACCTCGCATC 240
consensus_6952#1      -GTATCTGTTCATCTTGCATAGTGTAGCTAATAATACAATCCTGC--------TAAATTC 51
                       * *** *   * *   **        *  ** * **** **  *        *    **

consensus_6952#0      AGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAA 300
consensus_6952#1      AGATTATCCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAA 111
                      ***  * *****************************************************

consensus_6952#0      ACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCAC 360
consensus_6952#1      ACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCAC 171
                      ************************************************************

consensus_6952#0      AGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGA 420
consensus_6952#1      AGGTGACCTCGCGTCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGA 231
                      ************ ***********************************************

consensus_6952#0      CCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGC 480
consensus_6952#1      CCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGC 291
                      ************************************************************

consensus_6952#0      ATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGA 540
consensus_6952#1      ATCAGACAAACCCACAGGTGACCTCGCATCAGACAAACCCACAGGTGACCTCGCATCAGA 351
                      ************************************************************

consensus_6952#0      CAAACCCACAGGTGACCTCGCATCAGACA 569
consensus_6952#1      CAAACCCACAGGTGACCT----------- 369
                      ******************