These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [CGTGCAAAGGAACCTTGTTAACCAAGTGAACTTATTTGTGGTTGTTATTTCAGAAAGCAGCTTACAAGTAACATTTATTTTTTAACACTAGTGTTACTAGCTGTTACCATTTTGTTGCTCAATATACCTTTTTATAATTTAACTGTAGTTTGTTACCTTTTGTGTTACTAATAGACACACGCCTAGATTTGTAGTGTTAATTCTTTTGGTATATTGTTGGTAACTTTGCGTATCCTTACTTTTTAACTAAGCTCTTTCGCTGAGGTCCACCACATCCTTTACTGGTCGACTGAATGAAGAAAAAACACACAACGTATTCGTAAACATGAAGATAAATTTCATTCACACAATCGTAGTAACAAATTCAACCATAAACTTATATCTTATAGCATAGAAAGTAAAACCAAATCGTGAACTGTTGCGTAAGAATGTCAACTTCGTTCTCTGATCACCCAGCTTGTGTATGATTGCTTCATTGTATCACCTTTTTGTTATGAAGAACTCTGTGCATTTAGGCTCAACTATGGAGATTATGGTT] [+] EMBL CD153005 [CGTGCAAAGGAACCTTGTTAACCAAGTGAACTTATTTGTGGTTGTTATTTCAGAAAGCAGCTTACAAGTAACATTTATTTTTTAACACTAGTGTTACTAGCTGTTACCATTTTGTTGCTCAATATACCTTTTTATAATTTAACTGTAGTTTGTTACCTTTTGTGTTACTAATAGACACACGCCTAGATTTGTAGTGTTAATTCTTTTGGTATATTGTTGGTAACTTTGCGTATCCTTACTTTTTAACTAAGCTCTTTCGCTGAGGTCCACCACATCCTTTACTGGTCGACTGAATGAAGAAAAAACACACAACGTATTCGTAAACATGAAGATAAATTTCATTCACACAATCGTAGTAACAAATTCAACCATAAACTTATATCTTATAGCATAGAAAGTAAAACCAAATCGTGAACTGTTGCGTAAGAATGTCAACTTCGTTCTCTGATCACCCAGCTTGTGTATGATTGCTTCATTGTATCACCTTTTTGTTATGAAGAACTCTGTGCATTTAGGCTCAACTATGGAGATTATGGTT] consensusID : consensus_6985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 449 fasta sequence [CACTGTTACCATTTTGTTGTTCAATATACCTTTTTATAATTTAACTGTAATTTGTTACCTTTTGTGTTAATCATAGACACACGCTTAGGTTCGTAGTGTTAATTCTTTTGGTATATTGTTGGTAACGTTGCGAATTGTTATATTTCAACTAAGCTCTTTTGCTGAGGTCCACCACAAATCTGGTGAGCCCTTATATTTCTCTTTGGAACTGTAATTTTGAGTTCACTTATAAACATTACGGCGCTGATTTTTCTCTTGGTAGTGATTATTTTTTGTATATTTGTAATGTTTTCATCCGAGTCTGAAGACATCAGCCAGGACAACGACCGAACAGAGTTACACGCTTTAAACGTAATAAATGTACCTCCATTCAGTAGAGTAAACCCTCGTATATGGTTTGCACAGGTGGAAGTGCAGTTTCAGCGTCGTAACATTCGTTCACAACAATC] [-] EMBL CD169611 [CACTGTTACCATTTTGTTGTTCAATATACCTTTTTATAATTTAACTGTAATTTGTTACCTTTTGTGTTAATCATAGACACACGCTTAGGTTCGTAGTGTTAATTCTTTTGGTATATTGTTGGTAACGTTGCGAATTGTTATATTTCAACTAAGCTCTTTTGCTGAGGTCCACCACAAATCTGGTGAGCCCTTATATTTCTCTTTGGAACTGTAATTTTGAGTTCACTTATAAACATTACGGCGCTGATTTTTCTCTTGGTAGTGATTATTTTTTGTATATTTGTAATGTTTTCATCCGAGTCTGAAGACATCAGCCAGGACAACGACCGAACAGAGTTACACGCTTTAAACGTAATAAATGTACCTCCATTCAGTAGAGTAAACCCTCGTATATGGTTTGCACAGGTGGAAGTGCAGTTTCAGCGTCGTAACATTCGTTCACAACAATC] consensusID : consensus_6985#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [AACCAAGTGAACTTATTTGTGGTTGTTATCTCAGAAAGCAGCTTACATTCATTTCATAACACTGTTACCATTTTGTTGTTCAATATACCTTTTTATAATTTAACTGTAATTTGTTACCTTTTGCGTTAGTCATAGACACACGCTTAGGTTTGTAGTGTTAATTCGTTTGGTATATTGTTGGTAACTTTGCGCATTATTATATTTTAACTAAGCTCTTTTGCTGAGGTCCACCACACAAGTTGGATTTTGTTCAATTAATTTATCTTTACAATTCTTCTATCAGTATGCTGCTATATTGCATCTTGACTGATTGGAAAATAATAAAAAATAAAGTGAAAGTTATAGCTTTAAGTGAATTTCTTAATTTGAATTTCCCTCTTATAGTCAGTATTGACTCATTGAATGGACAGTTA] [-] EMBL CD161979 [AACCAAGTGAACTTATTTGTGGTTGTTATCTCAGAAAGCAGCTTACATTCATTTCATAACACTGTTACCATTTTGTTGTTCAATATACCTTTTTATAATTTAACTGTAATTTGTTACCTTTTGCGTTAGTCATAGACACACGCTTAGGTTTGTAGTGTTAATTCGTTTGGTATATTGTTGGTAACTTTGCGCATTATTATATTTTAACTAAGCTCTTTTGCTGAGGTCCACCACACAAGTTGGATTTTGTTCAATTAATTTATCTTTACAATTCTTCTATCAGTATGCTGCTATATTGCATCTTGACTGATTGGAAAATAATAAAAAATAAAGTGAAAGTTATAGCTTTAAGTGAATTTCTTAATTTGAATTTCCCTCTTATAGTCAGTATTGACTCATTGAATGGACAGTTA] consensusID : consensus_6985#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 326 fasta sequence [TTTTATAATTTAACTGTAATNTGTTACCTTTNGCGTTAATCATAGACACACGCTTAGGTTCGTAGTGTTAATTCTTTTGGTATATTGTTGGTAACGTTGCGAATTGTTATATTTCAACTAAGCTCTTTTGCTGAGGTCCACCACAATCCCCATATCATTTCAATTTCAACCTGTTAAGTAGTTTTCAAGTAAATTTGTTTCCTGCTCGACTTAATAGACTTGAATTCAAAGTTAATTTTATCATAGTAAGTTGAGTAATATTTGACGATGTTACATTCCACTTTTATAACCTTTTATAAAGATTGCTTGTAGAGGCTGGTACTATG] [-] EMBL CD095257 [TTTTATAATTTAACTGTAATNTGTTACCTTTNGCGTTAATCATAGACACACGCTTAGGTTCGTAGTGTTAATTCTTTTGGTATATTGTTGGTAACGTTGCGAATTGTTATATTTCAACTAAGCTCTTTTGCTGAGGTCCACCACAATCCCCATATCATTTCAATTTCAACCTGTTAAGTAGTTTTCAAGTAAATTTGTTTCCTGCTCGACTTAATAGACTTGAATTCAAAGTTAATTTTATCATAGTAAGTTGAGTAATATTTGACGATGTTACATTCCACTTTTATAACCTTTTATAAAGATTGCTTGTAGAGGCTGGTACTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6985#1 ------------------------------------------------------------ consensus_6985#3 ------------------------------------------------------------ consensus_6985#0 CGTGCAAAGGAACCTTGTTAACCAAGTGAACTTATTTGTGGTTGTTATTTCAGAAAGCAG 60 consensus_6985#2 -------------------AACCAAGTGAACTTATTTGTGGTTGTTATCTCAGAAAGCAG 41 consensus_6985#1 --------------------------------------CACTGTTACCATTTTGTTGTTC 22 consensus_6985#3 ------------------------------------------------------------ consensus_6985#0 CTTACAAGTAACATTTATTTTTTAACACTAGTGTTACTAGCTGTTACCATTTTGTTGCTC 120 consensus_6985#2 CTTACA-------TTCATTTCATAACAC-------------TGTTACCATTTTGTTGTTC 81 consensus_6985#1 AATATACCTTTTTATAATTTAACTGTAATTTGTTACCTTTTGTGTTAATCATAGACACAC 82 consensus_6985#3 ---------TTTTATAATTTAACTGTAATNTGTTACCTTTNGCGTTAATCATAGACACAC 51 consensus_6985#0 AATATACCTTTTTATAATTTAACTGTAGTTTGTTACCTTTTGTGTTACTAATAGACACAC 180 consensus_6985#2 AATATACCTTTTTATAATTTAACTGTAATTTGTTACCTTTTGCGTTAGTCATAGACACAC 141 ****************** * ********** * **** * ********** consensus_6985#1 GCTTAGGTTCGTAGTGTTAATTCTTTTGGTATATTGTTGGTAACGTTGCGAATTGTTATA 142 consensus_6985#3 GCTTAGGTTCGTAGTGTTAATTCTTTTGGTATATTGTTGGTAACGTTGCGAATTGTTATA 111 consensus_6985#0 GCCTAGATTTGTAGTGTTAATTCTTTTGGTATATTGTTGGTAACTTTGCGTATCCTTACT 240 consensus_6985#2 GCTTAGGTTTGTAGTGTTAATTCGTTTGGTATATTGTTGGTAACTTTGCGCATTATTATA 201 ** *** ** ************* ******************** ***** ** *** consensus_6985#1 TTTCAACTAAGCTCTTTTGCTGAGGTCCACCACAAATCTGGTGAGCCCTTATATTTCTCT 202 consensus_6985#3 TTTCAACTAAGCTCTTTTGCTGAGGTCCACCACAATCC-------CCATATCATTTCAAT 164 consensus_6985#0 TTTTAACTAAGCTCTTTCGCTGAGGTCCACCACATCCTTT-----ACTGGTCGACTGAAT 295 consensus_6985#2 TTTTAACTAAGCTCTTTTGCTGAGGTCCACCACACAAGTT-----GGATTTTGTTCAATT 256 *** ************* **************** * consensus_6985#1 TTGGAACTGTAATTTTGAGTTCACTTATAAACATTACGGCGCTGATTTTTCTCT-TGGTA 261 consensus_6985#3 TTCAACCTGTTAAGTAGTTTTCAAGTAAATTTGTTTC----CTG---CTCGACT-TAATA 216 consensus_6985#0 GAAGAAAAAACACACAACGTATTCGTAAACATGAAGATAAATTTCATTCACACAATCGTA 355 consensus_6985#2 AATTTAT--CTTTACAATTCTTCTATCAGTATGCTGCTATATTGCATCTTGAC--TGATT 312 * * * * * consensus_6985#1 GTGATTATTTTTTGTATATTTGTAATGTTTTCATCCGAGTCTGAAGACATCAGCCAGGAC 321 consensus_6985#3 GACTTGAATTCAAAGTTAATTTTATCATAGTAAGTTGAGT-----AATATTTGACGATGT 271 consensus_6985#0 GTAACAAATTCAACCATAAACTTATATCTTATAGCATAGAAAGT-AAAACCAAATCGTGA 414 consensus_6985#2 GGAAAATAATAAAAAATAAAGTGAAAG-TTATAGCTTTAAGTGA-ATTTCTTAATT-TGA 369 * * ** * * consensus_6985#1 AACGACCGAACAGAGTTACACGCTTTAAACGTAATAAATGTACCTCCATTCAGTAGAGTA 381 consensus_6985#3 TACATTCCACTTTTATAACCTTTTATAAAGATTGCTTGTAGAGGCTGGTACTATG----- 326 consensus_6985#0 ACTGTTGCGTAAGAATGTCAACTTCG-TTCTCTGATCACCCAGCTTGTGTATGATTGCTT 473 consensus_6985#2 ATTTCCCTCTTATA--GTCAGTATTGACTCATTGAATGGACAGTTA-------------- 413 * * * consensus_6985#1 AACCCTCGTATATGGTTTGCACAGGTGGAAGTGCAGTTTCAGCGTCGTAACATTCGTTCA 441 consensus_6985#3 ------------------------------------------------------------ consensus_6985#0 CATTGTATCACCTTTTTGTTATGAAGAACTCTGTGCATTTAGGCTCAACTATGGAGATTA 533 consensus_6985#2 ------------------------------------------------------------ consensus_6985#1 CAACAATC 449 consensus_6985#3 -------- consensus_6985#0 TGGTT--- 538 consensus_6985#2 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||