These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6977#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 439 fasta sequence [TATCAATAATAAATAAAGAAAATTCCATCATTTTACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACAATAATATTTATAATAAACATTCTCTCTCACTCACACACACACAGTCTCTGTCTTTTCCATTTTGATTGTTTTCATTTCCAAAGAATAAAAAAACCCTGGTAATAATATTCCTAATAAGATTTCGAATTTGTGTATCCATTTAATATTCTTAGTATTAAATTTTTCACCTTTTCTCCCTCTCTCTCTCTCTCTCTCTGTCGCTCTATCTCACTCTTTCTCGTACCTCGACTGTTACTGTTGTGTTCGTGTGTGTATGTGTATCTGTGTGGGTGTGTGTATACTTGTTCTTGTTTATTTAAACAAGTTAATTTCATGTTTC] [+] EMBL AW017158 [TATCAATAATAAATAAAGAAAATTCCATCATTTTACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACAATAATATTTATAATAAACATTCTCTCTCACTCACACACACACAGTCTCTGTCTTTTCCATTTTGATTGTTTTCATTTCCAAAGAATAAAAAAACCCTGGTAATAATATTCCTAATAAGATTTCGAATTTGTGTATCCATTTAATATTCTTAGTATTAAATTTTTCACCTTTTCTCCCTCTCTCTCTCTCTCTCTCTGTCGCTCTATCTCACTCTTTCTCGTACCTCGACTGTTACTGTTGTGTTCGTGTGTGTATGTGTATCTGTGTGGGTGTGTGTATACTTGTTCTTGTTTATTTAAACAAGTTAATTTCATGTTTC] [+] EMBL AA566171 [ ACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACAATAATATTTATAATAAACATTCTCNCNCNCTCATATATATATAGTC ] [+] EMBL SMAA18506 [ TTAAAACAAACCATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACAATAATATTTATAATAAACATTCTCTCTCACTCACACACACACAGTCTCTGTCTTTTCCATTTTGATTGTTTTCATTTCCAAAGAATAAAAAAACCCTGGTAATAATATTCCTAATAAGATTTCGAATTTGTGTATCCATTTAATATTCTTAGTATTAAATTTTTCACCTTTTCTCCCTCTCTATCTCTC ATCTCTGTCGCTCTATATCtcnc ] consensusID : consensus_6977#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 143 fasta sequence [ATAATTTTACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAAGGCCATTGATACTAACTAAACGGGATCTACAACGATAATATTTATAATAAACATTCCTCTGGTGTAAAAAAGTTTGTTTTTTG] [+] EMBL SMAA69232 [ATAATTTTACAATTCATTGTTGATTAATTAAAACAAACAATATTCAAAAGATTCATAAAAGGCCATTGATACTAACTAAACGGGATCTACAACGATAATATTTATAATAAACATTCCTCTGGTGTAAAAAAGTTTGTTTTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6977#0 TATCAATAATAAATAAAGAAAATTCCATCATTTTACAATTCATTGTTGATTAATTAAAAC 60 consensus_6977#1 --------------------------ATAATTTTACAATTCATTGTTGATTAATTAAAAC 34 ** ******************************* consensus_6977#0 AAACAATATTCAAAAGATTCATAAAAAACCATTGATACTAACTAAACAGGATCTACAACA 120 consensus_6977#1 AAACAATATTCAAAAGATTCATAAAAGGCCATTGATACTAACTAAACGGGATCTACAACG 94 ************************** ******************* *********** consensus_6977#0 ATAATATTTATAATAAACATTCTCTCTCACTCACACACACACAGTCTCTGTCTTTTCCAT 180 consensus_6977#1 ATAATATTTATAATAAACATTC-CTCTGGTGTAAAAAAGTTTGTTTTTTG---------- 143 ********************** **** * * * * * ** consensus_6977#0 TTTGATTGTTTTCATTTCCAAAGAATAAAAAAACCCTGGTAATAATATTCCTAATAAGAT 240 consensus_6977#1 ------------------------------------------------------------ consensus_6977#0 TTCGAATTTGTGTATCCATTTAATATTCTTAGTATTAAATTTTTCACCTTTTCTCCCTCT 300 consensus_6977#1 ------------------------------------------------------------ consensus_6977#0 CTCTCTCTCTCTCTCTGTCGCTCTATCTCACTCTTTCTCGTACCTCGACTGTTACTGTTG 360 consensus_6977#1 ------------------------------------------------------------ consensus_6977#0 TGTTCGTGTGTGTATGTGTATCTGTGTGGGTGTGTGTATACTTGTTCTTGTTTATTTAAA 420 consensus_6977#1 ------------------------------------------------------------ consensus_6977#0 CAAGTTAATTTCATGTTTC 439 consensus_6977#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||