These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 350 fasta sequence [TCTCCTATCAACCTGTCAACCGACATGTTCGCCAACACCACGTCAAGACACACAGCATCTGTCACCACAATCCAGTAGAGTCACCGACCAGTCACGAGCACCCAACACAAAGTACCAGCACCAGCACAGGTTCGCTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACACACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGACATACGGCATCGCTTGAAATCGACCGTGATACCACCTAGTGTATCGACCA] [+] EMBL CD089321 [TCTCCTATCAACCTGTCAACCGACATGTTCGCCAACACCACGTCAAGACACACAGCATCTGTCACCACAATCCAGTAGAGTCACCGACCAGTCACGAGCACCCAACACAAAGTACCAGCACCAGCACAGGTTCGCTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACACACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGACATACGGCAT ] [+] EMBL CD089345 [TCTCCTATCAACCTGTCAACCGACATGTTCGCCAACACCACGTCAAGACACACAGCATCTGTCACCACAATCCAGTAGAGTCACCGACCAGTCACGAGCACCCAACACAAAGTACCAGCACCAGCACAGGTTCGCTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACACACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGACATACGGCAT ] [-] EMBL CD087706 [ CCAGCACAGGTTCGTTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACACACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGACATACGGCATCGCTTGAAATCGACCGTGATACCACCTAGTGTATCGACCA] consensusID : consensus_6988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence [GTCGTNCGGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATGTACCNATTACACAAAACAGACTCGACCATCAACACACGTGGAACACTCCAGTCAGAACACTCAACACATTGACATACGGCATCACTTGAAATCGACCGTGATATCACCTAGTGTATCGA] [-] EMBL CD087727 [GTCGTNCGGTCACACTCGTCATACTCTCAGACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATGTACCNATTACACAAAACAGACTCGACCATCAACACACGTGGAACACTCCAGTCAGAACACTCAACACATTGACATACGGCATCACTTGAAATCGACCGTGATATCACCTAGTGTATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6988#0 TCTCCTATCAACCTGTCAACCGACATGTTCGCCAACACCACGTCAAGACACACAGCATCT 60 consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 GTCACCACAATCCAGTAGAGTCACCGACCAGTCACGAGCACCCAACACAAAGTACCAGCA 120 consensus_6988#1 ------------------------------------------------------------ consensus_6988#0 CCAGCACAGGTTCGCTCCACACAACACCGGCTTCTTGCAGTCACACTCGTCATACTCTCA 180 consensus_6988#1 -------------------------------GTCGTNCGGTCACACTCGTCATACTCTCA 29 ** * * ********************* consensus_6988#0 GACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATCTACCAATTACAC 240 consensus_6988#1 GACAACTGTAATGACCAACCATGATCCACTCCACCACAAACACAAATGTACCNATTACAC 89 *********************************************** **** ******* consensus_6988#0 ACGACCGACTCGACCATCAACACACCTGAAACACTCCACTCAGAACATTCAACACATTGA 300 consensus_6988#1 AAAACAGACTCGACCATCAACACACGTGGAACACTCCAGTCAGAACACTCAACACATTGA 149 * ** ******************* ** ********* ******** ************ consensus_6988#0 CATACGGCATCGCTTGAAATCGACCGTGATACCACCTAGTGTATCGACCA 350 consensus_6988#1 CATACGGCATCACTTGAAATCGACCGTGATATCACCTAGTGTATCGA--- 196 *********** ******************* *************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||