These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 622 fasta sequence [ATGTAACGCGTTCGGAAACTTGCTCCACCAACATCTGGTTTCGTTTACTAGATTGCCTTGATCTTACGCTTGTTTCACTGCTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTTAACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTCCACATGTATTCCTCATTATAATAACCCATCTTTTGTTTCATTCTCCCGCCGCTCCCCTAGCGTCTCAGATACTGTTTTCAAAATTATTCGTAATGAAGGTATTTTATCTC] [+] EMBL CD095615 [ATGTAACGCGTTCGGAAACTTGCTCCACCAACATCTGGTTTCGTTTACTAGATTGCCTTGATCTTACGCTTGTTTCACTGCTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTTAACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTC ] [+] EMBL CD162665 [ ACGCTTGTTTCACTGCTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAA ] [+] EMBL CD195049 [ CTATTTAACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTCCACATGTATTCCTCATTATAATAACCCATCTTTTGTTTCATTCTCCCGCCGCTCCCCTAGCGTCTCAGATACTGTTTTCAAAATTATTCGTAATGAAGGTATTTTATCTC] consensusID : consensus_6995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [CTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTTAACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGGTAGCGATAAGCACAGCCTCTAATTTTTGATAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTC] [-] EMBL CD146733 [CTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATTGTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTACGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTTAACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTTGTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGGTAGCGATAAGCACAGCCTCTAATTTTTGATAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGACTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTCGAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGTTGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6995#0 ATGTAACGCGTTCGGAAACTTGCTCCACCAACATCTGGTTTCGTTTACTAGATTGCCTTG 60 consensus_6995#1 ------------------------------------------------------------ consensus_6995#0 ATCTTACGCTTGTTTCACTGCTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATT 120 consensus_6995#1 --------------------CTGATTTTATCTTTTGCTTCTATTATTGGACTTACACATT 40 **************************************** consensus_6995#0 GTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTA 180 consensus_6995#1 GTTCCCCAAATTCCAACATACAGCTTGCCTTCAGGCCTGAGTCAAACTTACCAAGGATTA 100 ************************************************************ consensus_6995#0 CGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTT 240 consensus_6995#1 CGGAGCTTATAGTAATGGGTTTTACATGGTGATATGGGGTCTAGTGAAGAGAAGCTATTT 160 ************************************************************ consensus_6995#0 AACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTT 300 consensus_6995#1 AACGTCTCATTTACTCACCGGATCATTGCTTCTTCAGTTGGTGGTATAATGACAGCGTTT 220 ************************************************************ consensus_6995#0 GTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAG--------------------- 339 consensus_6995#1 GTCATGACACCTCTTGATGTCGTAAAAGTCCGAATGCAGGTAGCGATAAGCACAGCCTCT 280 *************************************** consensus_6995#0 ------------TCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGA 387 consensus_6995#1 AATTTTTGATAGTCTCCCAAGACATACTCTGAAACCAAGTGTCTTGTTTATTGTAATGGA 340 ************************************************ consensus_6995#0 CTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTC 447 consensus_6995#1 CTAGCCGAACGCCTCTCTACGTGTTCGTTGAGCTGTAACACCTGTTCTGTGTCTTGGTTC 400 ************************************************************ consensus_6995#0 GAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGT 507 consensus_6995#1 GAACGTGCTATGAAGTATGCAGGGAGGTGGAACTTATCTACATCAAACGAAACACATTGT 460 ************************************************************ consensus_6995#0 TGTTCCACATGTATTCCTCATTATAATAACCCATCTTTTGTTTCATTCTCCCGCCGCTCC 567 consensus_6995#1 TGTTC------------------------------------------------------- 465 ***** consensus_6995#0 CCTAGCGTCTCAGATACTGTTTTCAAAATTATTCGTAATGAAGGTATTTTATCTC 622 consensus_6995#1 ------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||