These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 836 fasta sequence [TAATAATTACGCTGAGGGAGCACTCAGGCTCGCTGAAGGCTGTAAAAACGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAGTTACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTTTGCGAATCGGTTAGAAACACAAATGTACATTTTTCTTCTGTTGGTCAAAAGCGTTCTTCAGTAGATTTCGAAAAGCATTATTCTTCTCCTAAAAGACATTTAGAAAAATCAGAAAGTACAAGCTTCCATAAAAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTGAGTCGACTCTTTTCCAAACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAAATGAAAATAACAATAGAATATCTCTGATGTATGGCTCCTCTAAACGATCTTTAGGGAGTCGTCGAGGTGTTCGGGGTAACTTTGTCCCACCATTTGAAAAAGATTCAGATTCTACATCAAAATCGACATCAAACTACAGTGCAGAAAACAAATCAGAGGCATCTATATGTGATGAACGACTGAAACAATTTGACCAAAAGATTGTTGATATGATTATGAGTGAGATAATGGATTCCAAGAGTTCAATTACATGGGATGATATTGCTGGTCTTGAATTTTCTAAGAAAACATTGCAGGAAATTGTAATACTTCCAATGCTTAGACCGGACCTTTTTGTCGGGCTTCGTGGACCTCCAAAGGGCTTGCTACTTT] [+] EMBL AI975386 [TAATAATTACGCTGAGGGAGCACTCAGGCTCGCTGAAGGCTGTAAAAACGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAGTTACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTTTGCGAATCGGTTAGAAACACAAATGTACATTTTTCTTCTGTTGGTCAAAAGCGTTCTTCAGTAGATTTCGAAAAGCATTATTCTTCTCCTAAAAGACATTTAGAAAAATCAGAAAGTACAAGCTTCCATAAAAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTGAGTCGACTCTTTTCCAAACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAAATGAAAATAACAATAGAATATCTCTGAT ] [+] EMBL CD186995 [ GATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAGTTACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTTTGCGAATCGGTTAGAAACACAAATGTACATTTTTCTTCTGTTGGTCAAAAGCGTTCTTCAGTAGATTTCGAAAAGCATTATTCTTCTCCTAAAAGACATTTAGAAAAATCAGAAAGTACAAGCTTCCTTAAAAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTGAGTCGACTCTTTTCCAAACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAAATGAAAATTACAATAGAATATCTCTGATGTATGGCTCCTCTAAACGATCTTTAGGGAGTCGTCGAG ] [-] EMBL CD189369 [ TCTTCAGTAGATTTCGAAAAGCATTATTCTTCTCTTAAAAGACATTTAGAAAAATCAGAAAGTACAAGCTTCCATAAAAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTGAGTCGACTCTTTTCCAAACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAAATGAAAATAACAATAGAATATCTCTGATGTATGGCTCCTCTAAACGATCTTTAGGGAGTCGTCGAGGTGTTCGGGGTAACTTTGTCCCACCATTTGAAAAAGATTCAGATTCTACATCAAAATCGACATCAAACTACAGTGCAGAAAACAAATCAGAGGCATCTATATGTGATGAACGACTGAAACAATTTGACCAAAAGATTGTTGATATGATTATGAGTGAGATAATGGATTCCAAGAGTTCAATTACATGGGATGATATTGCTGGTCTTGAATTTTCTAAGAAAACATTGCAGGAAATTGTAATACTTCCAATGCTTAGACCGGACCTTTTTGTCGGGCTTCGTGGACCTCCAAAGGGCTTGCTACTTT] consensusID : consensus_6955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [ATAGTAGGTACTAAATGGTGCTCTTTGATTTGTAGGGATTAATAATTACCCTGAGGGAGCACTCAGGCTCGCTGAAGGCTGTAAAAACGGTTTGTCCTATTCTTTTTATATATGCGTTTTCAGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATGTATGTTGCTTATTTTTCAAAATTAACTATTATTAGTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTAACAAATTCATTTCTCATCTAAAATATGAGCAATACAATACTAGTACAAGTATAATTGCCCAAATAAAGAGTTGTGCAACATTCGACCACACTCTATTCCCGTTGCACACTCCTTCAGATCTGTTTATTTATACTATACCTTTTACAGTCAAATTAGTATCAAGATTACGCCAAAGATGAAGCAGATGGGCATAAGCGCTCCAACTCTTAATATATTGACCTAATCTATTACGTAACTATCAGCGT] [+] EMBL CD127290 [ATAGTAGGTACTAAATGGTGCTCTTTGATTTGTAGGGATTAATAATTACCCTGAGGGAGCACTCAGGCTCGCTGAAGGCTGTAAAAACGGTTTGTCCTATTCTTTTTATATATGCGTTTTCAGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAGGAACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATGTTACCAAATGTATGTTGCTTATTTTTCAAAATTAACTATTATTAGTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGGTAACAAATTCATTTCTCATCTAAAATATGAGCAATACAATACTAGTACAAGTATAATTGCCCAAATAAAGAGTTGTGCAACATTCGACCACACTCTATTCCCGTTGCACACTCCTTCAGATCTGTTTATTTATACTATACCTTTTACAGTCAAATTAGTATCAAGATTACGCCAAAGATGAAGCAGATGGGCATAAGCGCTCCAACTCTTAATATATTGACCTAATCTATTACGTAACTATCAGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6955#0 ---------------------------------------TAATAATTACGCTGAGGGAGC 21 consensus_6955#1 ATAGTAGGTACTAAATGGTGCTCTTTGATTTGTAGGGATTAATAATTACCCTGAGGGAGC 60 ********** ********** consensus_6955#0 ACTCAGGCTCGCTGAAGGCTGTAAAAACG------------------------------- 50 consensus_6955#1 ACTCAGGCTCGCTGAAGGCTGTAAAAACGGTTTGTCCTATTCTTTTTATATATGCGTTTT 120 ***************************** consensus_6955#0 ---AGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAG 107 consensus_6955#1 CAGAGAGCAACCACTGGCGTAGCGCGATGACAGTCGACATGGCCTTAAATGCACTTGAAG 180 ********************************************************* consensus_6955#0 GAGTTACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATG 167 consensus_6955#1 GA---ACTTTCAAACAACCCTGTCCCTTCGCAAATCAATCACTTCCCAGTGACTTTGATG 237 ** ******************************************************* consensus_6955#0 TTACCAAATTTTGTAGTGTGTTAACTGAACTGTTCGATGGAGAAGATTCTTCTAACCAGG 227 consensus_6955#1 TTACCAAAT------GTATGTTGCTT--ATTTTTCAAAATTAACTATTATTAGTTTGTAG 289 ********* ** **** * * * *** * * *** ** * consensus_6955#0 TTTGCGAATCGGTTAGAAACACAAATGTACATTTTTCTT-CTGTTGGTCAAAAGCGTTCT 286 consensus_6955#1 TGTGTTAACTGAACTGTTCGATGGA-GAAGATTCTTCTAACCAGGTAACAAATTCATTTC 348 * ** ** * * * * * * *** **** * **** * ** consensus_6955#0 TCAG-TAGATTTCGAAAAGCATTATTCTTCTCCTAAAAGACATTTAGAAAAATCAGAAAG 345 consensus_6955#1 TCATCTAAAATATGAGCAATACAATACTAGTAC--AAGTATAATTGCCCAAATAAAGAGT 406 *** ** * * ** * * ** ** * * ** * * ** **** * * consensus_6955#0 TACA-AGCTTCCATAAAAATTCCAGTAATAGCAACCATAACACTGAAGTAACTGAATCTG 404 consensus_6955#1 TGTGCAACATTCGACCACACTCTATTCCCGTTGCACACTCCTTCAGATCTGTTTATTTAT 466 * * * * * * * ** * * ** * * * * * consensus_6955#0 AGTCGACTCTTTTCCAAACAGCAGGATCCTTGCTGGAACAAAATCTAAAATCGAAACAAA 464 consensus_6955#1 ACTATACCTTTT-----ACAGTCAAATTAGTATCAAGATTACGCCAAAGAT-GAAGCAGA 520 * * ** *** **** ** * * * * ** ** *** ** * consensus_6955#0 ATGAAAATAACAATAGAATATCTCTGATGTATGGCTCCTCTAAACGATCTTTAGGGAGTC 524 consensus_6955#1 TGGGCATAAGCGCTCCAA--CTCTTAATATATTGAC---CTAATCTAT---TACGTAACT 572 * * * * * ** * ** *** * **** * ** ** * * consensus_6955#0 GTCGAGGTGTTCGGGGTAACTTTGTCCCACCATTTGAAAAAGATTCAGATTCTACATCAA 584 consensus_6955#1 ATCAGCGT---------------------------------------------------- 580 ** ** consensus_6955#0 AATCGACATCAAACTACAGTGCAGAAAACAAATCAGAGGCATCTATATGTGATGAACGAC 644 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 TGAAACAATTTGACCAAAAGATTGTTGATATGATTATGAGTGAGATAATGGATTCCAAGA 704 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 GTTCAATTACATGGGATGATATTGCTGGTCTTGAATTTTCTAAGAAAACATTGCAGGAAA 764 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 TTGTAATACTTCCAATGCTTAGACCGGACCTTTTTGTCGGGCTTCGTGGACCTCCAAAGG 824 consensus_6955#1 ------------------------------------------------------------ consensus_6955#0 GCTTGCTACTTT 836 consensus_6955#1 ------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||